Wall clock time and date at job start Fri Apr 10 2020 17:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35661 * 117.00055 * 2 1 4 4 C 1.39295 * 119.61740 * 179.97438 * 3 2 1 5 5 C 1.38329 * 119.30246 * 180.02562 * 4 3 2 6 6 C 1.38775 * 118.56546 * 0.02562 * 5 4 3 7 7 C 1.39136 * 119.18444 * 359.97438 * 6 5 4 8 8 C 1.48153 * 119.68569 * 179.97438 * 7 6 5 9 9 O 1.21511 * 120.00134 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99665 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99736 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46890 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.84998 * 316.19273 * 12 11 10 14 14 C 1.53777 * 113.61504 * 87.50450 * 12 11 10 15 15 C 1.53784 * 87.08480 * 139.97950 * 14 12 11 16 16 H 1.08996 * 113.68629 * 89.12201 * 15 14 12 17 17 N 1.46492 * 113.61527 * 220.01446 * 15 14 12 18 18 C 1.36935 * 120.00376 * 252.49597 * 17 15 14 19 19 H 1.08003 * 119.99724 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00063 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99887 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.53786 * 113.61147 * 184.99924 * 12 11 10 27 27 N 1.31899 * 119.61836 * 0.29186 * 3 2 1 28 28 H 1.09004 * 109.46896 * 300.00103 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00236 * 1 2 3 30 30 H 1.08994 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.34417 * 0.04510 * 4 3 2 32 32 H 1.08003 * 120.71377 * 180.02562 * 5 4 3 33 33 H 1.07996 * 120.41210 * 180.02562 * 6 5 4 34 34 H 0.96996 * 120.00014 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47276 * 59.99714 * 11 10 8 36 36 H 1.09001 * 109.47121 * 300.00097 * 11 10 8 37 37 H 1.09000 * 113.61890 * 25.42668 * 14 12 11 38 38 H 1.09003 * 113.61486 * 254.53003 * 14 12 11 39 39 H 0.97009 * 119.99477 * 72.50182 * 17 15 14 40 40 H 0.97006 * 119.99732 * 180.02562 * 21 20 18 41 41 H 1.08996 * 113.61135 * 105.47547 * 26 12 11 42 42 H 1.08997 * 113.69315 * 334.57381 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 0.0005 5 6 4.0577 2.5083 0.0011 6 6 3.2667 3.6485 0.0016 7 6 1.8819 3.5136 0.0010 8 6 1.0268 4.7235 0.0022 9 8 1.5355 5.8270 0.0031 10 7 -0.3154 4.6001 0.0021 11 6 -1.1609 5.7964 0.0027 12 6 -2.6332 5.3803 0.0032 13 1 -2.8436 4.5678 -0.6922 14 6 -3.2088 5.1534 1.4110 15 6 -4.4907 5.8412 0.9123 16 1 -5.2106 5.1550 0.4664 17 7 -5.0963 6.7396 1.8983 18 6 -6.2563 6.3800 2.5308 19 1 -6.7246 5.4338 2.3030 20 6 -6.8304 7.2316 3.4647 21 7 -7.9452 6.8857 4.0729 22 14 -6.0201 8.8677 3.8592 23 1 -6.5485 9.9144 2.9479 24 1 -4.5510 8.7491 3.6776 25 1 -6.3164 9.2405 5.2658 26 6 -3.6078 6.5636 -0.1190 27 7 1.3192 2.3101 0.0058 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0240 0.3662 0.0002 32 1 5.1350 2.5842 0.0011 33 1 3.7203 4.6286 0.0016 34 1 -0.7214 3.7192 0.0017 35 1 -0.9510 6.3901 -0.8870 36 1 -0.9509 6.3893 0.8929 37 1 -2.6891 5.7108 2.1903 38 1 -3.3469 4.1017 1.6621 39 1 -4.6754 7.5893 2.1031 40 1 -8.3466 7.4810 4.7253 41 1 -4.0681 6.6503 -1.1032 42 1 -3.1984 7.5073 0.2414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086243523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:30 Heat of formation + Delta-G solvation = -26.072343 kcal Electronic energy + Delta-G solvation = -23935.411487 eV Core-core repulsion = 20302.046982 eV Total energy + Delta-G solvation = -3633.364505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.93258 -40.72879 -39.87545 -38.64105 -36.20740 -35.12537 -33.68396 -32.73493 -31.92598 -29.13926 -28.20788 -26.48881 -25.99546 -25.00689 -23.91723 -22.48110 -21.96967 -20.87643 -19.63528 -19.31531 -18.74402 -17.38375 -17.13236 -17.03205 -16.84460 -16.65637 -16.48080 -16.03330 -15.85539 -15.16029 -15.04234 -14.81414 -14.62632 -14.26333 -14.10948 -13.97039 -13.26931 -13.23533 -13.20130 -13.07318 -12.72223 -12.69798 -12.18263 -12.15687 -11.94223 -11.80973 -11.66873 -11.48427 -11.14248 -11.03573 -10.89046 -10.70701 -10.18595 -9.62555 -9.27473 -8.03414 -5.35782 -0.44518 0.20985 1.37271 1.39837 1.46996 1.63056 1.96235 2.08950 2.47434 2.75615 2.94047 3.26959 3.57267 3.66810 3.74751 3.88421 3.92541 4.01780 4.06938 4.24624 4.26168 4.35580 4.44877 4.45078 4.46763 4.53102 4.71954 4.80605 4.91761 4.93656 4.95321 5.00881 5.10199 5.18646 5.28322 5.32440 5.38058 5.63029 5.77589 6.09179 6.22585 6.32053 6.62885 7.04510 7.07488 7.85701 8.03558 9.18190 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.002644 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.809768 B =10587.937589 C =11289.117230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.314 6.314 3 C 0.301 3.699 4 C -0.159 4.159 5 C -0.035 4.035 6 C -0.151 4.151 7 C 0.094 3.906 8 C 0.564 3.436 9 O -0.567 6.567 10 N -0.697 5.697 11 C 0.134 3.866 12 C -0.099 4.099 13 H 0.117 0.883 14 C -0.156 4.156 15 C 0.147 3.853 16 H 0.078 0.922 17 N -0.744 5.744 18 C -0.231 4.231 19 H 0.059 0.941 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.254 1.254 25 H -0.297 1.297 26 C -0.133 4.133 27 N -0.529 5.529 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.153 0.847 34 H 0.417 0.583 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.365 0.635 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.952 -13.162 -12.943 32.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.221 6.221 3 C 0.119 3.881 4 C -0.179 4.179 5 C -0.060 4.060 6 C -0.173 4.173 7 C -0.041 4.041 8 C 0.350 3.650 9 O -0.446 6.446 10 N -0.347 5.347 11 C 0.011 3.989 12 C -0.118 4.118 13 H 0.135 0.865 14 C -0.197 4.197 15 C 0.038 3.962 16 H 0.097 0.903 17 N -0.385 5.385 18 C -0.362 4.362 19 H 0.077 0.923 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.179 1.179 25 H -0.224 1.224 26 C -0.172 4.172 27 N -0.256 5.256 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.192 0.808 32 H 0.207 0.793 33 H 0.170 0.830 34 H 0.254 0.746 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.199 0.801 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 26.235 -12.801 -12.878 31.906 hybrid contribution 0.048 0.800 0.794 1.128 sum 26.283 -12.002 -12.084 31.319 Atomic orbital electron populations 1.23078 0.75917 1.04796 1.02343 1.86250 1.24177 1.23822 1.87822 1.20174 0.90526 0.84261 0.93122 1.21739 0.91250 1.01397 1.03547 1.21897 1.02676 0.89383 0.92050 1.22207 0.92482 1.02129 1.00465 1.20648 0.92842 0.89699 1.00955 1.18200 0.82768 0.87636 0.76420 1.90769 1.74603 1.27241 1.51977 1.45844 1.05212 1.11330 1.72348 1.21399 0.88713 0.86782 1.02001 1.22471 0.91542 0.99745 0.98023 0.86549 1.23758 0.98774 1.00901 0.96246 1.21917 0.92026 0.92612 0.89658 0.90349 1.42793 1.26954 1.20918 1.47826 1.19129 0.99050 1.02307 1.15742 0.92290 1.25512 0.98068 1.02566 0.99640 1.69886 1.22337 1.39240 1.32065 0.85425 0.79236 0.80340 0.76863 1.20317 1.17906 1.22422 1.23349 0.96254 0.97543 1.00095 1.67007 1.41749 0.98352 1.18530 0.92685 0.92162 0.86094 0.80774 0.79254 0.82952 0.74620 0.90693 0.92452 0.91716 0.91916 0.80144 0.93403 0.89739 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.38 113.37 1.18 1.61 16 2 O -0.31 -5.21 10.48 -89.77 -0.94 -6.15 16 3 C 0.30 5.27 7.49 84.94 0.64 5.90 16 4 C -0.16 -1.84 10.05 22.55 0.23 -1.62 16 5 C -0.04 -0.35 10.16 22.42 0.23 -0.12 16 6 C -0.15 -2.50 9.63 22.61 0.22 -2.29 16 7 C 0.09 2.03 6.75 41.84 0.28 2.32 16 8 C 0.56 14.53 7.81 86.88 0.68 15.21 16 9 O -0.57 -17.82 16.32 -3.75 -0.06 -17.88 16 10 N -0.70 -15.83 5.55 -465.68 -2.58 -18.41 16 11 C 0.13 3.15 5.51 86.38 0.48 3.63 16 12 C -0.10 -2.26 3.76 -10.27 -0.04 -2.30 16 13 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 14 C -0.16 -4.74 7.43 31.12 0.23 -4.51 16 15 C 0.15 5.24 4.48 45.52 0.20 5.44 16 16 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 17 N -0.74 -34.39 5.20 -320.45 -1.67 -36.06 16 18 C -0.23 -13.17 10.45 84.03 0.88 -12.29 16 19 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 21 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 22 Si 0.95 46.06 27.73 68.60 1.90 47.96 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 26 C -0.13 -3.58 7.39 31.12 0.23 -3.35 16 27 N -0.53 -10.72 8.39 -298.20 -2.50 -13.22 16 28 H 0.05 0.79 8.10 -2.38 -0.02 0.77 16 29 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 30 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.15 2.43 7.63 -2.91 -0.02 2.41 16 34 H 0.42 8.29 7.80 -92.71 -0.72 7.57 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.54 7.84 -2.39 -0.02 1.52 16 37 H 0.06 2.15 7.90 -2.39 -0.02 2.14 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.37 16.34 5.79 -92.70 -0.54 15.80 16 40 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -75.09 357.67 0.07 -75.02 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.27 Total: 27.89 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.89 Total: 4.14 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -6.45 Total: -130.98 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.00 Total: -24.04 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.90 Total: 47.96 kcal Total: -75.09 0.07 -75.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086243523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.948 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds