Wall clock time and date at job start Fri Apr 10 2020 17:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35655 * 116.99961 * 2 1 4 4 C 1.39337 * 120.54042 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.44149 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44100 * 359.97438 * 5 4 3 7 7 N 1.31373 * 121.07007 * 359.97438 * 6 5 4 8 8 C 1.32864 * 121.69465 * 359.77002 * 7 6 5 9 9 C 1.47831 * 119.78008 * 180.26625 * 8 7 6 10 10 O 1.21556 * 119.99712 * 180.22671 * 9 8 7 11 11 N 1.34774 * 120.00732 * 0.22422 * 9 8 7 12 12 C 1.46491 * 120.00329 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47132 * 180.02562 * 12 11 9 14 14 H 1.08999 * 112.84709 * 316.19367 * 13 12 11 15 15 C 1.53777 * 113.61527 * 87.50016 * 13 12 11 16 16 C 1.53779 * 87.08012 * 139.98278 * 15 13 12 17 17 H 1.08995 * 113.61719 * 89.11564 * 16 15 13 18 18 N 1.46509 * 113.61398 * 220.01993 * 16 15 13 19 19 C 1.36930 * 119.99901 * 252.49664 * 18 16 15 20 20 H 1.07997 * 120.00396 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00048 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46966 * 60.00276 * 23 21 19 25 25 H 1.48499 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46926 * 300.00249 * 23 21 19 27 27 C 1.53776 * 113.61338 * 185.00100 * 13 12 11 28 28 H 1.08996 * 109.47672 * 59.99694 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47220 * 299.99750 * 1 2 3 31 31 H 1.08001 * 120.77745 * 359.95196 * 4 3 2 32 32 H 1.07998 * 120.27966 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.46262 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99196 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.47253 * 299.99631 * 12 11 9 36 36 H 1.08999 * 109.47581 * 60.00252 * 12 11 9 37 37 H 1.08998 * 113.61826 * 254.53060 * 15 13 12 38 38 H 1.09003 * 113.61413 * 25.43291 * 15 13 12 39 39 H 0.97000 * 119.99609 * 72.49532 * 18 16 15 40 40 H 0.97005 * 119.99495 * 179.97438 * 22 21 19 41 41 H 1.08995 * 113.61896 * 334.56378 * 27 13 12 42 42 H 1.09003 * 113.61646 * 105.38400 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3572 3.6012 0.0016 7 7 4.0419 2.4800 0.0021 8 6 3.4409 1.2950 0.0067 9 6 4.2531 0.0599 0.0130 10 8 3.7074 -1.0263 0.0130 11 7 5.5986 0.1379 0.0187 12 6 6.4033 -1.0861 0.0244 13 6 7.8889 -0.7198 0.0308 14 1 8.1295 0.0843 -0.6646 15 6 8.4657 -0.5104 1.4409 16 6 9.7258 -1.2416 0.9486 17 1 10.4695 -0.5796 0.5051 18 7 10.2965 -2.1586 1.9384 19 6 11.4653 -1.8374 2.5754 20 1 11.9662 -0.9079 2.3486 21 6 12.0058 -2.7060 3.5136 22 7 11.3951 -3.8386 3.7905 23 14 13.5999 -2.2674 4.3832 24 1 13.4224 -0.9969 5.1311 25 1 13.9616 -3.3524 5.3305 26 1 14.6823 -2.1042 3.3798 27 6 8.8236 -1.9353 -0.0857 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 0.0002 32 1 1.4194 4.5222 0.0019 33 1 3.8827 4.5447 0.0024 34 1 6.0340 1.0048 0.0190 35 1 6.1698 -1.6703 0.9144 36 1 6.1776 -1.6736 -0.8655 37 1 8.6380 0.5364 1.6912 38 1 7.9241 -1.0490 2.2186 39 1 9.8464 -2.9933 2.1424 40 1 11.7731 -4.4457 4.4459 41 1 8.3800 -2.8634 0.2746 42 1 9.2838 -2.0397 -1.0683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086261535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:34 Heat of formation + Delta-G solvation = -1.626364 kcal Electronic energy + Delta-G solvation = -23887.041442 eV Core-core repulsion = 20254.736994 eV Total energy + Delta-G solvation = -3632.304447 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21453 -39.31835 -38.51964 -38.19676 -34.55943 -33.28563 -32.68133 -31.20733 -30.17981 -27.97454 -27.33376 -25.01108 -24.77603 -23.67511 -23.19683 -21.08030 -20.76700 -19.12502 -18.58542 -17.83514 -17.43144 -16.97526 -16.33930 -15.76518 -15.61245 -15.22487 -14.85155 -14.67107 -14.56741 -14.17036 -13.89696 -13.75605 -13.42048 -13.06471 -12.91539 -12.79666 -11.91076 -11.88081 -11.82096 -11.72651 -11.31410 -11.17140 -10.78489 -10.50154 -10.37783 -10.25585 -10.15712 -10.09434 -9.75509 -9.74107 -9.41130 -8.97336 -8.81923 -8.72258 -6.91124 -5.73660 -3.02181 0.32892 0.81963 2.67375 2.76671 3.13280 3.46470 3.50647 3.51885 3.60965 3.95475 4.16252 4.31109 4.54280 4.62548 4.68635 4.72724 4.78535 5.03032 5.08592 5.10397 5.16240 5.33089 5.47616 5.52238 5.52448 5.61957 5.90528 5.92422 5.94938 6.02642 6.15702 6.35893 6.40254 6.45173 6.57863 6.68869 6.80053 6.91483 7.19413 7.33114 7.68539 7.73010 8.29390 8.45117 9.55889 10.14943 10.49277 11.48780 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.002348 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.794969 B =11924.032899 C =12310.650091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.272 6.272 3 C 0.136 3.864 4 C -0.177 4.177 5 C -0.109 4.109 6 C 0.058 3.942 7 N -0.419 5.419 8 C 0.046 3.954 9 C 0.567 3.433 10 O -0.519 6.519 11 N -0.707 5.707 12 C 0.132 3.868 13 C -0.127 4.127 14 H 0.089 0.911 15 C -0.160 4.160 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.930 15.686 -10.804 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.085 3.915 4 C -0.203 4.203 5 C -0.129 4.129 6 C -0.103 4.103 7 N -0.131 5.131 8 C -0.093 4.093 9 C 0.351 3.649 10 O -0.394 6.394 11 N -0.358 5.358 12 C 0.009 3.991 13 C -0.146 4.146 14 H 0.107 0.893 15 C -0.201 4.201 16 C 0.053 3.947 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.182 4.182 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.183 0.817 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.119 14.663 -10.708 29.397 hybrid contribution -0.411 0.686 0.630 1.018 sum -23.530 15.349 -10.078 29.847 Atomic orbital electron populations 1.23234 0.78478 1.04834 1.01155 1.86442 1.20949 1.24461 1.86255 1.20075 0.92374 0.85817 0.93203 1.21764 1.01123 0.91834 1.05616 1.22216 0.95810 0.98428 0.96419 1.22725 0.91388 0.96423 0.99774 1.67631 1.39936 0.97404 1.08133 1.20774 0.88631 0.92994 1.06901 1.17604 0.82432 0.87169 0.77718 1.90840 1.71777 1.27542 1.49274 1.45861 1.05353 1.10949 1.73688 1.21476 0.89502 0.85947 1.02166 1.22638 0.92033 1.00013 0.99923 0.89289 1.23939 1.00706 1.00875 0.94625 1.21527 0.91444 0.92058 0.89622 0.90675 1.42410 1.26345 1.21530 1.44796 1.19264 0.99129 1.02823 1.16190 0.91159 1.24769 0.99239 0.96831 1.00176 1.69658 1.40444 1.10953 1.37066 0.86263 0.83474 0.77140 0.79281 1.21278 1.21720 1.21257 1.23444 0.97367 0.97028 1.00328 0.92517 0.87510 0.92461 0.83640 0.83923 0.81677 0.75560 0.91108 0.91650 0.92720 0.90371 0.78066 0.93438 0.90114 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.11 16 2 O -0.27 -3.23 8.56 -40.61 -0.35 -3.58 16 3 C 0.14 1.53 6.71 -38.56 -0.26 1.27 16 4 C -0.18 -1.30 9.13 -39.15 -0.36 -1.66 16 5 C -0.11 -0.66 10.10 -39.36 -0.40 -1.06 16 6 C 0.06 0.44 11.17 -17.55 -0.20 0.25 16 7 N -0.42 -4.64 9.54 -9.71 -0.09 -4.73 16 8 C 0.05 0.60 6.76 -82.88 -0.56 0.03 16 9 C 0.57 8.68 7.80 -12.34 -0.10 8.59 16 10 O -0.52 -9.50 15.14 -16.63 -0.25 -9.76 16 11 N -0.71 -9.76 5.54 -61.26 -0.34 -10.10 16 12 C 0.13 1.92 5.51 -4.04 -0.02 1.90 16 13 C -0.13 -1.83 3.75 -89.81 -0.34 -2.16 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.16 -2.80 7.43 -25.92 -0.19 -2.99 16 16 C 0.17 3.30 4.48 -67.11 -0.30 3.00 16 17 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 18 N -0.71 -18.19 5.40 -52.64 -0.28 -18.48 16 19 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 23 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C -0.14 -2.35 7.39 -25.92 -0.19 -2.54 16 28 H 0.06 0.26 7.70 -51.93 -0.40 -0.14 16 29 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.27 7.70 -51.93 -0.40 -0.13 16 31 H 0.15 0.64 6.46 -52.49 -0.34 0.30 16 32 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 33 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.41 5.03 7.80 -40.82 -0.32 4.71 16 35 H 0.07 1.14 7.84 -51.93 -0.41 0.74 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16 39 H 0.39 10.46 7.92 -40.82 -0.32 10.13 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -34.93 356.11 -8.35 -43.28 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.94 Total: 10.06 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.16 Total: -1.77 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.01 Total: -61.21 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.60 Total: -13.34 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.93 -8.35 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086261535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.656 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds