Wall clock time and date at job start Fri Apr 10 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35674 * 116.99621 * 2 1 4 4 C 1.39292 * 119.61460 * 180.02562 * 3 2 1 5 5 C 1.38323 * 119.30312 * 180.02562 * 4 3 2 6 6 C 1.38776 * 118.56428 * 0.02562 * 5 4 3 7 7 C 1.39130 * 119.18759 * 359.97438 * 6 5 4 8 8 C 1.48147 * 119.69550 * 180.02562 * 7 6 5 9 9 O 1.21526 * 119.99809 * 354.79321 * 8 7 6 10 10 N 1.34770 * 120.00419 * 174.78776 * 8 7 6 11 11 C 1.46502 * 119.99880 * 5.08841 * 10 8 7 12 12 C 1.46498 * 120.00088 * 185.09079 * 10 8 7 13 13 C 1.53006 * 109.47252 * 84.24470 * 12 10 8 14 14 H 1.08993 * 112.96538 * 310.95535 * 13 12 10 15 15 C 1.53945 * 113.76945 * 179.27753 * 13 12 10 16 16 C 1.53937 * 86.29158 * 222.09038 * 15 13 12 17 17 N 1.47577 * 113.76936 * 82.63687 * 13 12 10 18 18 C 1.36942 * 134.49298 * 318.93526 * 17 13 12 19 19 H 1.08002 * 119.99875 * 2.95863 * 18 17 13 20 20 C 1.38813 * 120.00096 * 182.96424 * 18 17 13 21 21 N 1.31614 * 119.99777 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46963 * 60.00241 * 22 20 18 24 24 H 1.48500 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47231 * 299.99812 * 22 20 18 26 26 N 1.31897 * 119.61718 * 359.73699 * 3 2 1 27 27 H 1.08998 * 109.47647 * 59.99075 * 1 2 3 28 28 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46820 * 299.99407 * 1 2 3 30 30 H 1.07996 * 120.34361 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.71532 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.40906 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47022 * 56.96750 * 11 10 8 34 34 H 1.09000 * 109.46947 * 176.96593 * 11 10 8 35 35 H 1.08999 * 109.47039 * 296.96372 * 11 10 8 36 36 H 1.08999 * 109.47208 * 204.24086 * 12 10 8 37 37 H 1.08996 * 109.47366 * 324.24610 * 12 10 8 38 38 H 1.09002 * 113.74114 * 336.44146 * 15 13 12 39 39 H 1.09001 * 113.74153 * 107.63968 * 15 13 12 40 40 H 1.09001 * 113.76892 * 137.90457 * 16 15 13 41 41 H 1.08996 * 113.77213 * 269.19600 * 16 15 13 42 42 H 0.97008 * 120.00437 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4364 1.2725 -0.0005 5 6 4.0576 2.5084 0.0000 6 6 3.2665 3.6487 0.0016 7 6 1.8818 3.5138 0.0021 8 6 1.0266 4.7235 0.0032 9 8 1.5317 5.8246 0.0993 10 7 -0.3116 4.6029 -0.1023 11 6 -0.9293 3.2745 -0.1059 12 6 -1.1484 5.8002 -0.2135 13 6 -1.2043 6.2495 -1.6751 14 1 -0.2201 6.3089 -2.1396 15 6 -2.0766 7.4964 -1.9080 16 6 -2.6017 6.7721 -3.1607 17 7 -2.2008 5.5208 -2.4837 18 6 -2.5950 4.2122 -2.5702 19 1 -2.1636 3.4736 -1.9108 20 6 -3.5488 3.8350 -3.5055 21 7 -4.0747 4.7352 -4.3089 22 14 -4.0859 2.0499 -3.6240 23 1 -4.6665 1.6205 -2.3264 24 1 -5.1071 1.9101 -4.6930 25 1 -2.9116 1.1999 -3.9464 26 7 1.3191 2.3102 -0.0053 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0240 0.3664 -0.0005 31 1 5.1350 2.5844 0.0000 32 1 3.7202 4.6287 0.0017 33 1 -0.6470 2.7401 0.8012 34 1 -2.0137 3.3782 -0.1440 35 1 -0.5868 2.7169 -0.9776 36 1 -2.1557 5.5731 0.1355 37 1 -0.7240 6.5980 0.3958 38 1 -2.8348 7.6512 -1.1403 39 1 -1.5042 8.3976 -2.1277 40 1 -3.6776 6.8692 -3.3057 41 1 -2.0299 6.9856 -4.0637 42 1 -4.7415 4.4718 -4.9623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085903476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:11 Heat of formation + Delta-G solvation = 48.455472 kcal Electronic energy + Delta-G solvation = -25920.487369 eV Core-core repulsion = 22290.354633 eV Total energy + Delta-G solvation = -3630.132736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96433 -39.39633 -37.99775 -37.40374 -35.10293 -32.72853 -32.18216 -30.93759 -28.55153 -27.80375 -27.54297 -26.05839 -24.36095 -23.28300 -23.01203 -22.23275 -19.94574 -19.03613 -18.01247 -17.41077 -16.77855 -16.17960 -16.16432 -15.87849 -15.75306 -15.06855 -14.86309 -14.22577 -14.11035 -13.78706 -13.65094 -13.38725 -13.07218 -12.84444 -12.48302 -12.32883 -12.04057 -11.78542 -11.40290 -11.36080 -11.21310 -11.07553 -10.94356 -10.69942 -10.52151 -10.20629 -10.09670 -9.99012 -9.66381 -9.29417 -9.19420 -8.75947 -8.69041 -8.11248 -6.81575 -5.72878 -3.03214 0.62072 1.15283 2.87569 2.96173 3.25863 3.35860 3.39355 3.42941 3.85018 4.04109 4.45559 4.66892 4.84843 4.88894 5.10098 5.18133 5.23296 5.30237 5.33512 5.46152 5.62659 5.66750 5.76690 5.81059 5.89458 5.95387 6.00446 6.10569 6.13193 6.19962 6.28097 6.46190 6.50665 6.66289 6.75593 6.98544 7.09046 7.31317 7.47703 7.57067 7.62704 7.74643 8.02781 8.39071 9.08278 9.75781 10.68341 11.45023 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.005712 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.283919 B = 4901.113607 C = 6572.123665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.315 3.685 4 C -0.173 4.173 5 C -0.049 4.049 6 C -0.151 4.151 7 C 0.128 3.872 8 C 0.562 3.438 9 O -0.540 6.540 10 N -0.578 5.578 11 C 0.098 3.902 12 C 0.116 3.884 13 C 0.128 3.872 14 H 0.045 0.955 15 C -0.159 4.159 16 C 0.162 3.838 17 N -0.602 5.602 18 C -0.224 4.224 19 H 0.089 0.911 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.286 1.286 26 N -0.505 5.505 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.852 -5.382 10.652 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.134 3.866 4 C -0.194 4.194 5 C -0.075 4.075 6 C -0.173 4.173 7 C -0.009 4.009 8 C 0.348 3.652 9 O -0.418 6.418 10 N -0.307 5.307 11 C -0.044 4.044 12 C -0.007 4.007 13 C 0.020 3.980 14 H 0.062 0.938 15 C -0.198 4.198 16 C 0.037 3.963 17 N -0.329 5.329 18 C -0.352 4.352 19 H 0.107 0.893 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.213 1.213 26 N -0.232 5.232 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.040 -5.397 10.553 16.198 hybrid contribution 0.339 -1.097 -0.469 1.241 sum 11.379 -6.494 10.084 16.533 Atomic orbital electron populations 1.23054 0.76738 1.03300 1.03084 1.86229 1.23269 1.24119 1.87832 1.19946 0.89436 0.84846 0.92396 1.21252 0.92051 0.99740 1.06339 1.21403 1.00732 0.90866 0.94483 1.21959 0.93047 1.00752 1.01515 1.20922 0.92223 0.90456 0.97302 1.17848 0.82260 0.87182 0.77884 1.90751 1.73621 1.26068 1.51394 1.47662 1.05339 1.08841 1.68817 1.22190 0.98201 0.82338 1.01714 1.22058 0.94175 0.86157 0.98328 1.22595 0.93666 0.90868 0.90848 0.93754 1.23767 0.99198 0.95766 1.01034 1.22155 0.99661 0.83177 0.91339 1.46208 1.39151 1.03814 1.43677 1.19319 1.17491 0.83393 1.15008 0.89342 1.24783 1.00221 0.97311 0.98313 1.69814 1.31402 1.31861 1.23720 0.86372 0.78131 0.84989 0.77378 1.21069 1.21611 1.21323 1.67858 1.39657 0.98227 1.17425 0.91523 0.88497 0.92024 0.83877 0.83513 0.83280 0.92356 0.90337 0.91266 0.89594 0.90500 0.90708 0.92916 0.91268 0.95753 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.91 10.48 -18.72 -0.20 -4.11 16 3 C 0.31 4.20 7.49 -17.13 -0.13 4.08 16 4 C -0.17 -1.85 10.05 -39.16 -0.39 -2.24 16 5 C -0.05 -0.49 10.16 -39.35 -0.40 -0.89 16 6 C -0.15 -1.94 9.63 -39.05 -0.38 -2.32 16 7 C 0.13 2.01 6.68 -83.02 -0.55 1.46 16 8 C 0.56 10.20 7.61 -12.19 -0.09 10.11 16 9 O -0.54 -10.71 15.97 5.34 0.09 -10.62 16 10 N -0.58 -10.49 2.89 -182.58 -0.53 -11.02 16 11 C 0.10 1.65 7.21 59.85 0.43 2.08 16 12 C 0.12 2.14 5.26 -4.04 -0.02 2.12 16 13 C 0.13 2.71 4.49 -66.86 -0.30 2.41 16 14 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 15 C -0.16 -3.07 7.86 -25.80 -0.20 -3.27 16 16 C 0.16 3.87 7.45 -2.85 -0.02 3.85 16 17 N -0.60 -15.12 3.58 -169.75 -0.61 -15.73 16 18 C -0.22 -5.99 10.29 -15.06 -0.15 -6.15 16 19 H 0.09 2.19 3.77 -52.49 -0.20 1.99 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.18 11.47 55.49 0.64 -26.55 16 22 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 N -0.50 -7.59 4.82 -9.87 -0.05 -7.64 16 27 H 0.07 0.85 7.41 -51.93 -0.38 0.47 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.66 7.53 -51.93 -0.39 0.27 16 30 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 32 H 0.15 1.81 7.64 -52.49 -0.40 1.41 16 33 H 0.06 0.86 6.46 -51.93 -0.34 0.53 16 34 H 0.08 1.38 6.42 -51.93 -0.33 1.05 16 35 H 0.07 1.26 5.88 -51.93 -0.31 0.96 16 36 H 0.09 1.57 7.78 -51.93 -0.40 1.17 16 37 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 38 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.79 7.31 -51.93 -0.38 1.41 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -32.51 342.97 -7.39 -39.90 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.62 Total: 1.77 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -1.26 Total: 12.27 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.55 Total: -60.93 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.11 Total: -14.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.51 -7.39 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085903476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.352 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds