Wall clock time and date at job start Fri Apr 10 2020 17:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99971 * 2 1 4 4 C 1.53007 * 109.46634 * 263.93245 * 3 2 1 5 5 H 1.08999 * 112.95957 * 286.43257 * 4 3 2 6 6 C 1.53941 * 113.77335 * 58.11547 * 4 3 2 7 7 C 1.53944 * 86.29138 * 137.90587 * 6 4 3 8 8 N 1.47583 * 113.76562 * 154.76301 * 4 3 2 9 9 C 1.36929 * 134.49937 * 41.06383 * 8 4 3 10 10 H 1.08010 * 119.99897 * 4.62340 * 9 8 4 11 11 C 1.38813 * 120.00481 * 184.62575 * 9 8 4 12 12 N 1.31623 * 119.99621 * 5.70045 * 11 9 8 13 13 Si 1.86797 * 120.00163 * 185.69711 * 11 9 8 14 14 H 1.48504 * 109.47308 * 5.00965 * 13 11 9 15 15 H 1.48505 * 109.46766 * 125.00984 * 13 11 9 16 16 H 1.48496 * 109.47087 * 245.00570 * 13 11 9 17 17 C 1.34773 * 120.00243 * 179.97438 * 2 1 3 18 18 O 1.21542 * 120.00254 * 189.53986 * 17 2 1 19 19 C 1.47889 * 120.00008 * 9.54049 * 17 2 1 20 20 C 1.36303 * 119.75470 * 318.15123 * 19 17 2 21 21 C 1.40400 * 119.90112 * 179.97438 * 20 19 17 22 22 C 1.36108 * 119.41982 * 359.73542 * 21 20 19 23 23 C 1.41240 * 119.50882 * 0.55681 * 22 21 20 24 24 O 1.21961 * 119.95842 * 179.69771 * 23 22 21 25 25 N 1.34667 * 120.08514 * 359.41484 * 23 22 21 26 26 C 1.46505 * 119.70491 * 180.27519 * 25 23 22 27 27 H 1.09007 * 109.46785 * 266.16603 * 1 2 3 28 28 H 1.08994 * 109.47052 * 26.16139 * 1 2 3 29 29 H 1.08994 * 109.46869 * 146.17121 * 1 2 3 30 30 H 1.09000 * 109.47408 * 23.92659 * 3 2 1 31 31 H 1.08998 * 109.47666 * 143.93310 * 3 2 1 32 32 H 1.08993 * 113.74194 * 252.25488 * 6 4 3 33 33 H 1.08998 * 113.74028 * 23.45133 * 6 4 3 34 34 H 1.08997 * 113.76496 * 90.69447 * 7 6 4 35 35 H 1.08998 * 113.76894 * 221.98103 * 7 6 4 36 36 H 0.96994 * 119.99809 * 180.02562 * 12 11 9 37 37 H 1.08001 * 120.04595 * 359.97438 * 20 19 17 38 38 H 1.08002 * 120.28946 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.24989 * 180.24949 * 22 21 20 40 40 H 1.09003 * 109.47013 * 359.88227 * 26 25 23 41 41 H 1.08997 * 109.47197 * 119.88105 * 26 25 23 42 42 H 1.08995 * 109.47308 * 239.88268 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5845 1.6341 -1.4345 5 1 3.3959 1.0202 -1.8255 6 6 1.3832 1.7563 -2.3894 7 6 2.0849 3.0058 -2.9517 8 7 2.7777 3.0815 -1.6481 9 6 3.3626 4.0884 -0.9276 10 1 3.8794 3.8632 -0.0063 11 6 3.2915 5.3984 -1.3812 12 7 2.5683 5.6891 -2.4418 13 14 4.2219 6.7485 -0.4863 14 1 5.0494 6.1489 0.5913 15 1 5.1013 7.4633 -1.4460 16 1 3.2549 7.7065 0.1070 17 6 2.1389 -1.1671 0.0005 18 8 3.3417 -1.1743 0.1750 19 6 1.4149 -2.4392 -0.2112 20 6 0.2123 -2.6424 0.3973 21 6 -0.4780 -3.8486 0.1980 22 6 0.0622 -4.8027 -0.6085 23 6 1.3128 -4.5686 -1.2218 24 8 1.8070 -5.4201 -1.9416 25 7 1.9575 -3.4041 -1.0172 26 6 3.2515 -3.1677 -1.6624 27 1 -0.3633 -0.0687 1.0255 28 1 -0.3633 0.9223 -0.4531 29 1 -0.3633 -0.8537 -0.5721 30 1 1.5657 2.0531 0.4168 31 1 3.0986 1.1682 0.6050 32 1 1.3058 0.9373 -3.1043 33 1 0.4412 1.9699 -1.8844 34 1 2.7503 2.7964 -3.7893 35 1 1.4100 3.8400 -3.1430 36 1 2.5188 6.6044 -2.7590 37 1 -0.2090 -1.8766 1.0318 38 1 -1.4312 -4.0164 0.6774 39 1 -0.4592 -5.7339 -0.7744 40 1 3.5247 -4.0384 -2.2585 41 1 3.1809 -2.2927 -2.3084 42 1 4.0115 -2.9963 -0.9002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085810480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:05 Heat of formation + Delta-G solvation = 23.560381 kcal Electronic energy + Delta-G solvation = -25519.225049 eV Core-core repulsion = 21888.012781 eV Total energy + Delta-G solvation = -3631.212268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.70330 -40.95137 -39.54640 -37.90122 -36.88472 -35.41127 -34.23013 -31.97501 -29.86329 -29.55580 -28.77707 -27.78503 -25.66257 -25.30496 -24.04781 -23.54969 -21.29303 -20.73402 -18.91918 -18.57095 -18.37173 -18.20844 -17.45787 -17.14150 -16.83539 -16.50799 -16.30932 -15.88963 -15.65662 -15.37383 -14.95645 -14.41617 -14.27364 -14.15872 -13.90289 -13.69516 -13.53578 -13.47457 -13.34514 -12.92998 -12.86048 -12.69588 -12.52385 -12.26475 -12.14348 -11.81221 -11.59226 -11.50430 -11.33206 -11.11166 -10.91551 -10.86051 -9.76250 -9.12329 -8.89460 -7.88294 -5.23163 -0.52946 0.64891 1.08948 1.45544 1.47507 1.56736 1.69607 1.88690 2.47875 2.56244 3.03833 3.30243 3.45428 3.56755 3.85992 3.92584 4.09511 4.13825 4.18915 4.24524 4.26206 4.32401 4.40998 4.49763 4.64007 4.66938 4.78735 4.85496 4.88508 4.92833 5.00558 5.03730 5.05571 5.19548 5.23241 5.36718 5.44906 5.57610 5.70350 5.89318 5.96519 6.21279 6.79534 6.87244 6.93071 7.62498 8.57465 9.26767 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028265 B = 0.003330 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.383454 B = 8407.521246 C = 8516.986137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.581 5.581 3 C 0.134 3.866 4 C 0.128 3.872 5 H 0.029 0.971 6 C -0.121 4.121 7 C 0.141 3.859 8 N -0.625 5.625 9 C -0.230 4.230 10 H 0.080 0.920 11 C -0.062 4.062 12 N -0.948 5.948 13 Si 0.971 3.029 14 H -0.269 1.269 15 H -0.298 1.298 16 H -0.287 1.287 17 C 0.550 3.450 18 O -0.562 6.562 19 C 0.098 3.902 20 C -0.163 4.163 21 C 0.002 3.998 22 C -0.232 4.232 23 C 0.497 3.503 24 O -0.602 6.602 25 N -0.483 5.483 26 C 0.056 3.944 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.008 0.992 35 H 0.055 0.945 36 H 0.248 0.752 37 H 0.193 0.807 38 H 0.196 0.804 39 H 0.169 0.831 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -17.182 7.583 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.312 5.312 3 C 0.010 3.990 4 C 0.021 3.979 5 H 0.046 0.954 6 C -0.159 4.159 7 C 0.016 3.984 8 N -0.352 5.352 9 C -0.358 4.358 10 H 0.098 0.902 11 C -0.256 4.256 12 N -0.597 5.597 13 Si 0.800 3.200 14 H -0.193 1.193 15 H -0.225 1.225 16 H -0.214 1.214 17 C 0.337 3.663 18 O -0.441 6.441 19 C -0.012 4.012 20 C -0.187 4.187 21 C -0.019 4.019 22 C -0.254 4.254 23 C 0.301 3.699 24 O -0.489 6.489 25 N -0.195 5.195 26 C -0.086 4.086 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.210 0.790 38 H 0.213 0.787 39 H 0.186 0.814 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.703 -17.346 7.279 22.155 hybrid contribution 1.452 1.141 -0.211 1.859 sum -10.251 -16.205 7.068 20.436 Atomic orbital electron populations 1.22782 0.76140 1.05632 1.04550 1.47623 1.09044 1.04042 1.70496 1.21484 0.97033 0.83822 0.96655 1.22616 0.95108 0.85189 0.94949 0.95373 1.23505 0.97432 0.97033 0.97962 1.22333 0.92935 0.95771 0.87389 1.46375 1.67637 1.02430 1.18775 1.19362 1.26852 0.86204 1.03369 0.90239 1.25522 1.01673 0.99056 0.99299 1.70006 1.44142 1.18252 1.27271 0.85120 0.77961 0.79312 0.77577 1.19310 1.22506 1.21370 1.18242 0.86415 0.83855 0.77776 1.90820 1.15838 1.87075 1.50329 1.20152 0.95437 0.89561 0.96018 1.21833 0.92237 1.01594 1.03052 1.21918 0.99862 0.89244 0.90925 1.22536 0.94916 1.04409 1.03535 1.18023 0.87962 0.80314 0.83609 1.90900 1.70396 1.44431 1.43132 1.45378 1.20356 1.14741 1.39007 1.22197 0.83529 1.03507 0.99376 0.88297 0.89722 0.88232 0.88564 0.92295 0.90940 0.88511 0.97446 0.92687 0.94336 0.79002 0.78706 0.81389 0.88669 0.90641 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 8.49 127.77 1.08 1.69 16 2 N -0.58 -13.26 2.67 -850.15 -2.27 -15.53 16 3 C 0.13 4.23 5.38 86.38 0.46 4.70 16 4 C 0.13 4.94 4.58 45.09 0.21 5.14 16 5 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 6 C -0.12 -4.07 7.22 31.25 0.23 -3.85 16 7 C 0.14 6.50 7.72 86.43 0.67 7.17 16 8 N -0.63 -30.83 3.58 -690.80 -2.47 -33.30 16 9 C -0.23 -12.49 10.50 84.03 0.88 -11.61 16 10 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 11 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 12 N -0.95 -55.81 11.32 21.65 0.25 -55.57 16 13 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 C 0.55 14.25 6.78 86.80 0.59 14.84 16 18 O -0.56 -19.32 14.41 -3.85 -0.06 -19.37 16 19 C 0.10 2.01 6.04 40.45 0.24 2.25 16 20 C -0.16 -1.78 7.44 22.35 0.17 -1.61 16 21 C 0.00 0.01 10.08 22.30 0.22 0.24 16 22 C -0.23 -3.65 10.00 22.51 0.23 -3.43 16 23 C 0.50 12.85 7.43 85.00 0.63 13.49 16 24 O -0.60 -20.49 16.39 -5.19 -0.09 -20.57 16 25 N -0.48 -12.10 3.02 -660.59 -1.99 -14.09 16 26 C 0.06 1.48 9.27 127.77 1.18 2.67 16 27 H 0.10 0.58 7.17 -2.38 -0.02 0.56 16 28 H 0.08 1.13 6.36 -2.39 -0.02 1.12 16 29 H 0.10 0.86 5.53 -2.39 -0.01 0.84 16 30 H 0.10 3.01 8.03 -2.39 -0.02 2.99 16 31 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.10 2.84 6.45 -2.39 -0.02 2.83 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.05 2.83 6.89 -2.39 -0.02 2.81 16 36 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.19 0.80 5.37 -2.91 -0.02 0.78 16 38 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 39 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.09 2.58 6.86 -2.39 -0.02 2.56 16 41 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 42 H 0.09 2.43 6.78 -2.39 -0.02 2.42 16 Total: -1.00 -79.35 340.40 3.70 -75.65 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.04 Total: 7.03 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 7.26 Total: 28.69 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.49 Total: -118.49 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.14 Total: -39.94 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -79.35 3.70 -75.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085810480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.207 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds