Wall clock time and date at job start Fri Apr 10 2020 17:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99877 * 2 1 4 4 C 1.34777 * 120.00339 * 179.97438 * 2 1 3 5 5 O 1.21521 * 119.99867 * 354.56028 * 4 2 1 6 6 C 1.48030 * 119.99862 * 174.83802 * 4 2 1 7 7 C 1.39555 * 120.00233 * 335.45675 * 6 4 2 8 8 C 1.37824 * 119.99799 * 179.77254 * 7 6 4 9 9 C 1.39546 * 120.00149 * 0.50362 * 8 7 6 10 10 C 1.48033 * 120.00134 * 179.72348 * 9 8 7 11 11 O 1.21532 * 120.00538 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00147 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00225 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47012 * 180.02562 * 13 12 10 15 15 N 1.46497 * 109.46986 * 180.02562 * 14 13 12 16 16 C 1.36944 * 119.99995 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00063 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47078 * 59.99564 * 20 18 16 22 22 H 1.48495 * 109.47384 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46886 * 300.00063 * 20 18 16 24 24 C 1.39558 * 120.00130 * 359.74806 * 9 8 7 25 25 C 1.37819 * 119.99796 * 0.02562 * 24 9 8 26 26 H 1.09000 * 109.47096 * 239.99861 * 1 2 3 27 27 H 1.08999 * 109.47446 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46920 * 120.00034 * 1 2 3 29 29 H 1.09000 * 109.47368 * 275.77013 * 3 2 1 30 30 H 1.09005 * 109.46877 * 35.76834 * 3 2 1 31 31 H 1.08994 * 109.47229 * 155.76530 * 3 2 1 32 32 H 1.08002 * 119.99924 * 359.97438 * 7 6 4 33 33 H 1.08002 * 119.99782 * 180.25490 * 8 7 6 34 34 H 0.97006 * 119.99478 * 359.97438 * 12 10 9 35 35 H 1.08994 * 109.47303 * 299.99979 * 13 12 10 36 36 H 1.08999 * 109.47035 * 60.00201 * 13 12 10 37 37 H 1.09007 * 109.46984 * 300.00162 * 14 13 12 38 38 H 1.08999 * 109.47139 * 60.00163 * 14 13 12 39 39 H 0.96996 * 120.00228 * 359.97438 * 15 14 13 40 40 H 0.97003 * 120.00107 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.00097 * 179.97438 * 24 9 8 42 42 H 1.08003 * 119.99813 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5355 -2.2172 0.1008 6 6 3.6147 -1.1697 -0.1148 7 6 4.2693 -0.0955 -0.7191 8 6 5.6436 -0.0957 -0.8222 9 6 6.3799 -1.1750 -0.3319 10 6 7.8557 -1.1781 -0.4482 11 8 8.4970 -2.1181 -0.0216 12 7 8.4883 -0.1383 -1.0272 13 6 9.9487 -0.1411 -1.1418 14 6 10.4086 1.1449 -1.8316 15 7 11.8691 1.1418 -1.9467 16 6 12.5118 2.1988 -2.5342 17 1 11.9421 3.0343 -2.9130 18 6 13.8957 2.1961 -2.6428 19 7 14.5901 1.1780 -2.1807 20 14 14.7724 3.6375 -3.4448 21 1 14.4741 4.8807 -2.6894 22 1 16.2370 3.3924 -3.4373 23 1 14.3028 3.7850 -4.8459 24 6 5.7250 -2.2516 0.2677 25 6 4.3510 -2.2493 0.3750 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8901 29 1 2.2897 1.6351 -1.0224 30 1 1.6569 2.0003 0.6007 31 1 3.1906 1.1149 0.4218 32 1 3.6991 0.7376 -1.1030 33 1 6.1505 0.7375 -1.2862 34 1 7.9764 0.6119 -1.3681 35 1 10.3911 -0.1976 -0.1473 36 1 10.2654 -1.0024 -1.7298 37 1 9.9662 1.2019 -2.8262 38 1 10.0920 2.0061 -1.2431 39 1 12.3809 0.3915 -1.6061 40 1 15.5572 1.1763 -2.2563 41 1 6.2949 -3.0871 0.6468 42 1 3.8442 -3.0827 0.8387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148179461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:15 Heat of formation + Delta-G solvation = -7.036871 kcal Electronic energy + Delta-G solvation = -23445.985855 eV Core-core repulsion = 19813.446790 eV Total energy + Delta-G solvation = -3632.539065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99999 -39.88972 -38.10933 -36.21913 -35.77432 -33.99258 -32.22439 -31.66194 -30.98186 -28.54560 -27.93625 -26.95256 -24.54059 -23.42821 -22.87761 -21.53877 -20.85089 -20.20631 -18.17024 -17.64477 -17.19041 -16.89046 -16.38105 -15.81372 -15.44513 -15.28875 -14.83961 -14.72782 -14.49677 -14.20008 -13.98783 -13.72935 -13.58594 -13.31379 -13.21429 -13.02951 -12.90902 -12.72211 -12.65417 -12.20126 -11.50486 -11.36467 -11.14107 -10.86889 -10.82468 -10.43136 -10.19580 -10.02253 -9.76915 -9.48212 -9.35889 -9.21093 -9.03103 -8.88207 -7.03164 -5.82327 -3.13525 0.13890 0.92464 2.14564 2.44247 2.87933 3.08487 3.40577 3.44904 3.46462 3.56292 3.93141 4.25735 4.41496 4.50853 4.57428 4.60935 4.73247 4.77282 4.89391 4.99486 5.06620 5.12809 5.24374 5.30682 5.44588 5.46506 5.53947 5.72297 5.74323 5.79181 5.90219 5.94848 5.95793 6.09380 6.34889 6.39933 6.64459 6.66542 6.76727 7.47824 7.62171 7.64077 8.16023 8.35036 9.46265 10.00556 10.35166 11.40019 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.002136 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.040328 B =13103.336750 C =14011.210938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.618 5.618 3 C 0.061 3.939 4 C 0.557 3.443 5 O -0.530 6.530 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.097 4.097 9 C -0.101 4.101 10 C 0.550 3.450 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.729 5.729 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.069 4.069 25 C -0.068 4.068 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.145 0.855 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.035 0.223 4.798 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C -0.082 4.082 4 C 0.346 3.654 5 O -0.407 6.407 6 C -0.121 4.121 7 C -0.130 4.130 8 C -0.115 4.115 9 C -0.104 4.104 10 C 0.336 3.664 11 O -0.409 6.409 12 N -0.367 5.367 13 C -0.014 4.014 14 C 0.016 3.984 15 N -0.374 5.374 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.087 4.087 25 C -0.087 4.087 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.163 0.837 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -28.831 -0.837 5.069 29.285 hybrid contribution 0.475 1.083 -0.566 1.311 sum -28.356 0.246 4.504 28.713 Atomic orbital electron populations 1.21659 0.78424 1.02539 1.02662 1.47621 1.07329 1.06251 1.73933 1.22526 0.98621 0.85070 1.01965 1.18438 0.87153 0.83345 0.76427 1.90785 1.69827 1.31092 1.49034 1.20004 0.92714 0.96594 1.02790 1.21965 0.94695 0.98054 0.98255 1.21333 0.93918 0.97774 0.98494 1.20277 0.93456 0.96049 1.00623 1.18265 0.86930 0.82747 0.78458 1.90798 1.67365 1.34709 1.48057 1.45862 1.08833 1.21669 1.60304 1.21646 0.77623 1.00190 1.01906 1.20756 0.87575 0.93207 0.96823 1.42175 0.99231 1.23767 1.72262 1.19135 0.89640 0.97626 1.31307 0.91071 1.24792 0.96339 0.98159 1.01517 1.69656 1.06219 1.30730 1.51171 0.86216 0.78709 0.81762 0.79140 1.21177 1.21598 1.21179 1.21308 0.93722 0.97790 0.95927 1.21229 0.93253 0.97060 0.97108 0.91810 0.90391 0.91886 0.91640 0.90892 0.89015 0.83174 0.84627 0.76592 0.90971 0.90969 0.95767 0.95767 0.77960 0.93270 0.83701 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.17 59.84 0.61 1.09 16 2 N -0.62 -4.26 3.27 -190.57 -0.62 -4.88 16 3 C 0.06 0.22 8.63 59.85 0.52 0.73 16 4 C 0.56 5.59 7.50 -12.24 -0.09 5.50 16 5 O -0.53 -7.16 16.59 5.35 0.09 -7.07 16 6 C -0.12 -1.07 5.50 -104.90 -0.58 -1.65 16 7 C -0.11 -0.78 7.51 -39.24 -0.29 -1.08 16 8 C -0.10 -0.76 9.53 -39.25 -0.37 -1.13 16 9 C -0.10 -1.09 5.88 -104.90 -0.62 -1.71 16 10 C 0.55 7.74 7.78 -12.24 -0.10 7.64 16 11 O -0.53 -9.57 16.34 5.34 0.09 -9.48 16 12 N -0.72 -9.31 5.51 -61.19 -0.34 -9.65 16 13 C 0.11 1.82 5.79 -4.04 -0.02 1.79 16 14 C 0.14 2.72 6.37 -4.04 -0.03 2.70 16 15 N -0.73 -18.17 5.60 -59.91 -0.34 -18.50 16 16 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.07 -0.73 9.58 -39.24 -0.38 -1.10 16 25 C -0.07 -0.66 9.57 -39.24 -0.38 -1.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.20 7.87 -51.93 -0.41 -0.21 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.14 7.13 -51.93 -0.37 -0.23 16 30 H 0.07 0.15 8.04 -51.93 -0.42 -0.27 16 31 H 0.09 0.35 5.11 -51.93 -0.27 0.08 16 32 H 0.15 0.63 4.41 -52.49 -0.23 0.40 16 33 H 0.14 0.74 6.39 -52.49 -0.34 0.41 16 34 H 0.40 3.90 6.50 -40.82 -0.27 3.63 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.39 10.23 7.67 -40.82 -0.31 9.91 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.15 1.54 7.64 -52.48 -0.40 1.14 16 42 H 0.14 1.29 7.82 -52.48 -0.41 0.88 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -35.87 354.13 -7.56 -43.42 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.50 Total: 6.67 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.97 Total: 4.41 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.57 Total: -60.26 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.18 Total: -16.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.87 -7.56 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148179461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.386 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds