Wall clock time and date at job start Fri Apr 10 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35702 * 119.44357 * 2 1 4 4 C 1.35263 * 121.00228 * 180.02562 * 3 2 1 5 5 C 1.41155 * 119.86936 * 0.25867 * 4 3 2 6 6 C 1.48448 * 120.53589 * 179.72214 * 5 4 3 7 7 O 1.21475 * 119.99515 * 179.97438 * 6 5 4 8 8 N 1.34773 * 120.00140 * 359.97438 * 6 5 4 9 9 C 1.46503 * 120.00033 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47295 * 180.02562 * 9 8 6 11 11 H 1.08999 * 112.85065 * 43.80167 * 10 9 8 12 12 C 1.53786 * 113.61595 * 175.00009 * 10 9 8 13 13 C 1.53781 * 87.07969 * 139.97621 * 12 10 9 14 14 H 1.09005 * 113.61659 * 220.01617 * 13 12 10 15 15 N 1.46505 * 113.61224 * 89.11941 * 13 12 10 16 16 C 1.36937 * 119.99856 * 154.99934 * 15 13 12 17 17 H 1.08000 * 120.00269 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99919 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00057 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00018 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47009 * 89.99685 * 20 18 16 22 22 H 1.48497 * 109.47233 * 209.99806 * 20 18 16 23 23 H 1.48508 * 109.46883 * 330.00095 * 20 18 16 24 24 C 1.53779 * 87.08436 * 334.57026 * 13 12 10 25 25 C 1.38298 * 118.92043 * 359.49084 * 5 4 3 26 26 C 1.34600 * 119.43727 * 180.02562 * 2 1 3 27 27 O 1.22003 * 119.96432 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47558 * 89.99793 * 1 2 3 29 29 H 1.09001 * 109.47553 * 209.99917 * 1 2 3 30 30 H 1.09004 * 109.46937 * 329.99619 * 1 2 3 31 31 H 1.07999 * 119.49424 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.06171 * 179.97438 * 4 3 2 33 33 H 0.96999 * 119.99950 * 359.97438 * 8 6 5 34 34 H 1.09005 * 109.47072 * 300.00205 * 9 8 6 35 35 H 1.08999 * 109.47222 * 59.99670 * 9 8 6 36 36 H 1.08991 * 113.61281 * 254.52478 * 12 10 9 37 37 H 1.09001 * 113.61376 * 25.43098 * 12 10 9 38 38 H 0.97001 * 120.00201 * 334.99446 * 15 13 12 39 39 H 0.97000 * 119.99804 * 179.97438 * 19 18 16 40 40 H 1.09011 * 113.60980 * 270.88452 * 24 13 12 41 41 H 1.08995 * 113.61451 * 139.98409 * 24 13 12 42 42 H 1.08003 * 120.49077 * 180.26740 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2185 -0.0005 5 6 4.2202 0.0141 -0.0066 6 6 5.7045 0.0372 -0.0134 7 8 6.3281 -1.0052 -0.0182 8 7 6.3601 1.2147 -0.0144 9 6 7.8249 1.2375 -0.0206 10 6 8.3124 2.6877 -0.0198 11 1 7.7631 3.3186 0.6790 12 6 9.8398 2.8242 0.0968 13 6 9.7377 3.9628 -0.9318 14 1 10.5410 3.9590 -1.6686 15 7 9.5231 5.2807 -0.3289 16 6 9.9096 6.4110 -0.9985 17 1 10.3729 6.3309 -1.9707 18 6 9.7058 7.6597 -0.4275 19 7 10.0776 8.7461 -1.0707 20 14 8.9037 7.7983 1.2539 21 1 9.9509 7.7631 2.3063 22 1 8.1564 9.0785 1.3419 23 1 7.9663 6.6633 1.4502 24 6 8.4445 3.2940 -1.4269 25 6 3.5360 -1.1878 -0.0012 26 6 2.1265 -1.1722 -0.0005 27 8 1.5055 -2.2224 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.5748 2.1069 0.0004 32 1 3.9995 2.1677 -0.0009 33 1 5.8621 2.0471 -0.0110 34 1 8.2000 0.7280 0.8670 35 1 8.1924 0.7307 -0.9129 36 1 10.1749 3.1530 1.0803 37 1 10.3850 1.9537 -0.2682 38 1 9.1072 5.3526 0.5444 39 1 9.9349 9.6187 -0.6718 40 1 8.6084 2.5519 -2.2085 41 1 7.6534 4.0021 -1.6733 42 1 4.0737 -2.1245 -0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086404201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:36 Heat of formation + Delta-G solvation = 3.099840 kcal Electronic energy + Delta-G solvation = -23899.741461 eV Core-core repulsion = 20267.641957 eV Total energy + Delta-G solvation = -3632.099504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76908 -39.96764 -38.73014 -37.28896 -34.98198 -34.86681 -33.29698 -30.78158 -30.36071 -28.89811 -27.39819 -25.25395 -24.66575 -23.81024 -23.30956 -21.82989 -20.81237 -18.89845 -18.25179 -17.93742 -17.66951 -17.25401 -16.52865 -16.10120 -15.98927 -15.50761 -15.03556 -14.60601 -14.49529 -14.30192 -13.75574 -13.66156 -13.60002 -13.49228 -13.08498 -12.86919 -12.59749 -12.30272 -12.18920 -12.11171 -11.66217 -11.43272 -10.97986 -10.75082 -10.58181 -10.48694 -10.36558 -10.23350 -9.99982 -9.73265 -9.60516 -9.21082 -8.97834 -8.44396 -7.37122 -5.85754 -3.22285 0.05105 1.22438 2.15179 2.55495 2.84595 3.27555 3.31687 3.35109 3.37670 4.03611 4.15808 4.27251 4.49650 4.60931 4.65299 4.73439 4.80849 4.84524 4.89507 5.00462 5.10685 5.30809 5.32898 5.36216 5.42225 5.53980 5.68300 5.73287 5.77634 5.83388 5.93161 6.06155 6.16108 6.19421 6.41514 6.54683 6.54893 6.65897 6.82139 7.24654 7.53107 7.91434 7.92128 8.33847 9.11453 9.83513 10.02599 11.32330 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.002713 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.736411 B =10319.547397 C =11380.964803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.497 5.497 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.032 4.032 6 C 0.550 3.450 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.129 3.871 10 C -0.124 4.124 11 H 0.090 0.910 12 C -0.148 4.148 13 C 0.172 3.828 14 H 0.072 0.928 15 N -0.730 5.730 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.167 4.167 25 C -0.171 4.171 26 C 0.512 3.488 27 O -0.544 6.544 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 -14.992 3.260 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.208 5.208 3 C 0.007 3.993 4 C -0.238 4.238 5 C -0.038 4.038 6 C 0.336 3.664 7 O -0.405 6.405 8 N -0.364 5.364 9 C 0.006 3.994 10 C -0.143 4.143 11 H 0.109 0.891 12 C -0.188 4.188 13 C 0.061 3.939 14 H 0.090 0.910 15 N -0.370 5.370 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.579 5.579 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.208 4.208 25 C -0.194 4.194 26 C 0.313 3.687 27 O -0.425 6.425 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.187 0.813 32 H 0.168 0.832 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.348 -16.199 3.088 23.936 hybrid contribution -0.869 0.868 1.212 1.725 sum -18.217 -15.332 4.300 24.195 Atomic orbital electron populations 1.22219 0.76837 1.05212 1.04181 1.45410 1.09596 1.06797 1.59015 1.21867 0.93567 0.89474 0.94433 1.20698 0.92666 0.98567 1.11832 1.20520 0.93739 0.93956 0.95618 1.18304 0.86701 0.84150 0.77270 1.90787 1.68478 1.32204 1.49056 1.45983 1.08384 1.08117 1.73963 1.21564 0.77924 0.97570 1.02294 1.22771 0.97811 0.93741 0.99989 0.89141 1.23466 0.93795 1.00184 1.01355 1.21004 0.94861 0.84226 0.93845 0.91013 1.42513 1.72911 1.01271 1.20290 1.19113 1.33280 0.83304 1.02025 0.89017 1.24690 1.00972 0.95291 0.98106 1.69696 1.52482 0.97241 1.38441 0.86556 0.79457 0.76917 0.85558 1.21006 1.21678 1.20430 1.23872 1.02519 0.99951 0.94437 1.22742 0.92172 0.99754 1.04754 1.17091 0.88903 0.82909 0.79793 1.90971 1.69344 1.29723 1.52512 0.90319 0.88637 0.89379 0.81314 0.83188 0.76119 0.91393 0.90990 0.91362 0.89904 0.80533 0.92951 0.90855 0.91289 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.34 59.84 0.62 0.87 16 2 N -0.50 -3.69 2.98 -127.14 -0.38 -4.06 16 3 C 0.13 0.68 10.25 -16.90 -0.17 0.51 16 4 C -0.21 -1.42 9.51 -39.53 -0.38 -1.79 16 5 C -0.03 -0.31 5.91 -104.56 -0.62 -0.93 16 6 C 0.55 6.60 7.80 -12.05 -0.09 6.51 16 7 O -0.53 -8.25 16.39 5.39 0.09 -8.16 16 8 N -0.71 -7.35 5.51 -61.06 -0.34 -7.69 16 9 C 0.13 1.48 5.51 -4.04 -0.02 1.45 16 10 C -0.12 -1.56 3.63 -89.81 -0.33 -1.89 16 11 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 12 C -0.15 -2.05 7.39 -25.92 -0.19 -2.24 16 13 C 0.17 3.01 4.56 -67.12 -0.31 2.71 16 14 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 15 N -0.73 -16.06 5.11 -52.63 -0.27 -16.33 16 16 C -0.25 -6.66 10.45 -15.06 -0.16 -6.82 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 20 Si 0.88 21.00 27.73 -169.99 -4.71 16.28 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 24 C -0.17 -2.42 7.43 -25.92 -0.19 -2.61 16 25 C -0.17 -1.93 9.61 -38.53 -0.37 -2.30 16 26 C 0.51 5.79 7.42 -15.31 -0.11 5.68 16 27 O -0.54 -7.94 16.62 4.92 0.08 -7.85 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.56 7.37 -51.93 -0.38 0.18 16 30 H 0.09 0.12 8.00 -51.93 -0.42 -0.30 16 31 H 0.17 0.19 8.02 -52.49 -0.42 -0.23 16 32 H 0.15 0.66 6.50 -52.49 -0.34 0.32 16 33 H 0.40 3.26 6.58 -40.82 -0.27 3.00 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.36 7.76 5.76 -40.82 -0.24 7.53 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.96 7.90 -51.92 -0.41 0.55 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.16 1.97 7.69 -52.48 -0.40 1.57 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -35.63 353.31 -7.68 -43.31 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.83 Total: 7.51 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.42 Total: -0.78 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.21 Total: -55.64 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.17 Total: -16.01 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.63 -7.68 -43.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086404201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds