Wall clock time and date at job start Fri Apr 10 2020 17:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47150 * 270.41532 * 3 2 1 5 5 C 1.34774 * 120.00221 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99962 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00439 * 180.02562 * 5 4 3 8 8 C 1.50694 * 109.47319 * 179.97438 * 7 5 4 9 9 O 1.21281 * 119.99974 * 0.02562 * 8 7 5 10 10 N 1.34778 * 119.99973 * 179.97438 * 8 7 5 11 11 C 1.47892 * 134.34311 * 180.02562 * 10 8 7 12 12 C 1.52375 * 85.73257 * 156.54358 * 11 10 8 13 13 C 1.48161 * 134.44944 * 359.88843 * 10 8 7 14 14 C 1.53654 * 116.39618 * 141.28147 * 12 11 10 15 15 C 1.54605 * 102.73195 * 162.91767 * 14 12 11 16 16 N 1.47144 * 107.36262 * 339.24918 * 15 14 12 17 17 C 1.36937 * 125.58305 * 179.09493 * 16 15 14 18 18 H 1.08002 * 119.99549 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00398 * 359.97438 * 17 16 15 20 20 N 1.31627 * 119.99797 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47012 * 89.99953 * 21 19 17 23 23 H 1.48494 * 109.47210 * 209.99595 * 21 19 17 24 24 H 1.48500 * 109.47093 * 330.00043 * 21 19 17 25 25 C 1.47719 * 108.82637 * 359.07314 * 16 15 14 26 26 H 4.40643 * 5.51422 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47173 * 150.41692 * 3 2 1 28 28 H 1.08994 * 109.47150 * 30.41440 * 3 2 1 29 29 H 0.97002 * 120.00014 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.47047 * 59.99269 * 7 5 4 31 31 H 1.09003 * 109.46510 * 300.00025 * 7 5 4 32 32 H 1.09002 * 113.85436 * 42.31390 * 11 10 8 33 33 H 1.08998 * 113.84884 * 270.77567 * 11 10 8 34 34 H 1.08997 * 113.74300 * 89.28005 * 13 10 8 35 35 H 1.09006 * 114.04347 * 317.66282 * 13 10 8 36 36 H 1.08994 * 110.76150 * 281.23220 * 14 12 11 37 37 H 1.09004 * 110.75900 * 44.61270 * 14 12 11 38 38 H 1.08996 * 109.86482 * 98.69071 * 15 14 12 39 39 H 1.08997 * 109.86858 * 219.66814 * 15 14 12 40 40 H 0.96999 * 119.99806 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.40181 * 263.66202 * 25 16 15 42 42 H 1.09001 * 110.40025 * 141.25086 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0091 1.3812 5 6 4.4594 -0.0108 1.6275 6 8 5.2475 -0.0048 0.7057 7 6 4.9617 -0.0215 3.0482 8 6 6.4687 -0.0220 3.0482 9 8 7.0751 -0.0139 1.9979 10 7 7.1426 -0.0303 4.2154 11 6 8.5754 -0.0328 4.5817 12 6 8.1202 0.5625 5.9084 13 6 6.7454 -0.0380 5.6427 14 6 8.8506 0.0667 7.1661 15 6 8.4888 1.1420 8.2164 16 7 8.0788 2.3506 7.4841 17 6 7.6640 3.5249 8.0535 18 1 7.3831 4.3589 7.4274 19 6 7.6047 3.6435 9.4353 20 7 7.9467 2.6269 10.1983 21 14 7.0396 5.2457 10.2119 22 1 5.5670 5.2121 10.4002 23 1 7.7032 5.4184 11.5291 24 1 7.3994 6.3802 9.3238 25 6 8.1883 2.0898 6.0343 26 1 -1.0500 0.0002 0.0000 27 1 3.0089 0.8945 -0.5074 28 1 3.0097 -0.8854 -0.5202 29 1 2.5040 -0.0151 2.1185 30 1 4.5984 -0.9153 3.5554 31 1 4.5983 0.8646 3.5687 32 1 9.1850 0.6427 3.9815 33 1 9.0058 -1.0303 4.6707 34 1 6.6137 -1.0379 6.0562 35 1 5.9188 0.6327 5.8773 36 1 8.4770 -0.9111 7.4697 37 1 9.9276 0.0356 7.0004 38 1 7.6667 0.7895 8.8392 39 1 9.3573 1.3598 8.8379 40 1 7.9049 2.7096 11.1638 41 1 9.1396 2.4604 5.6524 42 1 7.3577 2.5524 5.5012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147392462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:08 Heat of formation + Delta-G solvation = 34.325191 kcal Electronic energy + Delta-G solvation = -24386.477866 eV Core-core repulsion = 20755.732394 eV Total energy + Delta-G solvation = -3630.745471 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81545 -40.85768 -39.11798 -37.15987 -36.40225 -34.10121 -33.66975 -32.20661 -31.08836 -29.62154 -27.96772 -27.32009 -27.05512 -25.20637 -22.15317 -21.89298 -20.57064 -19.68206 -19.31988 -18.78247 -18.31445 -17.45501 -17.17283 -16.95782 -16.76139 -16.40885 -16.26328 -15.66982 -15.51727 -15.25054 -14.73444 -14.42184 -14.24976 -14.12660 -13.93315 -13.68018 -13.58970 -13.16109 -12.95866 -12.80563 -12.74328 -12.38166 -12.01088 -11.90021 -11.82139 -11.68965 -11.62358 -11.47151 -11.24881 -11.06707 -10.64830 -10.42196 -10.14329 -9.62927 -8.84562 -7.81182 -5.15673 1.31998 1.48814 1.49928 1.56087 1.58370 1.70917 1.82902 1.83852 2.51756 2.56369 3.28503 3.34785 3.35717 3.48339 3.69707 3.75224 3.84566 4.17554 4.24911 4.32182 4.36462 4.49186 4.49739 4.56512 4.64736 4.70611 4.77073 4.83261 4.92841 4.99814 5.03037 5.14596 5.17143 5.27793 5.29322 5.50007 5.76795 5.86554 6.25086 6.46268 6.56783 6.75629 7.14127 7.15958 7.30020 7.82007 8.45856 9.28524 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002960 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.975501 B = 9455.880503 C =10704.933501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.717 5.717 5 C 0.514 3.486 6 O -0.550 6.550 7 C -0.149 4.149 8 C 0.527 3.473 9 O -0.561 6.561 10 N -0.644 5.644 11 C 0.127 3.873 12 C -0.099 4.099 13 C 0.130 3.870 14 C -0.113 4.113 15 C 0.184 3.816 16 N -0.624 5.624 17 C -0.239 4.239 18 H 0.076 0.924 19 C -0.062 4.062 20 N -0.947 5.947 21 Si 0.973 3.027 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.275 1.275 25 C 0.158 3.842 26 H 0.254 0.746 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.418 0.582 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.020 0.980 39 H 0.002 0.998 40 H 0.246 0.754 41 H 0.017 0.983 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -10.218 -12.713 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.249 4.249 3 C 0.109 3.891 4 N -0.372 5.372 5 C 0.300 3.700 6 O -0.426 6.426 7 C -0.191 4.191 8 C 0.316 3.684 9 O -0.439 6.439 10 N -0.380 5.380 11 C 0.005 3.995 12 C -0.101 4.101 13 C 0.009 3.991 14 C -0.151 4.151 15 C 0.060 3.940 16 N -0.351 5.351 17 C -0.368 4.368 18 H 0.094 0.906 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.802 3.198 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.200 1.200 25 C 0.033 3.967 26 H 0.271 0.729 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.256 0.744 30 H 0.178 0.822 31 H 0.166 0.834 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.038 0.962 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.370 -10.109 -13.959 21.215 hybrid contribution -0.356 1.161 1.000 1.573 sum -12.725 -8.947 -12.959 20.247 Atomic orbital electron populations 1.25858 0.96660 0.98685 0.95061 1.22928 0.94364 1.02803 1.04760 1.17924 0.83993 1.03127 0.84018 1.45831 1.06453 1.76087 1.08878 1.20427 0.82167 0.76046 0.91366 1.90860 1.55875 1.48690 1.47156 1.21550 0.92132 1.09852 0.95599 1.20239 0.90205 0.76146 0.81825 1.90826 1.70819 1.50719 1.31538 1.50335 1.09279 1.72873 1.05515 1.22997 0.83287 1.01679 0.91532 1.22268 0.97388 0.95631 0.94783 1.23215 0.96983 1.02215 0.76669 1.22523 1.00251 0.99030 0.93333 1.20999 0.96370 0.84821 0.91845 1.44843 1.77786 1.11514 1.00927 1.19366 1.36460 0.90722 0.90288 0.90577 1.25541 1.02545 1.00809 0.96586 1.70166 1.55097 1.31070 1.03300 0.85161 0.77721 0.79518 0.77418 1.20990 1.22273 1.19991 1.21130 0.97671 0.92747 0.85114 0.72933 0.89994 0.89625 0.74448 0.82175 0.83414 0.91298 0.87057 0.86240 0.89454 0.88407 0.90687 0.96191 0.97978 0.94417 0.96499 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 19.25 74.32 1.43 -0.01 16 2 C -0.25 -3.55 13.46 31.13 0.42 -3.13 16 3 C 0.23 3.95 6.15 84.57 0.52 4.47 16 4 N -0.72 -11.64 5.54 -472.13 -2.61 -14.25 16 5 C 0.51 12.21 7.82 87.66 0.69 12.90 16 6 O -0.55 -19.61 14.18 20.41 0.29 -19.32 16 7 C -0.15 -2.76 5.94 29.10 0.17 -2.59 16 8 C 0.53 15.34 8.05 87.65 0.71 16.05 16 9 O -0.56 -22.56 14.90 20.41 0.30 -22.25 16 10 N -0.64 -16.67 3.63 -859.08 -3.12 -19.79 16 11 C 0.13 3.28 8.20 85.91 0.70 3.98 16 12 C -0.10 -2.86 0.99 -52.18 -0.05 -2.91 16 13 C 0.13 2.97 7.93 85.85 0.68 3.65 16 14 C -0.11 -3.44 6.36 31.36 0.20 -3.24 16 15 C 0.18 8.33 5.39 86.80 0.47 8.80 16 16 N -0.62 -30.28 3.41 -693.34 -2.36 -32.64 16 17 C -0.24 -12.97 10.28 84.03 0.86 -12.10 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 20 N -0.95 -54.76 10.30 21.65 0.22 -54.54 16 21 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C 0.16 6.14 6.63 86.28 0.57 6.71 16 26 H 0.25 0.45 7.80 -4.42 -0.03 0.42 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.42 4.08 8.45 -92.71 -0.78 3.30 16 30 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.12 2.01 8.04 -2.39 -0.02 1.99 16 35 H 0.09 2.04 8.12 -2.38 -0.02 2.02 16 36 H 0.10 2.38 7.99 -2.39 -0.02 2.36 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.02 0.99 7.38 -2.39 -0.02 0.98 16 39 H 0.00 0.10 7.49 -2.39 -0.02 0.08 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 Total: -1.00 -82.34 359.38 2.83 -79.52 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.24 Total: 7.04 kcal Atomic # 6 Polarization: 21.81 SS G_CDS: 7.84 Total: 29.65 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -7.87 Total: -121.23 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: 0.59 Total: -41.58 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.34 2.83 -79.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147392462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.841 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds