Wall clock time and date at job start Fri Apr 10 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34675 * 119.70435 * 2 1 4 4 O 1.21963 * 119.95099 * 359.95703 * 3 2 1 5 5 C 1.41231 * 120.09033 * 179.97438 * 3 2 1 6 6 C 1.36117 * 119.50882 * 0.02562 * 5 3 2 7 7 C 1.40402 * 119.41662 * 359.73829 * 6 5 3 8 8 C 1.36300 * 119.90656 * 0.52842 * 7 6 5 9 9 C 1.47881 * 119.76052 * 179.73683 * 8 7 6 10 10 O 1.21538 * 119.99861 * 174.34324 * 9 8 7 11 11 N 1.34774 * 119.99754 * 354.34280 * 9 8 7 12 12 C 1.46506 * 120.00039 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47061 * 180.02562 * 12 11 9 14 14 H 1.08993 * 112.84942 * 316.19449 * 13 12 11 15 15 C 1.53781 * 113.61590 * 87.50609 * 13 12 11 16 16 C 1.53781 * 87.08204 * 139.97614 * 15 13 12 17 17 H 1.08993 * 113.61097 * 220.01479 * 16 15 13 18 18 N 1.46494 * 113.68681 * 89.12600 * 16 15 13 19 19 C 1.36940 * 119.99926 * 107.46301 * 18 16 15 20 20 H 1.07998 * 120.00053 * 0.02562 * 19 18 16 21 21 C 1.38807 * 120.00132 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00177 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00120 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47120 * 60.00254 * 23 21 19 25 25 H 1.48504 * 109.47101 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47122 * 300.00133 * 23 21 19 27 27 C 1.53782 * 87.08148 * 334.56690 * 16 15 13 28 28 H 1.09000 * 109.46738 * 244.81255 * 1 2 3 29 29 H 1.08993 * 109.47419 * 4.80923 * 1 2 3 30 30 H 1.09001 * 109.47377 * 124.81627 * 1 2 3 31 31 H 1.08000 * 120.24772 * 180.02562 * 5 3 2 32 32 H 1.07999 * 120.28883 * 179.97438 * 6 5 3 33 33 H 1.08007 * 120.04848 * 180.28985 * 7 6 5 34 34 H 0.97004 * 120.00106 * 0.02562 * 11 9 8 35 35 H 1.08995 * 109.47161 * 300.00497 * 12 11 9 36 36 H 1.09005 * 109.46841 * 60.00316 * 12 11 9 37 37 H 1.09001 * 113.61408 * 254.53263 * 15 13 12 38 38 H 1.09009 * 113.61158 * 25.42568 * 15 13 12 39 39 H 0.96998 * 120.00156 * 287.46199 * 18 16 15 40 40 H 0.96999 * 120.00079 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.61254 * 270.88441 * 27 16 15 42 42 H 1.08995 * 113.68928 * 139.98946 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1323 1.1698 0.0000 4 8 1.5161 2.2223 -0.0008 5 6 3.5446 1.1793 0.0005 6 6 4.2230 -0.0008 0.0005 7 6 3.5064 -1.2081 0.0056 8 6 2.1436 -1.1896 -0.0005 9 6 1.3921 -2.4632 -0.0010 10 8 0.1807 -2.4541 0.0973 11 7 2.0506 -3.6341 -0.1107 12 6 1.3062 -4.8959 -0.1107 13 6 2.2841 -6.0649 -0.2455 14 1 3.0531 -5.8888 -0.9976 15 6 2.8381 -6.5629 1.0998 16 6 2.6938 -7.9887 0.5419 17 1 2.3280 -8.7089 1.2737 18 7 3.8784 -8.4615 -0.1785 19 6 4.6881 -9.4118 0.3842 20 1 4.4530 -9.8131 1.3589 21 6 5.8103 -9.8602 -0.2987 22 7 6.0966 -9.3716 -1.4868 23 14 6.9143 -11.1571 0.4686 24 1 6.1282 -12.3923 0.7169 25 1 8.0365 -11.4613 -0.4552 26 1 7.4561 -10.6483 1.7541 27 6 1.5942 -7.4328 -0.3783 28 1 -0.3633 -0.4374 0.9300 29 1 -0.3634 1.0240 -0.0862 30 1 -0.3634 -0.5867 -0.8437 31 1 4.0823 2.1159 0.0010 32 1 5.3030 -0.0082 0.0005 33 1 4.0344 -2.1504 0.0104 34 1 3.0174 -3.6413 -0.1888 35 1 0.7529 -4.9914 0.8236 36 1 0.6090 -4.9065 -0.9485 37 1 3.8714 -6.2680 1.2827 38 1 2.1820 -6.3565 1.9455 39 1 4.0894 -8.1014 -1.0542 40 1 6.8806 -9.6852 -1.9642 41 1 0.5981 -7.4642 0.0632 42 1 1.6221 -7.8396 -1.3892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086474034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:48 Heat of formation + Delta-G solvation = -18.563159 kcal Electronic energy + Delta-G solvation = -24178.462451 eV Core-core repulsion = 20545.423569 eV Total energy + Delta-G solvation = -3633.038882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.66505 -40.82480 -39.85152 -37.90572 -36.45439 -35.47244 -34.89073 -32.32002 -31.41408 -28.75444 -28.54046 -26.38744 -26.05013 -25.38787 -23.75971 -23.04679 -22.12476 -19.99082 -19.38329 -18.96171 -18.52884 -18.00802 -17.45501 -16.97557 -16.79318 -16.57186 -16.30062 -15.72779 -15.68762 -15.58140 -14.98939 -14.77038 -14.60657 -14.20572 -13.81318 -13.73851 -13.49212 -13.24756 -13.17123 -12.92261 -12.87988 -12.83315 -12.59104 -12.17840 -12.04659 -11.55967 -11.45717 -11.39067 -11.17272 -11.01878 -10.86504 -10.73484 -10.19271 -9.18910 -8.95963 -7.92752 -5.20215 -0.66863 0.56075 1.29880 1.50896 1.52291 1.58407 1.66453 2.00249 2.55729 2.58314 3.26750 3.40422 3.52950 3.75450 3.80482 3.84067 3.90455 4.11254 4.16305 4.22569 4.35913 4.37390 4.40752 4.44557 4.69156 4.75596 4.78882 4.83606 4.93783 4.98583 5.04822 5.11592 5.15414 5.21926 5.36299 5.40157 5.47695 5.57179 5.70937 5.83827 6.30971 6.31607 6.78840 6.91915 7.36884 8.14794 8.36475 9.30136 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023312 B = 0.002574 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.801825 B =10874.959284 C =11794.783135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.482 5.482 3 C 0.496 3.504 4 O -0.599 6.599 5 C -0.229 4.229 6 C -0.006 4.006 7 C -0.157 4.157 8 C 0.094 3.906 9 C 0.554 3.446 10 O -0.555 6.555 11 N -0.693 5.693 12 C 0.140 3.860 13 C -0.102 4.102 14 H 0.087 0.913 15 C -0.153 4.153 16 C 0.141 3.859 17 H 0.056 0.944 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.278 1.278 27 C -0.136 4.136 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.182 0.818 34 H 0.417 0.583 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.105 0.895 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 16.190 3.304 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.193 5.193 3 C 0.300 3.700 4 O -0.486 6.486 5 C -0.251 4.251 6 C -0.027 4.027 7 C -0.182 4.182 8 C -0.016 4.016 9 C 0.340 3.660 10 O -0.435 6.435 11 N -0.346 5.346 12 C 0.017 3.983 13 C -0.121 4.121 14 H 0.106 0.894 15 C -0.194 4.194 16 C 0.031 3.969 17 H 0.075 0.925 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.204 1.204 27 C -0.175 4.175 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.199 0.801 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.260 16.652 3.490 18.498 hybrid contribution 1.060 -0.614 -0.203 1.242 sum -6.199 16.038 3.287 17.506 Atomic orbital electron populations 1.22209 0.76345 1.03839 1.04763 1.45425 1.10069 1.05584 1.58252 1.17921 0.90635 0.82101 0.79366 1.90902 1.70944 1.30584 1.56154 1.22555 0.90935 1.02231 1.09368 1.21879 1.03158 0.89835 0.87874 1.21488 0.90148 1.02123 1.04414 1.20237 0.93286 0.85840 1.02231 1.17940 0.86777 0.83758 0.77564 1.90822 1.14436 1.87466 1.50732 1.45802 1.12002 1.04769 1.71989 1.21457 0.93896 0.80283 1.02637 1.22513 0.97804 0.92984 0.98769 0.89448 1.23723 1.00604 0.98627 0.96410 1.21399 0.87411 0.93808 0.94308 0.92550 1.42277 1.26537 1.46716 1.20224 1.19607 1.03306 1.13654 1.00761 0.90717 1.25483 1.00674 1.02896 0.97464 1.69784 1.29324 1.47954 1.14745 0.85286 0.78257 0.79383 0.77278 1.20698 1.22374 1.20404 1.23355 0.99001 0.94795 1.00336 0.89801 0.89726 0.89483 0.81502 0.79523 0.80094 0.74455 0.90546 0.91003 0.92885 0.88934 0.79239 0.94037 0.87655 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 8.93 127.77 1.14 2.69 16 2 N -0.48 -10.79 3.02 -660.62 -1.99 -12.78 16 3 C 0.50 12.23 7.43 84.99 0.63 12.86 16 4 O -0.60 -19.44 16.39 -5.20 -0.09 -19.52 16 5 C -0.23 -3.71 10.00 22.51 0.23 -3.49 16 6 C -0.01 -0.06 10.08 22.30 0.22 0.16 16 7 C -0.16 -1.78 9.49 22.34 0.21 -1.56 16 8 C 0.09 1.68 6.63 40.45 0.27 1.95 16 9 C 0.55 11.03 7.70 86.80 0.67 11.70 16 10 O -0.55 -14.21 13.21 -3.84 -0.05 -14.26 16 11 N -0.69 -11.38 5.50 -465.94 -2.56 -13.94 16 12 C 0.14 2.63 5.51 86.38 0.48 3.11 16 13 C -0.10 -2.33 3.63 -10.27 -0.04 -2.37 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.15 -4.09 7.43 31.12 0.23 -3.86 16 16 C 0.14 4.83 4.56 45.52 0.21 5.03 16 17 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 18 N -0.72 -33.06 5.31 -320.47 -1.70 -34.76 16 19 C -0.24 -12.60 9.97 84.03 0.84 -11.76 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 22 N -0.97 -56.13 13.06 21.65 0.28 -55.84 16 23 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.14 -3.57 7.39 31.12 0.23 -3.34 16 28 H 0.08 1.85 7.39 -2.39 -0.02 1.83 16 29 H 0.08 1.98 6.88 -2.39 -0.02 1.96 16 30 H 0.09 1.91 7.05 -2.39 -0.02 1.90 16 31 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.19 0.35 8.06 -2.91 -0.02 0.32 16 33 H 0.18 0.96 6.33 -2.91 -0.02 0.94 16 34 H 0.42 5.02 6.48 -92.71 -0.60 4.42 16 35 H 0.08 1.45 7.84 -2.39 -0.02 1.43 16 36 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.07 7.90 -2.38 -0.02 2.05 16 39 H 0.38 18.44 7.90 -92.71 -0.73 17.71 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.13 350.41 1.42 -70.71 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.28 Total: 26.76 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.78 Total: 7.63 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -5.97 Total: -117.33 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.14 Total: -33.78 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.13 1.42 -70.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086474034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.144 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds