Wall clock time and date at job start Fri Apr 10 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00187 * 2 1 4 4 C 1.52996 * 109.47344 * 275.50779 * 3 2 1 5 5 H 1.09006 * 112.96817 * 69.76531 * 4 3 2 6 6 C 1.53944 * 113.77066 * 298.09122 * 4 3 2 7 7 C 1.53946 * 86.29093 * 222.09282 * 6 4 3 8 8 N 1.47583 * 86.24042 * 23.54466 * 7 6 4 9 9 C 1.36935 * 134.49023 * 155.42175 * 8 7 6 10 10 H 1.08002 * 120.00052 * 186.25482 * 9 8 7 11 11 C 1.38809 * 120.00098 * 6.25619 * 9 8 7 12 12 N 1.31617 * 120.00252 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00054 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 60.00168 * 13 11 9 15 15 H 1.48507 * 109.47221 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47159 * 299.99869 * 13 11 9 17 17 C 1.34779 * 120.00051 * 180.02562 * 2 1 3 18 18 O 1.21625 * 119.99912 * 185.59126 * 17 2 1 19 19 C 1.47278 * 120.00022 * 5.58918 * 17 2 1 20 20 C 1.37996 * 120.88551 * 41.09690 * 19 17 2 21 21 N 1.34343 * 120.37288 * 179.97438 * 20 19 17 22 22 C 1.46506 * 118.80119 * 179.97438 * 21 20 19 23 23 C 1.35586 * 122.39286 * 359.95665 * 21 20 19 24 24 C 1.34860 * 121.79895 * 359.97438 * 23 21 20 25 25 C 1.41677 * 119.33804 * 359.80220 * 24 23 21 26 26 O 1.22082 * 121.06779 * 180.21864 * 25 24 23 27 27 H 1.09002 * 109.46923 * 87.22650 * 1 2 3 28 28 H 1.09007 * 109.46896 * 207.22160 * 1 2 3 29 29 H 1.08998 * 109.47388 * 327.22108 * 1 2 3 30 30 H 1.08996 * 109.47179 * 155.50482 * 3 2 1 31 31 H 1.09003 * 109.46760 * 35.50611 * 3 2 1 32 32 H 1.08997 * 113.74678 * 107.74152 * 6 4 3 33 33 H 1.09004 * 113.83361 * 336.44901 * 6 4 3 34 34 H 1.08998 * 113.77179 * 137.90254 * 7 6 4 35 35 H 1.09001 * 113.76613 * 269.19148 * 7 6 4 36 36 H 0.97000 * 120.00744 * 179.97438 * 12 11 9 37 37 H 1.08002 * 119.80921 * 359.97438 * 20 19 17 38 38 H 1.08999 * 109.47039 * 90.00320 * 22 21 20 39 39 H 1.09000 * 109.46717 * 209.99623 * 22 21 20 40 40 H 1.08994 * 109.47296 * 329.99411 * 22 21 20 41 41 H 1.07999 * 119.09956 * 180.02562 * 23 21 20 42 42 H 1.08000 * 120.33146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3327 1.7797 -1.4358 5 1 1.3853 2.1125 -1.8598 6 6 3.1278 0.8372 -2.3575 7 6 3.7985 2.1074 -2.9113 8 7 3.4405 2.7393 -1.6265 9 6 3.9367 3.7908 -0.9031 10 1 3.5485 3.9988 0.0830 11 6 4.9386 4.5894 -1.4373 12 7 5.4120 4.3357 -2.6388 13 14 5.6149 6.0242 -0.4507 14 1 6.1962 5.5211 0.8197 15 1 6.6679 6.7141 -1.2386 16 1 4.5178 6.9786 -0.1494 17 6 2.1389 -1.1672 -0.0005 18 8 3.3508 -1.1697 0.1021 19 6 1.4078 -2.4396 -0.1253 20 6 0.3507 -2.5660 -1.0033 21 7 -0.3087 -3.7317 -1.1092 22 6 -1.4260 -3.8274 -2.0520 23 6 0.0225 -4.8228 -0.3757 24 6 1.0403 -4.8023 0.5089 25 6 1.7898 -3.6118 0.6771 26 8 2.7200 -3.5592 1.4661 27 1 -0.3633 0.0497 -1.0265 28 1 -0.3633 -0.9139 0.4701 29 1 -0.3634 0.8640 0.5564 30 1 3.1891 1.1158 0.4261 31 1 1.6547 2.0017 0.5969 32 1 2.5105 0.3131 -3.0871 33 1 3.8121 0.1756 -1.8264 34 1 4.8725 2.0052 -3.0664 35 1 3.2836 2.5370 -3.7707 36 1 6.1119 4.8940 -3.0123 37 1 0.0519 -1.7231 -1.6088 38 1 -1.0544 -4.1511 -3.0242 39 1 -2.1528 -4.5506 -1.6817 40 1 -1.9022 -2.8521 -2.1513 41 1 -0.5437 -5.7335 -0.5038 42 1 1.2839 -5.6855 1.0806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085716392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:56 Heat of formation + Delta-G solvation = 43.389471 kcal Electronic energy + Delta-G solvation = -25373.600402 eV Core-core repulsion = 21743.247988 eV Total energy + Delta-G solvation = -3630.352414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28470 -39.38696 -37.98965 -37.36565 -35.06638 -32.80739 -32.33797 -31.90617 -28.47354 -27.72312 -27.31768 -26.47536 -24.59218 -23.18603 -23.13057 -22.13127 -19.69355 -18.87823 -17.81635 -17.63147 -17.05245 -16.53423 -16.24441 -15.75675 -15.56092 -15.15326 -14.67358 -14.60684 -13.94764 -13.89548 -13.76623 -13.53149 -13.29227 -13.01790 -12.95979 -12.59711 -12.40405 -12.25037 -12.23141 -11.82822 -11.28745 -10.94581 -10.78563 -10.61119 -10.37960 -9.95880 -9.78786 -9.71341 -9.62819 -9.40434 -9.17633 -8.68876 -8.24549 -8.09704 -6.75127 -5.66011 -2.97434 0.78226 1.11649 2.09221 3.05393 3.23423 3.47526 3.51786 3.52804 3.72781 3.93789 4.11858 4.39363 4.49699 4.53244 4.57754 4.81618 4.87246 5.04582 5.10850 5.27827 5.35975 5.38896 5.54868 5.55924 5.60289 5.68007 5.94258 6.04014 6.12879 6.22499 6.30951 6.46120 6.50990 6.64594 6.83315 6.86937 6.90665 7.37682 7.57245 7.70556 7.73494 8.06437 8.09637 8.60882 9.15487 9.82075 10.73214 11.51814 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025718 B = 0.003429 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.463565 B = 8163.027507 C = 8533.324420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.040 0.960 6 C -0.160 4.160 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.576 3.424 18 O -0.505 6.505 19 C -0.287 4.287 20 C 0.162 3.838 21 N -0.478 5.478 22 C 0.055 3.945 23 C 0.127 3.873 24 C -0.269 4.269 25 C 0.407 3.593 26 O -0.489 6.489 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.253 0.747 37 H 0.171 0.829 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.163 0.837 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.714 -19.581 -0.600 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.041 3.959 8 N -0.326 5.326 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.363 3.637 18 O -0.378 6.378 19 C -0.298 4.298 20 C 0.033 3.967 21 N -0.165 5.165 22 C -0.086 4.086 23 C 0.003 3.997 24 C -0.294 4.294 25 C 0.293 3.707 26 O -0.370 6.370 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.188 0.812 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.180 0.820 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.473 -19.281 -0.194 28.124 hybrid contribution -0.007 0.957 0.214 0.981 sum -20.480 -18.324 0.020 27.481 Atomic orbital electron populations 1.21890 0.80858 1.02933 1.00968 1.47701 1.06193 1.06345 1.74421 1.21830 0.98131 0.82173 0.98566 1.22554 0.92424 0.89985 0.92962 0.94231 1.23822 0.99651 0.97761 0.98612 1.22077 0.99235 0.86381 0.88241 1.45962 1.31154 1.34502 1.20969 1.18942 1.15546 1.03380 0.97071 0.90428 1.24787 0.99789 0.99195 0.96598 1.69826 1.30531 1.40593 1.15831 0.86239 0.78389 0.82307 0.79081 1.21032 1.21641 1.21285 1.17461 0.86969 0.82215 0.77056 1.90849 1.13354 1.86338 1.47284 1.22535 1.01514 0.98800 1.06961 1.22401 0.90306 0.88277 0.95763 1.42667 1.29169 1.09326 1.35334 1.22472 0.87808 1.05352 0.92962 1.21670 0.96710 0.90063 0.91282 1.22442 1.00238 1.01944 1.04769 1.18220 0.84092 0.86218 0.82192 1.90821 1.27280 1.85099 1.33805 0.93103 0.91517 0.90945 0.88636 0.91547 0.94138 0.89723 0.91724 0.95700 0.93700 0.81153 0.90102 0.89025 0.88959 0.81972 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.00 59.85 0.54 1.30 16 2 N -0.61 -9.61 2.76 -182.90 -0.50 -10.12 16 3 C 0.12 2.24 5.53 -4.04 -0.02 2.21 16 4 C 0.13 2.72 4.60 -66.74 -0.31 2.41 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.40 7.20 -25.79 -0.19 -3.58 16 7 C 0.17 4.21 7.36 -2.97 -0.02 4.18 16 8 N -0.60 -16.05 3.58 -169.73 -0.61 -16.66 16 9 C -0.22 -6.44 10.52 -15.06 -0.16 -6.59 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.51 11.56 55.49 0.64 -27.87 16 13 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 C 0.58 10.48 6.60 -12.58 -0.08 10.40 16 18 O -0.50 -11.97 14.65 -4.53 -0.07 -12.03 16 19 C -0.29 -4.05 5.12 -102.72 -0.53 -4.57 16 20 C 0.16 1.34 8.02 -16.54 -0.13 1.21 16 21 N -0.48 -2.41 2.97 -124.39 -0.37 -2.78 16 22 C 0.06 0.02 10.53 59.85 0.63 0.65 16 23 C 0.13 0.69 10.17 -17.09 -0.17 0.51 16 24 C -0.27 -2.65 10.01 -39.47 -0.40 -3.05 16 25 C 0.41 6.36 6.94 -34.68 -0.24 6.12 16 26 O -0.49 -10.28 17.09 -4.94 -0.08 -10.37 16 27 H 0.05 0.38 7.11 -51.93 -0.37 0.01 16 28 H 0.07 0.55 6.13 -51.93 -0.32 0.23 16 29 H 0.07 0.67 7.98 -51.93 -0.41 0.25 16 30 H 0.10 2.23 7.20 -51.93 -0.37 1.85 16 31 H 0.07 1.18 7.99 -51.93 -0.41 0.76 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.99 6.69 -51.93 -0.35 1.64 16 34 H 0.06 1.81 7.45 -51.93 -0.39 1.43 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.17 1.03 6.03 -52.49 -0.32 0.72 16 38 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.09 -0.15 7.96 -51.93 -0.41 -0.56 16 40 H 0.09 -0.06 7.96 -51.93 -0.41 -0.48 16 41 H 0.16 0.16 7.97 -52.49 -0.42 -0.26 16 42 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -42.35 347.82 -7.79 -50.15 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -5.85 Total: -4.48 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.17 Total: 10.91 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.84 Total: -57.43 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.15 Total: -22.40 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -42.35 -7.79 -50.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085716392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.536 kcal (2) G-P(sol) polarization free energy of solvation -42.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds