Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99880 * 2 1 4 4 H 1.09000 * 110.91432 * 32.44708 * 3 2 1 5 5 C 1.54909 * 111.00232 * 268.54607 * 3 2 1 6 6 N 1.47429 * 104.83064 * 204.91511 * 5 3 2 7 7 C 1.36931 * 125.65038 * 204.09025 * 6 5 3 8 8 H 1.08002 * 120.00438 * 180.02562 * 7 6 5 9 9 C 1.38817 * 119.99680 * 359.74937 * 7 6 5 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48498 * 109.47174 * 90.00121 * 11 9 7 13 13 H 1.48501 * 109.47062 * 210.00072 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99871 * 11 9 7 15 15 C 1.47023 * 108.70139 * 24.35611 * 6 5 3 16 16 C 1.54332 * 107.26961 * 358.58464 * 15 6 5 17 17 H 1.08998 * 110.51709 * 96.44815 * 16 15 6 18 18 N 1.46500 * 110.85454 * 219.67508 * 16 15 6 19 19 C 1.34778 * 119.99774 * 268.69277 * 18 16 15 20 20 O 1.21282 * 119.99891 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99956 * 179.97438 * 19 18 16 22 22 C 1.50702 * 109.47282 * 179.97438 * 21 19 18 23 23 C 1.38668 * 120.41709 * 89.99939 * 22 21 19 24 24 C 1.38628 * 118.41694 * 180.02562 * 23 22 21 25 25 C 1.38221 * 119.16286 * 359.97438 * 24 23 22 26 26 N 1.31857 * 120.76619 * 0.02562 * 25 24 23 27 27 C 1.31885 * 121.71950 * 359.70168 * 26 25 24 28 28 H 1.08996 * 109.46982 * 60.00146 * 1 2 3 29 29 H 1.08999 * 109.46819 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46844 * 300.00235 * 1 2 3 31 31 H 1.08998 * 110.36882 * 86.07808 * 5 3 2 32 32 H 1.08998 * 110.45595 * 323.80042 * 5 3 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 34 34 H 1.08999 * 109.88097 * 118.12967 * 15 6 5 35 35 H 1.08998 * 109.88079 * 239.29105 * 15 6 5 36 36 H 0.97000 * 120.00009 * 88.68359 * 18 16 15 37 37 H 1.09005 * 109.46712 * 299.99829 * 21 19 18 38 38 H 1.08998 * 109.47120 * 59.99663 * 21 19 18 39 39 H 1.08004 * 120.79046 * 0.02562 * 23 22 21 40 40 H 1.08001 * 120.41863 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.61996 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.61517 * 180.31046 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3835 2.0104 0.5463 5 6 2.2696 1.7978 -1.4457 6 7 3.3611 2.7807 -1.3196 7 6 3.6236 3.7988 -2.1968 8 1 4.4510 4.4687 -2.0148 9 6 2.8298 3.9663 -3.3233 10 7 1.8216 3.1499 -3.5451 11 14 3.1927 5.3504 -4.5241 12 1 4.1354 4.8681 -5.5652 13 1 1.9290 5.7920 -5.1670 14 1 3.8021 6.4915 -3.7948 15 6 4.1249 2.4829 -0.0991 16 6 3.4486 1.2739 0.5811 17 1 3.9550 0.3486 0.3068 18 7 3.4234 1.4411 2.0363 19 6 4.4340 0.9603 2.7874 20 8 5.3639 0.3889 2.2586 21 6 4.4084 1.1327 4.2843 22 6 5.6437 0.5106 4.8828 23 6 6.7969 1.2619 5.0515 24 6 7.9093 0.6477 5.6057 25 6 7.8323 -0.6836 5.9695 26 7 6.7186 -1.3674 5.7944 27 6 5.6397 -0.8143 5.2752 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.3761 2.2730 -1.8507 32 1 2.5781 0.9677 -2.0812 33 1 1.2667 3.2672 -4.3321 34 1 5.1550 2.2370 -0.3573 35 1 4.1036 3.3426 0.5706 36 1 2.6795 1.8979 2.4593 37 1 4.3820 2.1950 4.5272 38 1 3.5227 0.6448 4.6911 39 1 6.8277 2.3009 4.7582 40 1 8.8242 1.2025 5.7521 41 1 8.6943 -1.1693 6.4023 42 1 4.7440 -1.4050 5.1515 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081543502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = -11.979755 kcal Electronic energy + Delta-G solvation = -24728.070044 eV Core-core repulsion = 21095.316640 eV Total energy + Delta-G solvation = -3632.753404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51811 -39.48877 -38.08505 -35.94512 -34.08073 -33.68048 -32.09166 -31.75796 -29.10898 -28.18165 -26.79101 -26.12966 -24.27672 -23.70463 -22.65200 -20.78588 -20.47672 -19.86096 -17.51405 -17.19076 -16.87223 -16.59061 -16.38217 -15.71446 -15.25532 -14.83115 -14.73124 -14.40353 -14.29320 -13.98270 -13.66405 -13.35069 -13.23057 -13.18020 -12.91759 -12.42507 -12.24732 -11.92044 -11.67427 -11.44094 -11.32167 -11.04480 -10.86284 -10.83137 -10.22590 -10.03671 -9.92101 -9.83616 -9.76486 -9.59172 -9.17813 -9.03107 -8.74030 -8.70009 -6.93861 -5.73274 -3.16379 0.95586 1.16685 2.74130 3.24230 3.36546 3.41561 3.43157 3.75912 4.09619 4.25972 4.45990 4.50968 4.62744 4.82643 4.85396 4.90401 5.14836 5.21518 5.23473 5.39392 5.48635 5.49338 5.58929 5.61731 5.66282 5.66622 5.82508 5.94696 5.95595 6.04822 6.09087 6.17816 6.43416 6.55327 6.63453 6.85952 7.22296 7.51346 7.63445 7.69818 7.76572 7.84115 8.22802 8.36421 9.12268 9.72732 10.35161 11.30576 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.003221 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.776733 B = 8689.648937 C = 9833.531802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.103 0.897 18 N -0.715 5.715 19 C 0.513 3.487 20 O -0.532 6.532 21 C -0.099 4.099 22 C -0.113 4.113 23 C -0.061 4.061 24 C -0.172 4.172 25 C 0.093 3.907 26 N -0.485 5.485 27 C 0.113 3.887 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.026 0.974 33 H 0.253 0.747 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.398 0.602 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -3.473 18.899 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.013 3.987 6 N -0.328 5.328 7 C -0.352 4.352 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.121 0.879 18 N -0.366 5.366 19 C 0.298 3.702 20 O -0.408 6.408 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.087 4.087 24 C -0.192 4.192 25 C -0.064 4.064 26 N -0.194 5.194 27 C -0.044 4.044 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.232 0.768 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.376 -4.859 18.561 19.333 hybrid contribution -0.314 2.048 -0.805 2.223 sum 2.062 -2.812 17.756 18.095 Atomic orbital electron populations 1.22696 0.81547 1.01913 1.00024 1.87848 1.19279 1.27697 1.95137 1.24014 0.92177 0.83771 1.00495 0.91594 1.22326 0.95324 0.91913 0.89087 1.44307 1.31636 1.33106 1.23761 1.19095 1.11314 1.04219 1.00554 0.90207 1.24808 0.98054 0.99348 0.98333 1.69755 1.19991 1.38722 1.28650 0.86030 0.77102 0.81132 0.80970 1.21500 1.21608 1.20633 1.21603 0.95124 0.93628 0.89280 1.22115 0.96418 1.00403 0.77878 0.87938 1.45984 1.23856 1.59117 1.07631 1.20401 0.82423 0.78666 0.88660 1.90746 1.34220 1.41707 1.74132 1.20618 0.97356 1.03330 0.92700 1.20302 0.95722 0.95699 0.99834 1.21462 0.92054 1.00354 0.94878 1.22103 0.99441 0.96738 1.00884 1.22739 0.95806 0.91485 0.96348 1.67680 0.99780 1.38638 1.13257 1.22597 0.96609 0.91681 0.93558 0.93409 0.90331 0.94811 0.87036 0.95576 0.93577 0.94960 0.95276 0.76833 0.87672 0.87598 0.84916 0.84808 0.82921 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.89 101.05 1.10 1.59 16 2 O -0.38 -6.88 10.51 -35.23 -0.37 -7.25 16 3 C 0.05 1.03 3.12 -24.58 -0.08 0.95 16 4 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 5 C 0.14 3.35 5.62 -2.53 -0.01 3.33 16 6 N -0.60 -15.25 3.39 -170.07 -0.58 -15.82 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 10 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 11 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.13 2.79 7.00 -3.06 -0.02 2.77 16 16 C 0.14 2.52 3.04 -66.09 -0.20 2.32 16 17 H 0.10 2.14 7.55 -51.93 -0.39 1.74 16 18 N -0.72 -9.99 5.11 -52.03 -0.27 -10.25 16 19 C 0.51 7.22 7.82 -10.99 -0.09 7.13 16 20 O -0.53 -9.99 15.68 5.56 0.09 -9.90 16 21 C -0.10 -0.92 5.86 -29.03 -0.17 -1.09 16 22 C -0.11 -1.25 4.39 -104.48 -0.46 -1.71 16 23 C -0.06 -0.64 9.86 -39.28 -0.39 -1.03 16 24 C -0.17 -1.65 10.11 -39.44 -0.40 -2.04 16 25 C 0.09 0.97 11.18 -17.55 -0.20 0.78 16 26 N -0.49 -6.14 10.36 -13.25 -0.14 -6.28 16 27 C 0.11 1.33 10.86 -17.55 -0.19 1.14 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.40 4.28 8.56 -40.82 -0.35 3.93 16 37 H 0.11 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -34.37 354.57 -7.79 -42.16 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.06 Total: 3.60 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.35 Total: 7.46 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.42 Total: -58.12 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.28 Total: -17.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.37 -7.79 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081543502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.183 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds