Wall clock time and date at job start Fri Apr 10 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35753 * 116.99606 * 2 1 4 4 C 1.39215 * 120.81557 * 0.02562 * 3 2 1 5 5 C 1.38308 * 119.28840 * 179.72853 * 4 3 2 6 6 N 1.31617 * 120.97223 * 359.97438 * 5 4 3 7 7 C 1.32794 * 121.77731 * 0.02562 * 6 5 4 8 8 C 1.48186 * 119.69661 * 180.02562 * 7 6 5 9 9 O 1.21507 * 120.00239 * 179.97438 * 8 7 6 10 10 N 1.34780 * 119.99608 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99894 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47454 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.84648 * 316.19662 * 12 11 10 14 14 C 1.53781 * 113.61582 * 87.50116 * 12 11 10 15 15 C 1.53774 * 87.08356 * 139.98230 * 14 12 11 16 16 H 1.08991 * 113.61797 * 220.01519 * 15 14 12 17 17 N 1.46509 * 113.68826 * 89.12544 * 15 14 12 18 18 C 1.36934 * 119.99817 * 107.46810 * 17 15 14 19 19 H 1.08007 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.38814 * 120.00399 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99171 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00557 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46974 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46948 * 119.99706 * 22 20 18 25 25 H 1.48501 * 109.47340 * 240.00127 * 22 20 18 26 26 C 1.53778 * 113.61816 * 184.99875 * 12 11 10 27 27 C 1.39106 * 120.61002 * 359.97438 * 7 6 5 28 28 H 1.09001 * 109.47072 * 60.00260 * 1 2 3 29 29 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47200 * 299.99970 * 1 2 3 31 31 H 1.07998 * 120.35410 * 359.74427 * 4 3 2 32 32 H 1.07998 * 119.51347 * 180.02562 * 5 4 3 33 33 H 0.96997 * 120.00169 * 359.97438 * 10 8 7 34 34 H 1.09004 * 109.47081 * 300.00216 * 11 10 8 35 35 H 1.08999 * 109.47488 * 59.99600 * 11 10 8 36 36 H 1.09002 * 113.61153 * 254.53364 * 14 12 11 37 37 H 1.08998 * 113.61554 * 25.43127 * 14 12 11 38 38 H 0.97001 * 120.00409 * 287.46184 * 17 15 14 39 39 H 0.97001 * 119.99476 * 179.97438 * 21 20 18 40 40 H 1.08999 * 113.61429 * 334.56381 * 26 12 11 41 41 H 1.09000 * 113.61941 * 105.46908 * 26 12 11 42 42 H 1.07992 * 120.50650 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3878 0.0005 5 6 1.9640 3.6030 0.0062 6 7 3.2790 3.6592 0.0116 7 6 4.0259 2.5613 0.0114 8 6 5.5031 2.6783 0.0182 9 8 6.1919 1.6773 0.0184 10 7 6.0827 3.8951 0.0241 11 6 7.5431 4.0109 0.0302 12 6 7.9375 5.4891 0.0356 13 1 7.3490 6.0867 -0.6606 14 6 8.0314 6.0966 1.4452 15 6 9.2792 6.8483 0.9528 16 1 10.0813 6.8925 1.6894 17 7 8.9830 8.1528 0.3553 18 6 9.2975 9.3022 1.0300 19 1 9.7636 9.2470 2.0027 20 6 9.0174 10.5382 0.4637 21 7 8.4499 10.6053 -0.7220 22 14 9.4458 12.1061 1.3843 23 1 10.0716 11.7605 2.6860 24 1 10.3974 12.9103 0.5762 25 1 8.2097 12.8938 1.6224 26 6 9.4530 5.7228 -0.0805 27 6 3.4344 1.3022 0.0058 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2242 2.3532 -0.0032 32 1 1.3923 4.5192 0.0071 33 1 5.5328 4.6942 0.0235 34 1 7.9423 3.5247 0.9204 35 1 7.9495 3.5299 -0.8595 36 1 7.1968 6.7520 1.6945 37 1 8.2421 5.3633 2.2235 38 1 8.5642 8.2024 -0.5182 39 1 8.2538 11.4691 -1.1175 40 1 10.0526 4.8872 0.2808 41 1 9.7664 6.0763 -1.0628 42 1 4.0435 0.4104 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086445504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:45 Heat of formation + Delta-G solvation = -4.081268 kcal Electronic energy + Delta-G solvation = -23643.313090 eV Core-core repulsion = 20010.902190 eV Total energy + Delta-G solvation = -3632.410900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16070 -39.71479 -38.68039 -38.11245 -34.69646 -33.20676 -31.97951 -31.83607 -30.11410 -28.21406 -27.43678 -25.02215 -24.44690 -23.74563 -23.47870 -21.67312 -20.82975 -19.11200 -18.23382 -17.63898 -17.30966 -16.59225 -16.39851 -16.12069 -15.79973 -15.45502 -15.01347 -14.81244 -14.38008 -14.23850 -14.10947 -13.81245 -13.57854 -13.10297 -12.90292 -12.84007 -12.25086 -12.09494 -11.88132 -11.82511 -11.36587 -11.02201 -10.84812 -10.50519 -10.43691 -10.12235 -9.99992 -9.77130 -9.67215 -9.65282 -9.43703 -9.34153 -8.95682 -8.86253 -6.97809 -5.79070 -3.07833 0.31251 0.90380 2.49911 2.59150 3.17047 3.42710 3.48610 3.50758 3.60809 3.93252 4.16789 4.40167 4.57302 4.57417 4.59440 4.71566 4.87651 4.93012 5.09796 5.11529 5.22402 5.28870 5.39421 5.47549 5.58992 5.66738 5.72984 5.88317 5.96820 6.02196 6.13867 6.24931 6.40881 6.43335 6.62541 6.67965 6.79358 6.93308 7.08237 7.34136 7.64058 7.71247 8.14553 8.40201 9.50873 10.08887 10.43102 11.43452 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023012 B = 0.002372 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.446838 B =11801.965600 C =12731.389668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.162 3.838 4 C -0.245 4.245 5 C 0.139 3.861 6 N -0.479 5.479 7 C 0.118 3.882 8 C 0.567 3.433 9 O -0.537 6.537 10 N -0.699 5.699 11 C 0.128 3.872 12 C -0.120 4.120 13 H 0.094 0.906 14 C -0.168 4.168 15 C 0.167 3.833 16 H 0.062 0.938 17 N -0.706 5.706 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.147 4.147 27 C -0.145 4.145 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.414 0.586 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.771 -20.226 0.823 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.108 3.892 4 C -0.266 4.266 5 C -0.020 4.020 6 N -0.194 5.194 7 C -0.019 4.019 8 C 0.351 3.649 9 O -0.414 6.414 10 N -0.350 5.350 11 C 0.006 3.994 12 C -0.138 4.138 13 H 0.113 0.887 14 C -0.209 4.209 15 C 0.055 3.945 16 H 0.080 0.920 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.187 4.187 27 C -0.167 4.167 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.185 0.815 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.656 -20.184 0.941 25.562 hybrid contribution -1.182 0.580 0.111 1.321 sum -16.838 -19.605 1.052 25.864 Atomic orbital electron populations 1.23185 0.77474 1.04632 1.01792 1.86101 1.22091 1.25958 1.87770 1.19206 0.92121 0.84863 0.93011 1.22428 1.01865 0.93195 1.09130 1.22634 0.89621 0.97312 0.92478 1.67651 1.07421 1.31145 1.13204 1.21028 0.94512 0.88638 0.97726 1.17777 0.85645 0.84059 0.77407 1.90784 1.63385 1.36654 1.50532 1.45925 1.08592 1.08183 1.72255 1.21584 0.78440 0.97452 1.01966 1.22716 0.98117 0.93053 0.99942 0.88746 1.23889 1.02737 0.99851 0.94456 1.21055 0.94348 0.85348 0.93770 0.91973 1.42179 1.72036 0.99174 1.21036 1.19341 1.33047 0.84381 1.00394 0.90941 1.24769 1.01559 0.97688 0.96988 1.69676 1.48073 1.23962 1.16318 0.86096 0.77514 0.83657 0.78798 1.20508 1.21877 1.21865 1.23445 0.94007 0.99799 1.01458 1.21392 0.91976 0.99780 1.03566 0.92153 0.87645 0.92158 0.83832 0.81531 0.74934 0.91260 0.91508 0.91428 0.91394 0.78092 0.93520 0.90434 0.91296 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.84 101.05 0.99 1.09 16 2 O -0.31 -2.61 10.51 -18.97 -0.20 -2.81 16 3 C 0.16 1.54 6.73 -38.85 -0.26 1.27 16 4 C -0.25 -1.85 9.12 -39.19 -0.36 -2.21 16 5 C 0.14 1.21 11.17 -17.62 -0.20 1.01 16 6 N -0.48 -5.63 9.54 -9.87 -0.09 -5.73 16 7 C 0.12 1.51 6.75 -83.04 -0.56 0.95 16 8 C 0.57 8.29 7.81 -12.17 -0.10 8.20 16 9 O -0.54 -9.11 16.32 5.36 0.09 -9.03 16 10 N -0.70 -9.65 5.55 -61.14 -0.34 -9.99 16 11 C 0.13 1.79 5.51 -4.04 -0.02 1.77 16 12 C -0.12 -1.83 3.63 -89.81 -0.33 -2.16 16 13 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 14 C -0.17 -2.85 7.43 -25.92 -0.19 -3.05 16 15 C 0.17 3.28 4.56 -67.12 -0.31 2.97 16 16 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 17 N -0.71 -17.45 5.31 -52.64 -0.28 -17.73 16 18 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C -0.15 -2.38 7.39 -25.92 -0.19 -2.57 16 27 C -0.15 -1.68 9.60 -38.89 -0.37 -2.05 16 28 H 0.06 0.18 7.70 -51.93 -0.40 -0.22 16 29 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.18 7.71 -51.93 -0.40 -0.22 16 31 H 0.14 0.62 6.45 -52.49 -0.34 0.28 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.41 5.50 7.80 -40.82 -0.32 5.18 16 34 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 38 H 0.39 10.07 7.90 -40.82 -0.32 9.75 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.16 1.79 7.64 -52.49 -0.40 1.39 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -32.91 358.21 -7.78 -40.70 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.92 Total: 11.17 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.14 Total: -2.05 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.01 Total: -60.63 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.11 Total: -11.83 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.91 -7.78 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086445504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.615 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds