Wall clock time and date at job start Fri Apr 10 2020 17:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35655 * 116.99961 * 2 1 4 4 C 1.39337 * 120.54042 * 0.02562 * 3 2 1 5 5 C 1.38306 * 118.44149 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44100 * 359.97438 * 5 4 3 7 7 N 1.31373 * 121.07007 * 359.97438 * 6 5 4 8 8 C 1.32864 * 121.69465 * 359.77002 * 7 6 5 9 9 C 1.47831 * 119.78008 * 180.26625 * 8 7 6 10 10 O 1.21556 * 119.99712 * 180.22671 * 9 8 7 11 11 N 1.34774 * 120.00732 * 0.22422 * 9 8 7 12 12 C 1.46491 * 120.00329 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47132 * 180.02562 * 12 11 9 14 14 H 1.08999 * 112.84709 * 316.19367 * 13 12 11 15 15 C 1.53777 * 113.61527 * 87.50016 * 13 12 11 16 16 C 1.53779 * 87.08012 * 139.98278 * 15 13 12 17 17 H 1.08995 * 113.61719 * 89.11564 * 16 15 13 18 18 N 1.46509 * 113.61398 * 220.01993 * 16 15 13 19 19 C 1.36930 * 119.99901 * 252.49664 * 18 16 15 20 20 H 1.07997 * 120.00396 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00048 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99744 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46966 * 60.00276 * 23 21 19 25 25 H 1.48499 * 109.47051 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46926 * 300.00249 * 23 21 19 27 27 C 1.53776 * 113.61338 * 185.00100 * 13 12 11 28 28 H 1.08996 * 109.47672 * 59.99694 * 1 2 3 29 29 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47220 * 299.99750 * 1 2 3 31 31 H 1.08001 * 120.77745 * 359.95196 * 4 3 2 32 32 H 1.07998 * 120.27966 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.46262 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99196 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.47253 * 299.99631 * 12 11 9 36 36 H 1.08999 * 109.47581 * 60.00252 * 12 11 9 37 37 H 1.08998 * 113.61826 * 254.53060 * 15 13 12 38 38 H 1.09003 * 113.61413 * 25.43291 * 15 13 12 39 39 H 0.97000 * 119.99609 * 72.49532 * 18 16 15 40 40 H 0.97005 * 119.99495 * 179.97438 * 22 21 19 41 41 H 1.08995 * 113.61896 * 334.56378 * 27 13 12 42 42 H 1.09003 * 113.61646 * 105.38400 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5929 0.0011 6 6 3.3572 3.6012 0.0016 7 7 4.0419 2.4800 0.0021 8 6 3.4409 1.2950 0.0067 9 6 4.2531 0.0599 0.0130 10 8 3.7074 -1.0263 0.0130 11 7 5.5986 0.1379 0.0187 12 6 6.4033 -1.0861 0.0244 13 6 7.8889 -0.7198 0.0308 14 1 8.1295 0.0843 -0.6646 15 6 8.4657 -0.5104 1.4409 16 6 9.7258 -1.2416 0.9486 17 1 10.4695 -0.5796 0.5051 18 7 10.2965 -2.1586 1.9384 19 6 11.4653 -1.8374 2.5754 20 1 11.9662 -0.9079 2.3486 21 6 12.0058 -2.7060 3.5136 22 7 11.3951 -3.8386 3.7905 23 14 13.5999 -2.2674 4.3832 24 1 13.4224 -0.9969 5.1311 25 1 13.9616 -3.3524 5.3305 26 1 14.6823 -2.1042 3.3798 27 6 8.8236 -1.9353 -0.0857 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 0.0002 32 1 1.4194 4.5222 0.0019 33 1 3.8827 4.5447 0.0024 34 1 6.0340 1.0048 0.0190 35 1 6.1698 -1.6703 0.9144 36 1 6.1776 -1.6736 -0.8655 37 1 8.6380 0.5364 1.6912 38 1 7.9241 -1.0490 2.2186 39 1 9.8464 -2.9933 2.1424 40 1 11.7731 -4.4457 4.4459 41 1 8.3800 -2.8634 0.2746 42 1 9.2838 -2.0397 -1.0683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086261535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:33 Heat of formation + Delta-G solvation = -26.599578 kcal Electronic energy + Delta-G solvation = -23888.124361 eV Core-core repulsion = 20254.736994 eV Total energy + Delta-G solvation = -3633.387367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95142 -40.50153 -39.57864 -39.16293 -36.03356 -35.00224 -33.40579 -32.18981 -31.82025 -28.92992 -28.23656 -26.45175 -26.09145 -25.17697 -23.82897 -22.49335 -21.85640 -20.56658 -19.42968 -19.02545 -18.62961 -18.16276 -17.06700 -16.97735 -16.65920 -16.37181 -16.19185 -15.93754 -15.45740 -15.29087 -15.07064 -14.83006 -14.69386 -14.38595 -14.11515 -13.44791 -13.40511 -13.23243 -13.01510 -12.90852 -12.61470 -12.46640 -12.41871 -12.24047 -12.08198 -11.61292 -11.55851 -11.26197 -11.06127 -10.83874 -10.80794 -10.61144 -10.10016 -9.49952 -8.97090 -7.93292 -5.21862 -0.37068 0.22001 1.47462 1.51064 1.57038 1.75007 2.08728 2.21032 2.57825 2.82401 3.20562 3.38249 3.57866 3.71347 3.75305 3.77795 3.92930 4.00968 4.20342 4.25910 4.28019 4.34136 4.35458 4.43279 4.48647 4.56230 4.69373 4.74975 4.90485 4.98360 4.99063 5.01380 5.04661 5.22395 5.36407 5.42375 5.44021 5.53674 5.73367 6.20355 6.28771 6.45835 6.81714 7.21107 7.34048 8.12248 8.34659 9.30187 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.002348 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.794969 B =11924.032899 C =12310.650091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.121 3.879 4 C -0.172 4.172 5 C -0.087 4.087 6 C 0.053 3.947 7 N -0.439 5.439 8 C 0.002 3.998 9 C 0.560 3.440 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.138 3.862 13 C -0.096 4.096 14 H 0.120 0.880 15 C -0.154 4.154 16 C 0.145 3.855 17 H 0.083 0.917 18 N -0.730 5.730 19 C -0.243 4.243 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.275 1.275 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.189 0.811 33 H 0.198 0.802 34 H 0.417 0.583 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.067 0.933 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.134 19.312 -11.878 33.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.070 3.930 4 C -0.198 4.198 5 C -0.106 4.106 6 C -0.109 4.109 7 N -0.151 5.151 8 C -0.134 4.134 9 C 0.346 3.654 10 O -0.441 6.441 11 N -0.352 5.352 12 C 0.015 3.985 13 C -0.115 4.115 14 H 0.138 0.862 15 C -0.195 4.195 16 C 0.036 3.964 17 H 0.101 0.899 18 N -0.367 5.367 19 C -0.375 4.375 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.201 1.201 27 C -0.174 4.174 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.196 0.804 32 H 0.206 0.794 33 H 0.215 0.785 34 H 0.254 0.746 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.327 18.344 -11.825 32.682 hybrid contribution -0.177 -0.284 0.909 0.968 sum -24.504 18.061 -10.916 32.339 Atomic orbital electron populations 1.23516 0.76157 1.05810 1.03008 1.86383 1.23593 1.25687 1.86494 1.20318 0.92190 0.86905 0.93597 1.22183 1.02621 0.90787 1.04236 1.22751 0.95313 0.99657 0.92927 1.23430 0.92704 0.96404 0.98374 1.67552 1.40883 0.97661 1.09009 1.20426 0.89295 0.92602 1.11082 1.18138 0.82716 0.87895 0.76604 1.90792 1.72550 1.29398 1.51403 1.45766 1.05181 1.10878 1.73369 1.21287 0.89689 0.86324 1.01219 1.22471 0.91291 0.99572 0.98211 0.86238 1.23733 0.99194 1.00717 0.95838 1.21935 0.92397 0.92285 0.89783 0.89933 1.42631 1.26030 1.21995 1.46055 1.19711 0.99588 1.02685 1.15516 0.90273 1.25627 1.02886 0.97080 1.01697 1.69832 1.42237 1.12219 1.38114 0.85183 0.79662 0.76710 0.78055 1.20388 1.22392 1.20143 1.23318 0.96883 0.97127 1.00048 0.90403 0.87213 0.90664 0.80424 0.79375 0.78537 0.74581 0.93416 0.91421 0.91571 0.92734 0.79659 0.94106 0.91397 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.83 113.37 1.11 1.22 16 2 O -0.31 -7.54 8.56 -68.71 -0.59 -8.12 16 3 C 0.12 2.64 6.71 22.93 0.15 2.79 16 4 C -0.17 -2.00 9.13 22.55 0.21 -1.79 16 5 C -0.09 -0.67 10.10 22.41 0.23 -0.45 16 6 C 0.05 0.65 11.17 84.89 0.95 1.60 16 7 N -0.44 -9.18 9.54 -184.63 -1.76 -10.94 16 8 C 0.00 0.06 6.76 41.93 0.28 0.34 16 9 C 0.56 17.91 7.80 86.78 0.68 18.59 16 10 O -0.56 -21.92 15.14 17.10 0.26 -21.67 16 11 N -0.70 -19.62 5.54 -466.00 -2.58 -22.20 16 12 C 0.14 4.08 5.51 86.38 0.48 4.56 16 13 C -0.10 -2.68 3.75 -10.27 -0.04 -2.71 16 14 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 15 C -0.15 -5.35 7.43 31.12 0.23 -5.12 16 16 C 0.15 5.76 4.48 45.52 0.20 5.97 16 17 H 0.08 3.14 8.10 -2.39 -0.02 3.12 16 18 N -0.73 -37.98 5.40 -320.44 -1.73 -39.71 16 19 C -0.24 -13.78 9.97 84.03 0.84 -12.94 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 22 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 23 Si 0.98 47.00 29.55 68.60 2.03 49.02 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 C -0.13 -4.38 7.39 31.12 0.23 -4.15 16 28 H 0.08 0.54 7.70 -2.39 -0.02 0.52 16 29 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 0.57 7.70 -2.39 -0.02 0.55 16 31 H 0.18 0.79 6.46 -2.91 -0.02 0.77 16 32 H 0.19 -0.24 8.06 -2.91 -0.02 -0.27 16 33 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.42 10.06 7.80 -92.70 -0.72 9.33 16 35 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.16 7.90 -2.39 -0.02 2.14 16 39 H 0.37 20.99 7.92 -92.71 -0.73 20.25 16 40 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 41 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -80.20 356.11 1.52 -78.69 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.41 Total: 32.45 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.02 Total: 3.60 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -5.79 Total: -133.97 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.33 Total: -29.79 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -80.20 1.52 -78.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086261535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.086 kcal (2) G-P(sol) polarization free energy of solvation -80.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds