Wall clock time and date at job start Fri Apr 10 2020 17:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35687 * 116.99660 * 2 1 4 4 C 1.38900 * 119.62034 * 180.25497 * 3 2 1 5 5 C 1.39573 * 118.94062 * 180.31346 * 4 3 2 6 6 C 1.48160 * 120.88858 * 179.71257 * 5 4 3 7 7 O 1.21517 * 120.00332 * 36.19703 * 6 5 4 8 8 N 1.34780 * 120.00448 * 216.19510 * 6 5 4 9 9 C 1.46505 * 119.99645 * 356.25745 * 8 6 5 10 10 C 1.46497 * 120.00651 * 176.26040 * 8 6 5 11 11 C 1.52997 * 109.47442 * 95.69336 * 10 8 6 12 12 H 1.08998 * 113.03858 * 66.04476 * 11 10 8 13 13 C 1.53944 * 113.77022 * 294.29653 * 11 10 8 14 14 C 1.53948 * 86.28995 * 222.08989 * 13 11 10 15 15 N 1.47577 * 113.77203 * 197.79717 * 11 10 8 16 16 C 1.36935 * 134.49322 * 318.94686 * 15 11 10 17 17 H 1.07992 * 119.99800 * 5.19638 * 16 15 11 18 18 C 1.38819 * 119.99848 * 185.19467 * 16 15 11 19 19 N 1.31620 * 119.99857 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99648 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47232 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46940 * 120.00289 * 20 18 16 23 23 H 1.48499 * 109.46641 * 240.00058 * 20 18 16 24 24 C 1.39969 * 118.22016 * 359.44273 * 5 4 3 25 25 C 1.37974 * 119.13331 * 0.27334 * 24 5 4 26 26 N 1.31913 * 120.97912 * 0.02562 * 25 24 5 27 27 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47283 * 299.99798 * 1 2 3 29 29 H 1.08992 * 109.47498 * 60.00068 * 1 2 3 30 30 H 1.07998 * 120.53039 * 0.05574 * 4 3 2 31 31 H 1.09000 * 109.47415 * 274.99306 * 9 8 6 32 32 H 1.08999 * 109.47120 * 34.98682 * 9 8 6 33 33 H 1.08996 * 109.47354 * 154.98832 * 9 8 6 34 34 H 1.09003 * 109.46750 * 335.69454 * 10 8 6 35 35 H 1.08994 * 109.47512 * 215.69855 * 10 8 6 36 36 H 1.09001 * 113.74640 * 336.43638 * 13 11 10 37 37 H 1.09005 * 113.74183 * 107.63667 * 13 11 10 38 38 H 1.08995 * 113.76841 * 137.90913 * 14 13 11 39 39 H 1.09007 * 113.76565 * 269.19124 * 14 13 11 40 40 H 0.96996 * 119.99358 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.43355 * 180.24599 * 24 5 4 42 42 H 1.08000 * 119.51315 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2726 -0.0054 5 6 4.0513 2.5236 0.0014 6 6 5.5282 2.6417 0.0024 7 8 6.2017 1.8469 -0.6231 8 7 6.1248 3.6307 0.6971 9 6 5.3113 4.6372 1.3838 10 6 7.5865 3.6993 0.7654 11 6 8.1029 4.6587 -0.3087 12 1 7.8040 5.6927 -0.1364 13 6 7.8527 4.1720 -1.7475 14 6 9.2802 4.6600 -2.0543 15 7 9.5384 4.4969 -0.6104 16 6 10.6597 4.2816 0.1456 17 1 10.5700 4.1125 1.2084 18 6 11.9116 4.2809 -0.4543 19 7 12.0208 4.4875 -1.7495 20 14 13.4411 3.9865 0.5770 21 1 13.0502 3.7815 1.9949 22 1 14.1487 2.7795 0.0795 23 1 14.3401 5.1641 0.4762 24 6 3.2392 3.6637 0.0013 25 6 1.8679 3.5116 0.0004 26 7 1.3177 2.3127 0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0231 0.3685 -0.0104 31 1 5.0472 5.4301 0.6840 32 1 4.4025 4.1716 1.7649 33 1 5.8789 5.0589 2.2132 34 1 8.0050 2.7069 0.5977 35 1 7.8878 4.0591 1.7492 36 1 7.7307 3.0921 -1.8307 37 1 7.0749 4.7289 -2.2702 38 1 9.8522 3.9776 -2.6828 39 1 9.3269 5.6939 -2.3967 40 1 12.8956 4.4873 -2.1685 41 1 3.6803 4.6495 0.0025 42 1 1.2355 4.3871 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085688400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:44 Heat of formation + Delta-G solvation = 43.072787 kcal Electronic energy + Delta-G solvation = -24873.467977 eV Core-core repulsion = 21243.101830 eV Total energy + Delta-G solvation = -3630.366147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12758 -39.75070 -38.09503 -37.51720 -35.43698 -32.92069 -32.08570 -31.11621 -28.55961 -27.78158 -27.71518 -26.68872 -24.42441 -23.49637 -23.21024 -22.22249 -20.05694 -18.95452 -18.25843 -17.50985 -16.75837 -16.46046 -16.32779 -16.03585 -15.95414 -15.38144 -14.75671 -14.51603 -14.37162 -13.91148 -13.75245 -13.51008 -13.39316 -13.21600 -12.71872 -12.37604 -12.29799 -12.08698 -11.75118 -11.45510 -11.36912 -11.02104 -10.89491 -10.67398 -10.45424 -10.26789 -10.11229 -9.84003 -9.70044 -9.62473 -9.43958 -8.80313 -8.75853 -8.41526 -6.81837 -5.72283 -3.04162 0.58345 0.86669 2.60683 2.81416 3.10256 3.41453 3.46118 3.49098 3.53056 3.98588 4.25527 4.49975 4.66668 4.76431 4.81333 4.97359 5.01866 5.04332 5.23935 5.29688 5.31747 5.40814 5.45461 5.49516 5.56753 5.62256 5.82163 5.88374 5.94519 6.01256 6.11225 6.38806 6.54443 6.66851 6.78102 6.83865 6.91567 7.32115 7.39989 7.50285 7.56363 7.65933 8.03386 8.18482 9.09028 9.75706 10.66565 11.45411 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.002906 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.228463 B = 9632.514069 C = 9787.800889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.306 6.306 3 C 0.317 3.683 4 C -0.138 4.138 5 C -0.040 4.040 6 C 0.554 3.446 7 O -0.511 6.511 8 N -0.598 5.598 9 C 0.071 3.929 10 C 0.116 3.884 11 C 0.128 3.872 12 H 0.042 0.958 13 C -0.160 4.160 14 C 0.165 3.835 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C -0.190 4.190 25 C 0.135 3.865 26 N -0.532 5.532 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.151 0.849 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.153 0.847 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.322 -1.644 5.579 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.138 3.862 4 C -0.160 4.160 5 C -0.051 4.051 6 C 0.340 3.660 7 O -0.387 6.387 8 N -0.331 5.331 9 C -0.072 4.072 10 C -0.007 4.007 11 C 0.020 3.980 12 H 0.059 0.941 13 C -0.198 4.198 14 C 0.039 3.961 15 N -0.326 5.326 16 C -0.350 4.350 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.210 4.210 25 C -0.020 4.020 26 N -0.256 5.256 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.169 0.831 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.171 0.829 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -24.363 -2.464 5.309 25.056 hybrid contribution 1.508 0.403 0.562 1.659 sum -22.855 -2.061 5.870 23.686 Atomic orbital electron populations 1.22869 0.77086 1.03035 1.02455 1.86267 1.22987 1.24241 1.87789 1.19647 0.88952 0.84819 0.92746 1.21088 0.91946 0.98913 1.04014 1.20192 0.94286 0.93276 0.97374 1.18090 0.86325 0.81540 0.80059 1.90840 1.64571 1.41920 1.41323 1.47687 1.07835 1.26949 1.50615 1.22188 0.96111 0.91576 0.97349 1.21941 0.76070 1.02937 0.99754 1.22512 0.86905 0.95202 0.93397 0.94084 1.23855 0.98229 1.01628 0.96075 1.22106 0.89543 0.97349 0.87064 1.45971 1.00187 1.83287 1.03190 1.19025 0.83358 1.41449 0.91213 0.90336 1.24803 0.97274 1.02259 0.96090 1.69852 1.22630 1.55494 1.08621 0.86087 0.83364 0.77385 0.79169 1.20486 1.21725 1.21815 1.22601 0.94752 0.99920 1.03743 1.22368 0.92538 0.93565 0.93551 1.67172 1.41257 0.98954 1.18226 0.88560 0.92269 0.92227 0.83140 0.92038 0.90915 0.90564 0.88737 0.91075 0.89471 0.94011 0.91569 0.95677 0.93731 0.82922 0.81761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.38 10.47 -18.76 -0.20 -3.57 16 3 C 0.32 3.73 7.49 -17.16 -0.13 3.60 16 4 C -0.14 -1.73 9.66 -38.84 -0.38 -2.10 16 5 C -0.04 -0.50 5.31 -104.68 -0.56 -1.06 16 6 C 0.55 8.53 7.07 -12.18 -0.09 8.44 16 7 O -0.51 -9.98 14.67 5.35 0.08 -9.90 16 8 N -0.60 -8.42 2.80 -182.58 -0.51 -8.93 16 9 C 0.07 0.66 8.89 59.85 0.53 1.19 16 10 C 0.12 2.04 5.41 -4.04 -0.02 2.02 16 11 C 0.13 2.61 4.58 -66.87 -0.31 2.31 16 12 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.16 -3.32 7.24 -25.80 -0.19 -3.50 16 14 C 0.16 4.09 7.39 -2.97 -0.02 4.07 16 15 N -0.60 -15.58 3.57 -170.75 -0.61 -16.19 16 16 C -0.22 -6.26 10.51 -15.06 -0.16 -6.42 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.93 11.52 55.49 0.64 -27.29 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C -0.19 -1.76 7.68 -39.03 -0.30 -2.06 16 25 C 0.13 1.15 11.17 -17.61 -0.20 0.95 16 26 N -0.53 -5.65 9.18 -13.38 -0.12 -5.77 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.06 0.48 6.84 -51.93 -0.36 0.13 16 32 H 0.07 0.56 5.83 -51.93 -0.30 0.26 16 33 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 34 H 0.09 1.96 7.31 -51.93 -0.38 1.58 16 35 H 0.07 1.16 7.95 -51.93 -0.41 0.75 16 36 H 0.09 1.96 6.45 -51.93 -0.34 1.62 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.82 7.40 -51.93 -0.38 1.43 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.15 1.11 5.17 -52.49 -0.27 0.84 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -34.74 347.24 -7.14 -41.88 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.78 Total: -1.33 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -0.85 Total: 8.48 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.60 Total: -58.19 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.12 Total: -13.47 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.74 -7.14 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085688400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.951 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds