Wall clock time and date at job start Fri Apr 10 2020 17:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35750 * 117.00088 * 2 1 4 4 C 1.39205 * 120.81185 * 0.02562 * 3 2 1 5 5 C 1.38316 * 119.28844 * 179.97438 * 4 3 2 6 6 N 1.31611 * 120.96599 * 359.97438 * 5 4 3 7 7 C 1.32793 * 121.78547 * 0.02831 * 6 5 4 8 8 C 1.48190 * 119.69878 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99833 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99986 * 359.97438 * 8 7 6 11 11 C 1.46491 * 120.00103 * 180.02562 * 10 8 7 12 12 H 1.09005 * 110.64157 * 31.85277 * 11 10 8 13 13 C 1.54330 * 110.87204 * 268.60794 * 11 10 8 14 14 N 1.47022 * 107.27093 * 219.37277 * 13 11 10 15 15 C 1.36938 * 125.64738 * 178.90551 * 14 13 11 16 16 H 1.08000 * 119.99838 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99820 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99832 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46876 * 60.00007 * 19 17 15 21 21 H 1.48503 * 109.46776 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47278 * 299.99954 * 19 17 15 23 23 C 1.47523 * 108.71559 * 358.93837 * 14 13 11 24 24 C 1.54909 * 104.78433 * 24.12363 * 23 14 13 25 25 H 1.09002 * 111.00594 * 81.08595 * 24 23 14 26 26 C 1.53004 * 111.00603 * 204.90137 * 24 23 14 27 27 C 1.39101 * 120.60483 * 0.26506 * 7 6 5 28 28 H 1.09004 * 109.47013 * 59.99985 * 1 2 3 29 29 H 1.08993 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47087 * 299.99872 * 1 2 3 31 31 H 1.08000 * 120.36271 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.51778 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99615 * 359.97438 * 10 8 7 34 34 H 1.08998 * 109.87833 * 338.79039 * 13 11 10 35 35 H 1.08997 * 109.88363 * 99.79896 * 13 11 10 36 36 H 0.97003 * 120.00159 * 180.02562 * 18 17 15 37 37 H 1.09001 * 110.37251 * 265.30968 * 23 14 13 38 38 H 1.09004 * 110.41044 * 142.95250 * 23 14 13 39 39 H 1.08994 * 109.46941 * 175.41948 * 26 24 23 40 40 H 1.09004 * 109.46932 * 295.41783 * 26 24 23 41 41 H 1.09002 * 109.47107 * 55.41072 * 26 24 23 42 42 H 1.08003 * 120.51078 * 179.73299 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3876 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2792 3.6590 0.0016 7 6 4.0262 2.5610 0.0010 8 6 5.5034 2.6780 0.0011 9 8 6.1922 1.6769 0.0010 10 7 6.0831 3.8948 0.0011 11 6 7.5434 4.0105 0.0006 12 1 7.9947 3.1772 -0.5381 13 6 8.0893 4.0885 1.4420 14 7 9.1849 5.0689 1.4413 15 6 9.9201 5.4449 2.5337 16 1 10.7073 6.1768 2.4289 17 6 9.6536 4.8852 3.7757 18 7 8.6946 3.9928 3.9033 19 14 10.6570 5.3975 5.2658 20 1 10.5013 6.8573 5.4892 21 1 10.1779 4.6601 6.4624 22 1 12.0890 5.0827 5.0303 23 6 9.3607 5.5814 0.0692 24 6 7.9866 5.3651 -0.6127 25 1 7.2897 6.1603 -0.3482 26 6 8.1390 5.2559 -2.1312 27 6 3.4346 1.3021 -0.0056 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2244 2.3532 0.0014 32 1 1.3927 4.5192 0.0019 33 1 5.5332 4.6939 0.0007 34 1 7.3005 4.4145 2.1199 35 1 8.4628 3.1120 1.7503 36 1 8.5081 3.6020 4.7713 37 1 10.1350 5.0170 -0.4504 38 1 9.6116 6.6420 0.0887 39 1 7.1722 5.0235 -2.5775 40 1 8.5046 6.2028 -2.5287 41 1 8.8490 4.4637 -2.3691 42 1 4.0436 0.4101 -0.0104 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080246814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:07 Heat of formation + Delta-G solvation = -32.045501 kcal Electronic energy + Delta-G solvation = -24768.273348 eV Core-core repulsion = 21134.649827 eV Total energy + Delta-G solvation = -3633.623520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93813 -40.79145 -39.42572 -38.79492 -35.68247 -34.34838 -32.71487 -32.49823 -32.13406 -29.61337 -28.50724 -27.39073 -25.91477 -24.68275 -24.43048 -22.41682 -21.57181 -21.30600 -19.62807 -18.89041 -18.42852 -17.53077 -17.21163 -16.92089 -16.85668 -16.66568 -16.09089 -15.88573 -15.58801 -15.35670 -14.80356 -14.74416 -14.48498 -14.39143 -14.08209 -13.69797 -13.41188 -13.33528 -13.04442 -12.84701 -12.57174 -12.53575 -12.32542 -12.25348 -12.08944 -11.85669 -11.68510 -11.47673 -11.36675 -10.74119 -10.71150 -10.41323 -10.03072 -9.98165 -8.92951 -7.83904 -5.22319 -0.47982 0.20347 1.44260 1.49058 1.55267 1.64286 1.81697 2.29160 2.50142 2.78731 3.07696 3.34173 3.57115 3.61240 3.73977 3.80776 3.95674 4.04576 4.10082 4.15342 4.34001 4.39374 4.47583 4.48286 4.61085 4.70357 4.71767 4.75803 4.88787 4.91668 5.06214 5.07739 5.17541 5.28409 5.35003 5.44470 5.49755 5.59367 5.75971 6.14405 6.16130 6.40220 6.79124 7.05164 7.13512 7.75467 8.39867 9.25259 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.003423 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.844647 B = 8177.020335 C = 9140.766922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.160 3.840 4 C -0.224 4.224 5 C 0.136 3.864 6 N -0.496 5.496 7 C 0.103 3.897 8 C 0.563 3.437 9 O -0.573 6.573 10 N -0.679 5.679 11 C 0.132 3.868 12 H 0.079 0.921 13 C 0.189 3.811 14 N -0.627 5.627 15 C -0.242 4.242 16 H 0.090 0.910 17 C -0.072 4.072 18 N -0.954 5.954 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.133 3.867 24 C -0.094 4.094 25 H 0.090 0.910 26 C -0.128 4.128 27 C -0.164 4.164 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.418 0.582 34 H 0.016 0.984 35 H -0.008 1.008 36 H 0.244 0.756 37 H 0.029 0.971 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.801 -0.552 -13.035 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.106 3.894 4 C -0.244 4.244 5 C -0.023 4.023 6 N -0.212 5.212 7 C -0.033 4.033 8 C 0.348 3.652 9 O -0.452 6.452 10 N -0.328 5.328 11 C 0.026 3.974 12 H 0.097 0.903 13 C 0.063 3.937 14 N -0.354 5.354 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.265 4.265 18 N -0.603 5.603 19 Si 0.811 3.189 20 H -0.197 1.197 21 H -0.224 1.224 22 H -0.202 1.202 23 C 0.008 3.992 24 C -0.114 4.114 25 H 0.108 0.892 26 C -0.186 4.186 27 C -0.187 4.187 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.204 0.796 32 H 0.224 0.776 33 H 0.256 0.744 34 H 0.034 0.966 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.761 -0.719 -12.835 23.575 hybrid contribution -0.054 -0.756 1.380 1.574 sum -19.816 -1.475 -11.455 22.936 Atomic orbital electron populations 1.23558 0.74960 1.06344 1.03293 1.86096 1.24699 1.25620 1.87503 1.19219 0.91218 0.86306 0.92677 1.22818 1.03665 0.91602 1.06352 1.23343 0.88551 0.99274 0.91131 1.67584 1.09068 1.30433 1.14127 1.20558 0.92874 0.89741 1.00107 1.18297 0.87054 0.83644 0.76184 1.90761 1.64688 1.37804 1.51909 1.45589 1.07061 1.08258 1.71923 1.22202 0.79424 0.99090 0.96707 0.90289 1.21077 0.89755 0.91101 0.91816 1.44738 1.38593 1.47391 1.04691 1.19501 1.11821 1.19303 0.86465 0.89178 1.25775 1.00325 0.99480 1.00895 1.70245 1.34414 1.32649 1.23012 0.85081 0.77996 0.77727 0.78097 1.19708 1.22447 1.20198 1.21881 0.95151 0.97981 0.84168 1.22552 0.97272 0.94824 0.96729 0.89156 1.21648 1.02246 1.02914 0.91776 1.21358 0.93674 0.98862 1.04762 0.90313 0.86110 0.90725 0.79571 0.77611 0.74426 0.96619 0.98957 0.94714 0.95362 0.92354 0.91660 0.90095 0.92858 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.33 -6.29 10.51 -90.75 -0.95 -7.25 16 3 C 0.16 3.49 6.73 22.74 0.15 3.64 16 4 C -0.22 -3.30 9.11 22.52 0.21 -3.09 16 5 C 0.14 2.32 11.17 84.74 0.95 3.27 16 6 N -0.50 -13.05 9.54 -185.14 -1.77 -14.82 16 7 C 0.10 3.32 6.75 41.85 0.28 3.60 16 8 C 0.56 22.22 7.81 86.89 0.68 22.90 16 9 O -0.57 -26.90 15.96 -3.76 -0.06 -26.96 16 10 N -0.68 -25.18 5.10 -439.45 -2.24 -27.43 16 11 C 0.13 5.47 2.78 46.18 0.13 5.60 16 12 H 0.08 3.48 7.44 -2.38 -0.02 3.46 16 13 C 0.19 10.30 5.13 86.73 0.44 10.75 16 14 N -0.63 -33.85 3.40 -691.73 -2.35 -36.20 16 15 C -0.24 -14.06 10.28 84.03 0.86 -13.20 16 16 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 17 C -0.07 -4.32 5.49 84.86 0.47 -3.85 16 18 N -0.95 -61.47 10.31 21.65 0.22 -61.24 16 19 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 C 0.13 5.46 6.71 86.84 0.58 6.04 16 24 C -0.09 -3.17 3.26 -9.40 -0.03 -3.20 16 25 H 0.09 2.87 8.01 -2.39 -0.02 2.85 16 26 C -0.13 -3.23 9.29 71.98 0.67 -2.57 16 27 C -0.16 -4.86 9.60 22.72 0.22 -4.65 16 28 H 0.08 0.32 7.71 -2.38 -0.02 0.30 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.38 7.71 -2.39 -0.02 0.36 16 31 H 0.19 1.03 6.45 -2.91 -0.02 1.02 16 32 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.42 13.51 7.89 -92.71 -0.73 12.77 16 34 H 0.02 0.95 7.27 -2.39 -0.02 0.93 16 35 H -0.01 -0.50 7.50 -2.39 -0.02 -0.52 16 36 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.03 1.14 8.03 -2.39 -0.02 1.12 16 38 H 0.06 2.21 8.14 -2.38 -0.02 2.20 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 41 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 42 H 0.14 4.41 7.64 -2.91 -0.02 4.39 16 Total: -1.00 -82.46 350.20 1.91 -80.55 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.31 Total: 17.26 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 6.72 Total: 26.44 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -6.13 Total: -139.69 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.01 Total: -34.21 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -82.46 1.91 -80.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080246814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.508 kcal (2) G-P(sol) polarization free energy of solvation -82.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds