Wall clock time and date at job start Fri Apr 10 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35660 * 116.99883 * 2 1 4 4 C 1.39294 * 119.61648 * 180.22991 * 3 2 1 5 5 C 1.38325 * 119.30648 * 180.27369 * 4 3 2 6 6 C 1.38781 * 118.55997 * 359.50258 * 5 4 3 7 7 C 1.39135 * 119.18950 * 0.25216 * 6 5 4 8 8 C 1.48146 * 119.69315 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00165 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00138 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00301 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.63699 * 34.30048 * 11 10 8 13 13 C 1.54323 * 110.71976 * 271.16085 * 11 10 8 14 14 N 1.47028 * 107.26991 * 219.44284 * 13 11 10 15 15 C 1.36929 * 125.64919 * 178.90690 * 14 13 11 16 16 H 1.07997 * 120.00448 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00052 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00029 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00287 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46914 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47124 * 119.99815 * 19 17 15 22 22 H 1.48493 * 109.47349 * 240.00192 * 19 17 15 23 23 C 1.47425 * 108.70123 * 358.93918 * 14 13 11 24 24 C 1.55119 * 104.94411 * 24.00418 * 23 14 13 25 25 H 1.08999 * 110.93523 * 81.21384 * 24 23 14 26 26 C 1.52999 * 111.16287 * 205.13141 * 24 23 14 27 27 N 1.31903 * 119.62046 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47192 * 60.00241 * 1 2 3 29 29 H 1.09000 * 109.47614 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47056 * 300.00406 * 1 2 3 31 31 H 1.07995 * 120.34333 * 0.02934 * 4 3 2 32 32 H 1.08002 * 120.72325 * 179.78209 * 5 4 3 33 33 H 1.07998 * 120.41144 * 180.28044 * 6 5 4 34 34 H 0.97009 * 119.99946 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.88095 * 338.85778 * 13 11 10 36 36 H 1.08997 * 109.88077 * 99.86941 * 13 11 10 37 37 H 0.96999 * 120.00423 * 180.02562 * 18 17 15 38 38 H 1.08994 * 110.36382 * 142.97276 * 23 14 13 39 39 H 1.09006 * 110.36273 * 265.18197 * 23 14 13 40 40 H 1.09007 * 109.47442 * 172.17165 * 26 24 23 41 41 H 1.09007 * 109.47384 * 292.17196 * 26 24 23 42 42 H 1.08996 * 109.47555 * 52.16861 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4364 1.2724 -0.0049 5 6 4.0577 2.5082 0.0009 6 6 3.2666 3.6485 0.0009 7 6 1.8818 3.5137 0.0004 8 6 1.0267 4.7235 0.0009 9 8 1.5354 5.8271 0.0012 10 7 -0.3154 4.6001 -0.0001 11 6 -1.1610 5.7964 0.0009 12 1 -0.6942 6.5973 -0.5726 13 6 -1.4531 6.2572 1.4445 14 7 -2.8555 6.6969 1.4869 15 6 -3.5134 7.1603 2.5948 16 1 -4.5485 7.4599 2.5223 17 6 -2.8500 7.2451 3.8111 18 7 -1.5884 6.8805 3.8995 19 14 -3.7476 7.8765 5.3228 20 1 -5.1469 8.2179 4.9609 21 1 -3.7505 6.8255 6.3719 22 1 -3.0594 9.0876 5.8373 23 6 -3.4362 6.5555 0.1392 24 6 -2.5719 5.4719 -0.5571 25 1 -2.8885 4.4717 -0.2613 26 6 -2.6093 5.6290 -2.0785 27 7 1.3191 2.3102 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0239 0.3663 -0.0091 32 1 5.1350 2.5842 0.0009 33 1 3.7203 4.6286 0.0007 34 1 -0.7215 3.7191 -0.0008 35 1 -1.3036 5.4278 2.1358 36 1 -0.7947 7.0842 1.7100 37 1 -1.1248 6.9393 4.7495 38 1 -4.4741 6.2294 0.2058 39 1 -3.3696 7.4986 -0.4033 40 1 -1.8890 4.9480 -2.5320 41 1 -3.6096 5.3956 -2.4435 42 1 -2.3561 6.6553 -2.3442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080700109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:15 Heat of formation + Delta-G solvation = -31.616110 kcal Electronic energy + Delta-G solvation = -25158.904058 eV Core-core repulsion = 21525.299158 eV Total energy + Delta-G solvation = -3633.604900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93751 -40.76199 -39.31843 -38.50906 -35.72216 -34.47280 -33.49497 -32.19869 -31.90963 -29.64834 -28.29546 -27.41806 -26.05454 -24.90314 -23.90498 -22.56496 -21.58847 -21.35611 -19.49527 -18.91163 -18.76455 -17.41755 -17.12618 -17.02894 -17.01781 -16.75655 -16.01291 -15.72250 -15.58531 -15.15901 -14.81747 -14.57061 -14.27901 -14.21890 -14.10321 -13.72798 -13.36295 -13.23417 -13.05459 -12.91353 -12.69237 -12.63961 -12.19537 -12.17232 -12.09604 -11.88447 -11.71640 -11.54367 -11.50211 -11.02155 -10.78493 -10.71175 -10.10686 -9.62060 -8.95238 -7.86702 -5.24996 -0.42872 0.22582 1.43216 1.45237 1.55761 1.65614 1.97195 2.09214 2.47689 2.77224 2.94412 3.32103 3.55126 3.70425 3.85614 3.92670 4.01767 4.02088 4.07073 4.24980 4.42397 4.45051 4.46850 4.49450 4.58014 4.69065 4.80287 4.86291 4.93323 5.02870 5.05495 5.09469 5.16495 5.25617 5.33470 5.42842 5.46591 5.56767 5.73487 6.09776 6.14071 6.36154 6.65950 7.03101 7.11294 7.73191 8.37345 9.23106 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.003870 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.948034 B = 7232.620063 C = 7643.969874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.301 3.699 4 C -0.156 4.156 5 C -0.033 4.033 6 C -0.152 4.152 7 C 0.098 3.902 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.683 5.683 11 C 0.132 3.868 12 H 0.080 0.920 13 C 0.190 3.810 14 N -0.627 5.627 15 C -0.241 4.241 16 H 0.091 0.909 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.134 3.866 24 C -0.094 4.094 25 H 0.088 0.912 26 C -0.128 4.128 27 N -0.530 5.530 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.180 0.820 32 H 0.193 0.807 33 H 0.149 0.851 34 H 0.414 0.586 35 H 0.013 0.987 36 H -0.007 1.007 37 H 0.244 0.756 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -15.400 -13.119 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.119 3.881 4 C -0.176 4.176 5 C -0.058 4.058 6 C -0.174 4.174 7 C -0.037 4.037 8 C 0.348 3.652 9 O -0.447 6.447 10 N -0.332 5.332 11 C 0.026 3.974 12 H 0.098 0.902 13 C 0.064 3.936 14 N -0.354 5.354 15 C -0.370 4.370 16 H 0.109 0.891 17 C -0.263 4.263 18 N -0.605 5.605 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.219 1.219 22 H -0.222 1.222 23 C 0.009 3.991 24 C -0.114 4.114 25 H 0.106 0.894 26 C -0.185 4.185 27 N -0.258 5.258 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.211 0.789 33 H 0.167 0.833 34 H 0.251 0.749 35 H 0.031 0.969 36 H 0.012 0.988 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.110 -14.875 -12.932 20.954 hybrid contribution 0.091 0.519 1.411 1.506 sum 7.202 -14.356 -11.522 19.766 Atomic orbital electron populations 1.23073 0.76035 1.04839 1.02170 1.86237 1.24091 1.23564 1.87891 1.20201 0.90595 0.84217 0.93101 1.21742 0.91094 1.01345 1.03415 1.21900 1.02648 0.89225 0.92048 1.22204 0.92382 1.02287 1.00547 1.20540 0.92775 0.89443 1.00960 1.18360 0.82781 0.87940 0.76110 1.90764 1.74510 1.27579 1.51811 1.45646 1.05206 1.10183 1.72209 1.22202 0.91093 0.87332 0.96734 0.90208 1.21072 0.85108 0.95719 0.91749 1.44725 1.08715 1.76170 1.05792 1.19584 0.95387 1.35103 0.86905 0.89137 1.25750 0.96994 1.02490 1.01065 1.70254 1.10890 1.54869 1.24448 0.84960 0.78234 0.76923 0.78930 1.18309 1.21930 1.22208 1.21889 0.96692 0.95941 0.84609 1.22578 0.92048 0.99772 0.96988 0.89392 1.21643 1.03161 1.02135 0.91598 1.66987 1.41902 0.98346 1.18528 0.92138 0.85636 0.93283 0.80264 0.78948 0.83317 0.74859 0.96855 0.98845 0.94671 0.92478 0.95303 0.91785 0.90098 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.38 113.37 1.18 1.76 16 2 O -0.31 -6.52 10.48 -89.76 -0.94 -7.46 16 3 C 0.30 6.96 7.49 84.94 0.64 7.60 16 4 C -0.16 -2.58 10.05 22.54 0.23 -2.36 16 5 C -0.03 -0.53 10.16 22.42 0.23 -0.30 16 6 C -0.15 -3.75 9.63 22.62 0.22 -3.53 16 7 C 0.10 3.02 6.75 41.84 0.28 3.31 16 8 C 0.56 21.41 7.81 86.88 0.68 22.09 16 9 O -0.57 -25.50 16.00 -3.77 -0.06 -25.56 16 10 N -0.68 -24.84 5.10 -439.50 -2.24 -27.09 16 11 C 0.13 5.38 2.74 46.18 0.13 5.51 16 12 H 0.08 3.42 7.51 -2.39 -0.02 3.40 16 13 C 0.19 10.23 5.13 86.73 0.44 10.68 16 14 N -0.63 -33.51 3.40 -691.57 -2.35 -35.85 16 15 C -0.24 -13.90 10.28 84.03 0.86 -13.03 16 16 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 17 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 18 N -0.96 -61.20 10.31 21.65 0.22 -60.98 16 19 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 23 C 0.13 5.40 6.72 86.93 0.58 5.99 16 24 C -0.09 -3.11 3.27 -9.33 -0.03 -3.14 16 25 H 0.09 2.76 8.00 -2.39 -0.02 2.74 16 26 C -0.13 -3.13 9.31 71.98 0.67 -2.46 16 27 N -0.53 -14.77 8.39 -298.20 -2.50 -17.27 16 28 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.15 3.67 7.63 -2.91 -0.02 3.65 16 34 H 0.41 13.28 7.87 -92.70 -0.73 12.55 16 35 H 0.01 0.80 7.27 -2.39 -0.02 0.78 16 36 H -0.01 -0.43 7.50 -2.39 -0.02 -0.45 16 37 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.03 1.15 7.99 -2.38 -0.02 1.13 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 Total: -1.00 -79.21 352.62 1.03 -78.18 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.30 Total: 18.30 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 6.57 Total: 28.40 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -6.87 Total: -141.19 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.00 Total: -33.02 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -79.21 1.03 -78.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080700109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.567 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds