Wall clock time and date at job start Fri Apr 10 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35660 * 116.99883 * 2 1 4 4 C 1.39294 * 119.61648 * 180.22991 * 3 2 1 5 5 C 1.38325 * 119.30648 * 180.27369 * 4 3 2 6 6 C 1.38781 * 118.55997 * 359.50258 * 5 4 3 7 7 C 1.39135 * 119.18950 * 0.25216 * 6 5 4 8 8 C 1.48146 * 119.69315 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00165 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00138 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00301 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.63699 * 34.30048 * 11 10 8 13 13 C 1.54323 * 110.71976 * 271.16085 * 11 10 8 14 14 N 1.47028 * 107.26991 * 219.44284 * 13 11 10 15 15 C 1.36929 * 125.64919 * 178.90690 * 14 13 11 16 16 H 1.07997 * 120.00448 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00052 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00287 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46914 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47124 * 119.99815 * 19 17 15 22 22 H 1.48493 * 109.47349 * 240.00192 * 19 17 15 23 23 C 1.47425 * 108.70123 * 358.93918 * 14 13 11 24 24 C 1.55119 * 104.94411 * 24.00418 * 23 14 13 25 25 H 1.08999 * 110.93523 * 81.21384 * 24 23 14 26 26 C 1.52999 * 111.16287 * 205.13141 * 24 23 14 27 27 N 1.31903 * 119.62046 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47192 * 60.00241 * 1 2 3 29 29 H 1.09000 * 109.47614 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47056 * 300.00406 * 1 2 3 31 31 H 1.07995 * 120.34333 * 0.02934 * 4 3 2 32 32 H 1.08002 * 120.72325 * 179.78209 * 5 4 3 33 33 H 1.07998 * 120.41144 * 180.28044 * 6 5 4 34 34 H 0.97009 * 119.99946 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.88095 * 338.85778 * 13 11 10 36 36 H 1.08997 * 109.88077 * 99.86941 * 13 11 10 37 37 H 0.96999 * 120.00423 * 180.02562 * 18 17 15 38 38 H 1.08994 * 110.36382 * 142.97276 * 23 14 13 39 39 H 1.09006 * 110.36273 * 265.18197 * 23 14 13 40 40 H 1.09007 * 109.47442 * 172.17165 * 26 24 23 41 41 H 1.09007 * 109.47384 * 292.17196 * 26 24 23 42 42 H 1.08996 * 109.47555 * 52.16861 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4364 1.2724 -0.0049 5 6 4.0577 2.5082 0.0009 6 6 3.2666 3.6485 0.0009 7 6 1.8818 3.5137 0.0004 8 6 1.0267 4.7235 0.0009 9 8 1.5354 5.8271 0.0012 10 7 -0.3154 4.6001 -0.0001 11 6 -1.1610 5.7964 0.0009 12 1 -0.6942 6.5973 -0.5726 13 6 -1.4531 6.2572 1.4445 14 7 -2.8555 6.6969 1.4869 15 6 -3.5134 7.1603 2.5948 16 1 -4.5485 7.4599 2.5223 17 6 -2.8500 7.2451 3.8111 18 7 -1.5884 6.8805 3.8995 19 14 -3.7476 7.8765 5.3228 20 1 -5.1469 8.2179 4.9609 21 1 -3.7505 6.8255 6.3719 22 1 -3.0594 9.0876 5.8373 23 6 -3.4362 6.5555 0.1392 24 6 -2.5719 5.4719 -0.5571 25 1 -2.8885 4.4717 -0.2613 26 6 -2.6093 5.6290 -2.0785 27 7 1.3191 2.3102 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0239 0.3663 -0.0091 32 1 5.1350 2.5842 0.0009 33 1 3.7203 4.6286 0.0007 34 1 -0.7215 3.7191 -0.0008 35 1 -1.3036 5.4278 2.1358 36 1 -0.7947 7.0842 1.7100 37 1 -1.1248 6.9393 4.7495 38 1 -4.4741 6.2294 0.2058 39 1 -3.3696 7.4986 -0.4033 40 1 -1.8890 4.9480 -2.5320 41 1 -3.6096 5.3956 -2.4435 42 1 -2.3561 6.6553 -2.3442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080700109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:16 Heat of formation + Delta-G solvation = -6.185758 kcal Electronic energy + Delta-G solvation = -25157.801315 eV Core-core repulsion = 21525.299158 eV Total energy + Delta-G solvation = -3632.502158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91384 -39.39574 -38.01209 -37.21833 -33.99167 -32.97936 -32.29091 -30.94280 -30.35707 -27.98503 -27.38313 -25.65121 -24.74086 -23.39748 -22.98276 -20.99692 -20.04433 -19.75507 -18.41947 -17.66682 -16.87671 -16.20984 -16.16071 -15.95370 -15.74844 -14.97834 -14.53533 -14.36244 -14.23038 -13.74651 -13.56011 -13.24435 -13.08960 -12.77284 -12.69590 -12.38127 -11.96853 -11.91972 -11.68339 -11.33101 -11.31606 -11.01247 -10.78095 -10.64139 -10.38529 -10.31280 -10.14277 -9.95343 -9.89724 -9.70307 -9.50737 -8.73956 -8.60305 -8.43253 -6.81457 -5.67245 -3.02527 0.58094 1.10462 2.87693 2.90155 3.34374 3.42010 3.46928 3.49891 3.85521 4.02192 4.51938 4.72029 4.83770 4.86599 5.07165 5.11363 5.16289 5.20308 5.32057 5.34289 5.46685 5.51765 5.57128 5.76137 5.79135 5.94878 6.00761 6.01731 6.15256 6.16775 6.20514 6.36487 6.50689 6.64109 6.77002 6.93858 7.00250 7.44623 7.59748 7.63068 7.86954 7.94387 8.27514 8.50842 9.23602 9.84451 10.49386 11.43569 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.003870 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.948034 B = 7232.620063 C = 7643.969874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.318 3.682 4 C -0.173 4.173 5 C -0.048 4.048 6 C -0.150 4.150 7 C 0.130 3.870 8 C 0.566 3.434 9 O -0.527 6.527 10 N -0.689 5.689 11 C 0.118 3.882 12 H 0.090 0.910 13 C 0.174 3.826 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.142 3.858 24 C -0.113 4.113 25 H 0.077 0.923 26 C -0.137 4.137 27 N -0.517 5.517 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.405 0.595 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.252 0.748 38 H 0.042 0.958 39 H 0.022 0.978 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 -13.331 -11.688 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.137 3.863 4 C -0.193 4.193 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.007 4.007 8 C 0.350 3.650 9 O -0.403 6.403 10 N -0.339 5.339 11 C 0.013 3.987 12 H 0.108 0.892 13 C 0.048 3.952 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.015 3.985 24 C -0.133 4.133 25 H 0.096 0.904 26 C -0.195 4.195 27 N -0.243 5.243 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.240 0.760 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.196 -12.781 -11.455 18.611 hybrid contribution 0.041 -0.061 0.984 0.986 sum 7.238 -12.842 -10.472 18.082 Atomic orbital electron populations 1.22917 0.76872 1.03119 1.02909 1.86228 1.23202 1.24176 1.87928 1.19766 0.89401 0.84464 0.92667 1.21251 0.91954 0.99814 1.06321 1.21438 1.00854 0.90826 0.94212 1.22029 0.93127 1.00936 1.01000 1.20970 0.92360 0.90232 0.97171 1.17779 0.82595 0.87143 0.77484 1.90803 1.73844 1.25685 1.49986 1.45778 1.05223 1.10518 1.72332 1.22593 0.88979 0.86515 1.00631 0.89239 1.21472 0.85815 0.99095 0.88836 1.44406 1.08343 1.76400 1.04098 1.19098 0.94782 1.35989 0.85946 0.90239 1.24827 0.96207 1.01581 0.97794 1.69983 1.09116 1.53149 1.24370 0.86052 0.78585 0.78102 0.83063 1.20483 1.21824 1.21726 1.21618 0.95544 0.94434 0.86911 1.22646 0.95491 1.00539 0.94662 0.90436 1.21694 1.01088 1.01702 0.94987 1.67167 1.41039 0.98258 1.17871 0.92120 0.88551 0.91827 0.83761 0.83380 0.83028 0.76012 0.93143 0.93297 0.93776 0.93965 0.95996 0.93121 0.92749 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.52 10.48 -18.68 -0.20 -3.72 16 3 C 0.32 3.95 7.49 -17.13 -0.13 3.82 16 4 C -0.17 -1.72 10.05 -39.16 -0.39 -2.12 16 5 C -0.05 -0.45 10.16 -39.35 -0.40 -0.85 16 6 C -0.15 -1.89 9.63 -39.05 -0.38 -2.26 16 7 C 0.13 1.96 6.75 -83.02 -0.56 1.40 16 8 C 0.57 10.26 7.81 -12.19 -0.10 10.17 16 9 O -0.53 -11.12 16.00 5.35 0.09 -11.03 16 10 N -0.69 -12.06 5.10 -52.88 -0.27 -12.33 16 11 C 0.12 2.31 2.74 -66.10 -0.18 2.13 16 12 H 0.09 1.83 7.51 -51.93 -0.39 1.44 16 13 C 0.17 4.39 5.13 -3.06 -0.02 4.37 16 14 N -0.61 -15.71 3.40 -169.94 -0.58 -16.28 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -27.89 10.31 55.49 0.57 -27.32 16 19 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.14 2.90 6.72 -2.42 -0.02 2.88 16 24 C -0.11 -1.93 3.27 -88.36 -0.29 -2.22 16 25 H 0.08 1.28 8.00 -51.93 -0.42 0.86 16 26 C -0.14 -1.86 9.31 37.16 0.35 -1.51 16 27 N -0.52 -7.25 8.39 -9.87 -0.08 -7.34 16 28 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.15 1.85 7.63 -52.49 -0.40 1.45 16 34 H 0.40 6.33 7.87 -40.82 -0.32 6.01 16 35 H 0.05 1.41 7.27 -51.93 -0.38 1.04 16 36 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 37 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.45 7.99 -51.93 -0.41 0.03 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 42 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -33.76 352.62 -7.54 -41.30 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.05 Total: 3.72 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -1.31 Total: 10.23 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.36 Total: -63.27 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.11 Total: -14.75 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.76 -7.54 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080700109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.114 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds