Wall clock time and date at job start Fri Apr 10 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00187 * 2 1 4 4 C 1.52996 * 109.47344 * 275.50779 * 3 2 1 5 5 H 1.09006 * 112.96817 * 69.76531 * 4 3 2 6 6 C 1.53944 * 113.77066 * 298.09122 * 4 3 2 7 7 C 1.53946 * 86.29093 * 222.09282 * 6 4 3 8 8 N 1.47583 * 86.24042 * 23.54466 * 7 6 4 9 9 C 1.36935 * 134.49023 * 155.42175 * 8 7 6 10 10 H 1.08002 * 120.00052 * 186.25482 * 9 8 7 11 11 C 1.38809 * 120.00098 * 6.25619 * 9 8 7 12 12 N 1.31617 * 120.00252 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00054 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 60.00168 * 13 11 9 15 15 H 1.48507 * 109.47221 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47159 * 299.99869 * 13 11 9 17 17 C 1.34779 * 120.00051 * 180.02562 * 2 1 3 18 18 O 1.21625 * 119.99912 * 185.59126 * 17 2 1 19 19 C 1.47278 * 120.00022 * 5.58918 * 17 2 1 20 20 C 1.37996 * 120.88551 * 41.09690 * 19 17 2 21 21 N 1.34343 * 120.37288 * 179.97438 * 20 19 17 22 22 C 1.46506 * 118.80119 * 179.97438 * 21 20 19 23 23 C 1.35586 * 122.39286 * 359.95665 * 21 20 19 24 24 C 1.34860 * 121.79895 * 359.97438 * 23 21 20 25 25 C 1.41677 * 119.33804 * 359.80220 * 24 23 21 26 26 O 1.22082 * 121.06779 * 180.21864 * 25 24 23 27 27 H 1.09002 * 109.46923 * 87.22650 * 1 2 3 28 28 H 1.09007 * 109.46896 * 207.22160 * 1 2 3 29 29 H 1.08998 * 109.47388 * 327.22108 * 1 2 3 30 30 H 1.08996 * 109.47179 * 155.50482 * 3 2 1 31 31 H 1.09003 * 109.46760 * 35.50611 * 3 2 1 32 32 H 1.08997 * 113.74678 * 107.74152 * 6 4 3 33 33 H 1.09004 * 113.83361 * 336.44901 * 6 4 3 34 34 H 1.08998 * 113.77179 * 137.90254 * 7 6 4 35 35 H 1.09001 * 113.76613 * 269.19148 * 7 6 4 36 36 H 0.97000 * 120.00744 * 179.97438 * 12 11 9 37 37 H 1.08002 * 119.80921 * 359.97438 * 20 19 17 38 38 H 1.08999 * 109.47039 * 90.00320 * 22 21 20 39 39 H 1.09000 * 109.46717 * 209.99623 * 22 21 20 40 40 H 1.08994 * 109.47296 * 329.99411 * 22 21 20 41 41 H 1.07999 * 119.09956 * 180.02562 * 23 21 20 42 42 H 1.08000 * 120.33146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3327 1.7797 -1.4358 5 1 1.3853 2.1125 -1.8598 6 6 3.1278 0.8372 -2.3575 7 6 3.7985 2.1074 -2.9113 8 7 3.4405 2.7393 -1.6265 9 6 3.9367 3.7908 -0.9031 10 1 3.5485 3.9988 0.0830 11 6 4.9386 4.5894 -1.4373 12 7 5.4120 4.3357 -2.6388 13 14 5.6149 6.0242 -0.4507 14 1 6.1962 5.5211 0.8197 15 1 6.6679 6.7141 -1.2386 16 1 4.5178 6.9786 -0.1494 17 6 2.1389 -1.1672 -0.0005 18 8 3.3508 -1.1697 0.1021 19 6 1.4078 -2.4396 -0.1253 20 6 0.3507 -2.5660 -1.0033 21 7 -0.3087 -3.7317 -1.1092 22 6 -1.4260 -3.8274 -2.0520 23 6 0.0225 -4.8228 -0.3757 24 6 1.0403 -4.8023 0.5089 25 6 1.7898 -3.6118 0.6771 26 8 2.7200 -3.5592 1.4661 27 1 -0.3633 0.0497 -1.0265 28 1 -0.3633 -0.9139 0.4701 29 1 -0.3634 0.8640 0.5564 30 1 3.1891 1.1158 0.4261 31 1 1.6547 2.0017 0.5969 32 1 2.5105 0.3131 -3.0871 33 1 3.8121 0.1756 -1.8264 34 1 4.8725 2.0052 -3.0664 35 1 3.2836 2.5370 -3.7707 36 1 6.1119 4.8940 -3.0123 37 1 0.0519 -1.7231 -1.6088 38 1 -1.0544 -4.1511 -3.0242 39 1 -2.1528 -4.5506 -1.6817 40 1 -1.9022 -2.8521 -2.1513 41 1 -0.5437 -5.7335 -0.5038 42 1 1.2839 -5.6855 1.0806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085716392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:55 Heat of formation + Delta-G solvation = 11.017522 kcal Electronic energy + Delta-G solvation = -25375.004155 eV Core-core repulsion = 21743.247988 eV Total energy + Delta-G solvation = -3631.756167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07915 -40.68343 -39.34983 -38.79548 -36.42548 -34.26864 -33.49299 -33.02416 -29.87853 -29.78475 -27.86955 -27.34195 -25.63151 -25.23756 -24.18667 -23.42593 -21.02893 -20.59169 -18.82181 -18.60711 -18.26306 -17.83899 -17.42674 -16.83139 -16.59888 -16.48396 -16.27203 -15.79128 -15.39851 -15.13304 -14.94185 -14.72803 -14.30894 -14.05619 -14.00560 -13.72860 -13.40525 -13.35165 -13.14904 -13.04862 -12.91305 -12.61674 -12.55690 -12.49083 -12.30189 -11.83571 -11.59729 -11.23932 -11.07141 -10.84478 -10.58347 -10.36392 -9.61800 -9.00118 -8.85852 -7.89541 -5.21639 -0.03932 0.41416 1.42336 1.47640 1.52686 1.57315 1.84862 2.03995 2.49936 2.75775 3.30972 3.39790 3.43350 3.61670 3.83944 3.89755 3.98103 4.10091 4.28473 4.32778 4.38147 4.49493 4.51745 4.64037 4.66809 4.71312 4.79188 4.85012 4.86605 4.90334 4.98062 5.01080 5.10625 5.23707 5.36486 5.52159 5.59895 5.76551 5.78626 5.86852 5.95797 6.51202 6.92745 7.11177 7.34246 7.62618 8.59731 9.28610 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025718 B = 0.003429 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.463565 B = 8163.027507 C = 8533.324420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.128 3.872 4 C 0.141 3.859 5 H 0.077 0.923 6 C -0.135 4.135 7 C 0.161 3.839 8 N -0.632 5.632 9 C -0.229 4.229 10 H 0.084 0.916 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.977 3.023 14 H -0.283 1.283 15 H -0.294 1.294 16 H -0.270 1.270 17 C 0.569 3.431 18 O -0.584 6.584 19 C -0.344 4.344 20 C 0.214 3.786 21 N -0.458 5.458 22 C 0.041 3.959 23 C 0.172 3.828 24 C -0.304 4.304 25 C 0.379 3.621 26 O -0.586 6.586 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.029 0.971 36 H 0.247 0.753 37 H 0.207 0.793 38 H 0.096 0.904 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.227 0.773 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.824 -21.043 -2.432 34.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.003 3.997 4 C 0.034 3.966 5 H 0.094 0.906 6 C -0.173 4.173 7 C 0.036 3.964 8 N -0.359 5.359 9 C -0.358 4.358 10 H 0.101 0.899 11 C -0.264 4.264 12 N -0.606 5.606 13 Si 0.805 3.195 14 H -0.210 1.210 15 H -0.220 1.220 16 H -0.195 1.195 17 C 0.359 3.641 18 O -0.463 6.463 19 C -0.355 4.355 20 C 0.080 3.920 21 N -0.140 5.140 22 C -0.098 4.098 23 C 0.046 3.954 24 C -0.327 4.327 25 C 0.273 3.727 26 O -0.476 6.476 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.224 0.776 38 H 0.114 0.886 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.244 0.756 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.750 -20.787 -2.057 33.940 hybrid contribution 1.601 1.261 0.638 2.136 sum -25.149 -19.526 -1.419 31.871 Atomic orbital electron populations 1.22330 0.76652 1.04532 1.03999 1.47718 1.08550 1.04197 1.73504 1.21397 0.96510 0.84362 0.97411 1.22726 0.92176 0.87785 0.93893 0.90603 1.23505 0.99083 0.95948 0.98776 1.22019 0.97174 0.88812 0.88410 1.46316 1.33501 1.34705 1.21373 1.19360 1.15381 1.03431 0.97603 0.89857 1.25658 1.00622 1.02254 0.97893 1.70022 1.31267 1.41720 1.17579 0.85171 0.77801 0.79188 0.77313 1.20980 1.22022 1.19514 1.18198 0.86384 0.83992 0.75476 1.90797 1.17004 1.87536 1.50986 1.22041 1.05333 0.96701 1.11418 1.22689 0.87039 0.90141 0.92174 1.43366 1.28633 1.07914 1.34131 1.23047 0.86394 1.08060 0.92265 1.22453 0.94005 0.91541 0.87406 1.22314 1.02206 1.00187 1.08003 1.19104 0.83606 0.88561 0.81424 1.90763 1.31706 1.86710 1.38400 0.88989 0.89702 0.89843 0.94120 0.89803 0.89571 0.92847 0.95974 0.95286 0.94416 0.77628 0.88556 0.85618 0.86723 0.75623 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 9.00 127.77 1.15 2.17 16 2 N -0.61 -18.63 2.76 -850.82 -2.35 -20.97 16 3 C 0.13 5.00 5.53 86.38 0.48 5.47 16 4 C 0.14 5.81 4.60 45.05 0.21 6.01 16 5 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 6 C -0.13 -5.73 7.20 31.25 0.22 -5.51 16 7 C 0.16 8.42 7.36 86.48 0.64 9.06 16 8 N -0.63 -34.60 3.58 -690.92 -2.47 -37.07 16 9 C -0.23 -13.65 10.52 84.03 0.88 -12.77 16 10 H 0.08 4.71 7.83 -2.91 -0.02 4.68 16 11 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.96 -61.60 11.56 21.65 0.25 -61.35 16 13 Si 0.98 48.71 29.55 68.60 2.03 50.74 16 14 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 C 0.57 21.69 6.60 86.62 0.57 22.26 16 18 O -0.58 -30.67 14.65 5.25 0.08 -30.60 16 19 C -0.34 -9.64 5.12 -18.63 -0.10 -9.73 16 20 C 0.21 2.53 8.02 84.25 0.68 3.21 16 21 N -0.46 -1.56 2.97 -547.46 -1.63 -3.18 16 22 C 0.04 -0.32 10.53 127.77 1.35 1.02 16 23 C 0.17 0.89 10.17 83.34 0.85 1.73 16 24 C -0.30 -5.65 10.01 22.34 0.22 -5.43 16 25 C 0.38 12.68 6.94 25.45 0.18 12.85 16 26 O -0.59 -27.97 17.09 3.77 0.06 -27.91 16 27 H 0.09 0.72 7.11 -2.39 -0.02 0.70 16 28 H 0.08 1.03 6.13 -2.38 -0.01 1.02 16 29 H 0.08 1.17 7.98 -2.39 -0.02 1.15 16 30 H 0.04 2.04 7.20 -2.39 -0.02 2.03 16 31 H 0.08 2.93 7.99 -2.39 -0.02 2.91 16 32 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.05 2.65 6.69 -2.39 -0.02 2.63 16 34 H 0.02 1.31 7.45 -2.39 -0.02 1.29 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.21 1.00 6.03 -2.91 -0.02 0.99 16 38 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.13 -1.64 7.96 -2.39 -0.02 -1.66 16 40 H 0.11 -1.23 7.96 -2.39 -0.02 -1.25 16 41 H 0.23 -1.54 7.97 -2.91 -0.02 -1.56 16 42 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -111.43 347.82 4.79 -106.63 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: 1.03 Total: -2.75 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 7.79 Total: 26.46 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -6.20 Total: -122.57 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: 0.14 Total: -58.50 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -111.43 4.79 -106.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085716392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.651 kcal (2) G-P(sol) polarization free energy of solvation -111.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds