Wall clock time and date at job start Fri Apr 10 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35674 * 116.99621 * 2 1 4 4 C 1.39292 * 119.61460 * 180.02562 * 3 2 1 5 5 C 1.38323 * 119.30312 * 180.02562 * 4 3 2 6 6 C 1.38776 * 118.56428 * 0.02562 * 5 4 3 7 7 C 1.39130 * 119.18759 * 359.97438 * 6 5 4 8 8 C 1.48147 * 119.69550 * 180.02562 * 7 6 5 9 9 O 1.21526 * 119.99809 * 354.79321 * 8 7 6 10 10 N 1.34770 * 120.00419 * 174.78776 * 8 7 6 11 11 C 1.46502 * 119.99880 * 5.08841 * 10 8 7 12 12 C 1.46498 * 120.00088 * 185.09079 * 10 8 7 13 13 C 1.53006 * 109.47252 * 84.24470 * 12 10 8 14 14 H 1.08993 * 112.96538 * 310.95535 * 13 12 10 15 15 C 1.53945 * 113.76945 * 179.27753 * 13 12 10 16 16 C 1.53937 * 86.29158 * 222.09038 * 15 13 12 17 17 N 1.47577 * 113.76936 * 82.63687 * 13 12 10 18 18 C 1.36942 * 134.49298 * 318.93526 * 17 13 12 19 19 H 1.08002 * 119.99875 * 2.95863 * 18 17 13 20 20 C 1.38813 * 120.00096 * 182.96424 * 18 17 13 21 21 N 1.31614 * 119.99777 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46963 * 60.00241 * 22 20 18 24 24 H 1.48500 * 109.47152 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47231 * 299.99812 * 22 20 18 26 26 N 1.31897 * 119.61718 * 359.73699 * 3 2 1 27 27 H 1.08998 * 109.47647 * 59.99075 * 1 2 3 28 28 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46820 * 299.99407 * 1 2 3 30 30 H 1.07996 * 120.34361 * 359.97438 * 4 3 2 31 31 H 1.08007 * 120.71532 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.40906 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.47022 * 56.96750 * 11 10 8 34 34 H 1.09000 * 109.46947 * 176.96593 * 11 10 8 35 35 H 1.08999 * 109.47039 * 296.96372 * 11 10 8 36 36 H 1.08999 * 109.47208 * 204.24086 * 12 10 8 37 37 H 1.08996 * 109.47366 * 324.24610 * 12 10 8 38 38 H 1.09002 * 113.74114 * 336.44146 * 15 13 12 39 39 H 1.09001 * 113.74153 * 107.63968 * 15 13 12 40 40 H 1.09001 * 113.76892 * 137.90457 * 16 15 13 41 41 H 1.08996 * 113.77213 * 269.19600 * 16 15 13 42 42 H 0.97008 * 120.00437 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4364 1.2725 -0.0005 5 6 4.0576 2.5084 0.0000 6 6 3.2665 3.6487 0.0016 7 6 1.8818 3.5138 0.0021 8 6 1.0266 4.7235 0.0032 9 8 1.5317 5.8246 0.0993 10 7 -0.3116 4.6029 -0.1023 11 6 -0.9293 3.2745 -0.1059 12 6 -1.1484 5.8002 -0.2135 13 6 -1.2043 6.2495 -1.6751 14 1 -0.2201 6.3089 -2.1396 15 6 -2.0766 7.4964 -1.9080 16 6 -2.6017 6.7721 -3.1607 17 7 -2.2008 5.5208 -2.4837 18 6 -2.5950 4.2122 -2.5702 19 1 -2.1636 3.4736 -1.9108 20 6 -3.5488 3.8350 -3.5055 21 7 -4.0747 4.7352 -4.3089 22 14 -4.0859 2.0499 -3.6240 23 1 -4.6665 1.6205 -2.3264 24 1 -5.1071 1.9101 -4.6930 25 1 -2.9116 1.1999 -3.9464 26 7 1.3191 2.3102 -0.0053 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0240 0.3664 -0.0005 31 1 5.1350 2.5844 0.0000 32 1 3.7202 4.6287 0.0017 33 1 -0.6470 2.7401 0.8012 34 1 -2.0137 3.3782 -0.1440 35 1 -0.5868 2.7169 -0.9776 36 1 -2.1557 5.5731 0.1355 37 1 -0.7240 6.5980 0.3958 38 1 -2.8348 7.6512 -1.1403 39 1 -1.5042 8.3976 -2.1277 40 1 -3.6776 6.8692 -3.3057 41 1 -2.0299 6.9856 -4.0637 42 1 -4.7415 4.4718 -4.9623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085903476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:10 Heat of formation + Delta-G solvation = 26.961960 kcal Electronic energy + Delta-G solvation = -25921.419398 eV Core-core repulsion = 22290.354633 eV Total energy + Delta-G solvation = -3631.064765 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02917 -40.71269 -39.51669 -38.58674 -36.54577 -34.27867 -33.65777 -31.95582 -30.22589 -29.55095 -28.62122 -27.34252 -25.62446 -25.24323 -24.01379 -23.64877 -21.24724 -20.82892 -19.05774 -18.83853 -18.46411 -17.29281 -17.20994 -17.05251 -16.97890 -16.71496 -16.44381 -15.83543 -15.43784 -15.15924 -14.83165 -14.70826 -14.45232 -14.26918 -13.87545 -13.55019 -13.24040 -13.09164 -13.08313 -12.91423 -12.69871 -12.66998 -12.48226 -12.30406 -12.18340 -11.79725 -11.51308 -11.47914 -11.19965 -10.95675 -10.79984 -10.39944 -9.81360 -9.46571 -8.85364 -7.83682 -5.15216 -0.40357 0.24575 1.43291 1.46930 1.52230 1.64156 1.93570 2.08748 2.49338 2.77738 2.92786 3.33257 3.43887 3.66437 3.93998 3.96327 4.03031 4.21403 4.25493 4.29781 4.39348 4.41193 4.43085 4.46480 4.58253 4.67925 4.74852 4.78936 4.88785 4.93405 5.00148 5.03251 5.07368 5.10577 5.34314 5.35717 5.48981 5.62639 5.71778 5.97935 6.10983 6.32299 6.58360 6.97791 7.02824 7.68931 8.65424 9.34533 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.005712 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.283919 B = 4901.113607 C = 6572.123665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.311 6.311 3 C 0.294 3.706 4 C -0.158 4.158 5 C -0.035 4.035 6 C -0.150 4.150 7 C 0.093 3.907 8 C 0.558 3.442 9 O -0.565 6.565 10 N -0.587 5.587 11 C 0.112 3.888 12 C 0.124 3.876 13 C 0.129 3.871 14 H 0.026 0.974 15 C -0.130 4.130 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.223 4.223 19 H 0.104 0.896 20 C -0.075 4.075 21 N -0.958 5.958 22 Si 0.962 3.038 23 H -0.266 1.266 24 H -0.301 1.301 25 H -0.281 1.281 26 N -0.522 5.522 27 H 0.046 0.954 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.176 0.824 31 H 0.193 0.807 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.007 0.993 42 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.947 -6.846 12.365 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.218 6.218 3 C 0.113 3.887 4 C -0.179 4.179 5 C -0.059 4.059 6 C -0.172 4.172 7 C -0.043 4.043 8 C 0.346 3.654 9 O -0.445 6.445 10 N -0.316 5.316 11 C -0.030 4.030 12 C 0.001 3.999 13 C 0.022 3.978 14 H 0.043 0.957 15 C -0.168 4.168 16 C 0.028 3.972 17 N -0.350 5.350 18 C -0.351 4.351 19 H 0.122 0.878 20 C -0.267 4.267 21 N -0.608 5.608 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.228 1.228 25 H -0.207 1.207 26 N -0.250 5.250 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.193 0.807 31 H 0.210 0.790 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.158 -6.862 12.304 19.277 hybrid contribution -0.174 -0.665 -0.988 1.204 sum 12.984 -7.526 11.316 18.796 Atomic orbital electron populations 1.23147 0.76274 1.04794 1.02113 1.86232 1.23800 1.23852 1.87936 1.20362 0.90665 0.84522 0.93189 1.21724 0.91079 1.01387 1.03690 1.21887 1.02605 0.89250 0.92195 1.22166 0.92141 1.02205 1.00654 1.20686 0.92965 0.89816 1.00794 1.18306 0.82268 0.87966 0.76877 1.90713 1.74006 1.27231 1.52514 1.47768 1.05722 1.08972 1.69115 1.22048 0.97150 0.81860 1.01959 1.21882 0.94683 0.87009 0.96344 1.22655 0.92152 0.91202 0.91766 0.95683 1.23562 0.98876 0.95843 0.98530 1.22109 0.97969 0.84330 0.92785 1.46594 1.40271 1.03766 1.44397 1.19854 1.16412 0.84611 1.14260 0.87842 1.25600 1.01161 1.01183 0.98723 1.70024 1.32397 1.33639 1.24778 0.85376 0.77442 0.80500 0.77579 1.19164 1.22781 1.20713 1.67642 1.40683 0.98489 1.18143 0.93563 0.85822 0.91885 0.80651 0.78987 0.82966 0.90433 0.91410 0.92854 0.89332 0.89068 0.88887 0.90009 0.93865 0.97485 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.38 113.37 1.18 1.84 16 2 O -0.31 -7.32 10.48 -89.91 -0.94 -8.26 16 3 C 0.29 7.27 7.49 84.94 0.64 7.91 16 4 C -0.16 -2.80 10.05 22.54 0.23 -2.58 16 5 C -0.03 -0.55 10.16 22.42 0.23 -0.32 16 6 C -0.15 -3.55 9.63 22.61 0.22 -3.33 16 7 C 0.09 2.84 6.68 41.84 0.28 3.12 16 8 C 0.56 20.16 7.61 86.88 0.66 20.82 16 9 O -0.56 -22.28 15.97 -3.80 -0.06 -22.34 16 10 N -0.59 -21.20 2.89 -849.85 -2.45 -23.66 16 11 C 0.11 3.76 7.21 127.77 0.92 4.68 16 12 C 0.12 4.50 5.26 86.38 0.45 4.95 16 13 C 0.13 5.45 4.49 45.10 0.20 5.65 16 14 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 15 C -0.13 -4.88 7.86 31.25 0.25 -4.64 16 16 C 0.15 7.53 7.45 86.43 0.64 8.17 16 17 N -0.62 -31.84 3.58 -690.97 -2.48 -34.32 16 18 C -0.22 -12.07 10.29 84.03 0.86 -11.21 16 19 H 0.10 5.15 3.77 -2.91 -0.01 5.13 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.96 -58.54 11.47 21.65 0.25 -58.29 16 22 Si 0.96 45.01 29.55 68.60 2.03 47.04 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 N -0.52 -15.22 4.82 -298.19 -1.44 -16.65 16 27 H 0.05 1.16 7.41 -2.39 -0.02 1.14 16 28 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.15 3.44 7.64 -2.91 -0.02 3.42 16 33 H 0.08 2.27 6.46 -2.39 -0.02 2.25 16 34 H 0.07 2.38 6.42 -2.39 -0.02 2.36 16 35 H 0.05 1.96 5.88 -2.39 -0.01 1.95 16 36 H 0.09 3.16 7.78 -2.39 -0.02 3.14 16 37 H 0.09 3.06 7.53 -2.39 -0.02 3.04 16 38 H 0.09 3.19 8.10 -2.39 -0.02 3.17 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.04 2.32 7.31 -2.39 -0.02 2.31 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 42 H 0.24 14.62 8.31 -92.70 -0.77 13.85 16 Total: -1.00 -72.78 342.97 3.17 -69.61 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.04 Total: 15.56 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: 7.22 Total: 31.31 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -6.12 Total: -132.92 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.00 Total: -30.60 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.78 3.17 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085903476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.569 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds