Wall clock time and date at job start Fri Apr 10 2020 17:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99877 * 2 1 4 4 C 1.34777 * 120.00339 * 179.97438 * 2 1 3 5 5 O 1.21521 * 119.99867 * 354.56028 * 4 2 1 6 6 C 1.48030 * 119.99862 * 174.83802 * 4 2 1 7 7 C 1.39555 * 120.00233 * 335.45675 * 6 4 2 8 8 C 1.37824 * 119.99799 * 179.77254 * 7 6 4 9 9 C 1.39546 * 120.00149 * 0.50362 * 8 7 6 10 10 C 1.48033 * 120.00134 * 179.72348 * 9 8 7 11 11 O 1.21532 * 120.00538 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00147 * 0.02562 * 10 9 8 13 13 C 1.46497 * 120.00225 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47012 * 180.02562 * 13 12 10 15 15 N 1.46497 * 109.46986 * 180.02562 * 14 13 12 16 16 C 1.36944 * 119.99995 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00063 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00015 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47078 * 59.99564 * 20 18 16 22 22 H 1.48495 * 109.47384 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46886 * 300.00063 * 20 18 16 24 24 C 1.39558 * 120.00130 * 359.74806 * 9 8 7 25 25 C 1.37819 * 119.99796 * 0.02562 * 24 9 8 26 26 H 1.09000 * 109.47096 * 239.99861 * 1 2 3 27 27 H 1.08999 * 109.47446 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46920 * 120.00034 * 1 2 3 29 29 H 1.09000 * 109.47368 * 275.77013 * 3 2 1 30 30 H 1.09005 * 109.46877 * 35.76834 * 3 2 1 31 31 H 1.08994 * 109.47229 * 155.76530 * 3 2 1 32 32 H 1.08002 * 119.99924 * 359.97438 * 7 6 4 33 33 H 1.08002 * 119.99782 * 180.25490 * 8 7 6 34 34 H 0.97006 * 119.99478 * 359.97438 * 12 10 9 35 35 H 1.08994 * 109.47303 * 299.99979 * 13 12 10 36 36 H 1.08999 * 109.47035 * 60.00201 * 13 12 10 37 37 H 1.09007 * 109.46984 * 300.00162 * 14 13 12 38 38 H 1.08999 * 109.47139 * 60.00163 * 14 13 12 39 39 H 0.96996 * 120.00228 * 359.97438 * 15 14 13 40 40 H 0.97003 * 120.00107 * 180.02562 * 19 18 16 41 41 H 1.08005 * 120.00097 * 179.97438 * 24 9 8 42 42 H 1.08003 * 119.99813 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5355 -2.2172 0.1008 6 6 3.6147 -1.1697 -0.1148 7 6 4.2693 -0.0955 -0.7191 8 6 5.6436 -0.0957 -0.8222 9 6 6.3799 -1.1750 -0.3319 10 6 7.8557 -1.1781 -0.4482 11 8 8.4970 -2.1181 -0.0216 12 7 8.4883 -0.1383 -1.0272 13 6 9.9487 -0.1411 -1.1418 14 6 10.4086 1.1449 -1.8316 15 7 11.8691 1.1418 -1.9467 16 6 12.5118 2.1988 -2.5342 17 1 11.9421 3.0343 -2.9130 18 6 13.8957 2.1961 -2.6428 19 7 14.5901 1.1780 -2.1807 20 14 14.7724 3.6375 -3.4448 21 1 14.4741 4.8807 -2.6894 22 1 16.2370 3.3924 -3.4373 23 1 14.3028 3.7850 -4.8459 24 6 5.7250 -2.2516 0.2677 25 6 4.3510 -2.2493 0.3750 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8901 29 1 2.2897 1.6351 -1.0224 30 1 1.6569 2.0003 0.6007 31 1 3.1906 1.1149 0.4218 32 1 3.6991 0.7376 -1.1030 33 1 6.1505 0.7375 -1.2862 34 1 7.9764 0.6119 -1.3681 35 1 10.3911 -0.1976 -0.1473 36 1 10.2654 -1.0024 -1.7298 37 1 9.9662 1.2019 -2.8262 38 1 10.0920 2.0061 -1.2431 39 1 12.3809 0.3915 -1.6061 40 1 15.5572 1.1763 -2.2563 41 1 6.2949 -3.0871 0.6468 42 1 3.8442 -3.0827 0.8387 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148179461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:14 Heat of formation + Delta-G solvation = -33.618764 kcal Electronic energy + Delta-G solvation = -23447.138532 eV Core-core repulsion = 19813.446790 eV Total energy + Delta-G solvation = -3633.691742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75416 -40.88149 -38.97185 -37.33174 -36.82916 -35.59943 -33.42636 -32.69899 -32.15611 -29.54271 -28.85174 -27.66126 -25.87684 -24.71503 -23.69850 -23.00822 -21.86069 -20.91243 -19.42865 -18.90952 -18.28467 -17.66934 -17.10107 -16.81681 -16.70488 -16.49193 -16.07350 -15.58243 -15.47880 -15.30052 -15.11184 -14.93369 -14.83443 -14.39685 -14.25822 -13.78204 -13.60665 -13.35719 -13.31366 -13.06526 -13.02329 -12.69236 -12.61438 -12.52633 -12.11366 -11.96165 -11.85611 -11.31419 -11.04286 -10.96082 -10.36309 -10.11667 -10.01708 -9.73063 -9.04695 -7.94924 -5.26325 -0.65186 0.24397 1.31263 1.50102 1.53753 1.59833 1.88070 1.95662 2.01014 2.59121 2.75118 3.30846 3.39343 3.58938 3.71294 3.81478 4.01738 4.14819 4.15865 4.22785 4.24231 4.29345 4.42391 4.47682 4.57063 4.60456 4.72107 4.86723 4.90932 4.93466 4.99027 5.06309 5.14876 5.14908 5.20901 5.31136 5.42614 5.50632 5.65197 6.20162 6.25488 6.44069 6.96609 7.09337 7.31874 8.04266 8.26408 9.28435 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.002136 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.040328 B =13103.336750 C =14011.210938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.611 5.611 3 C 0.049 3.951 4 C 0.549 3.451 5 O -0.578 6.578 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.082 4.082 9 C -0.115 4.115 10 C 0.550 3.450 11 O -0.580 6.580 12 N -0.700 5.700 13 C 0.126 3.874 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.247 4.247 17 H 0.085 0.915 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.275 1.275 24 C -0.078 4.078 25 C -0.076 4.076 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.418 0.582 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.133 0.867 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.153 3.615 3.711 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.343 5.343 3 C -0.092 4.092 4 C 0.338 3.662 5 O -0.460 6.460 6 C -0.123 4.123 7 C -0.111 4.111 8 C -0.101 4.101 9 C -0.119 4.119 10 C 0.339 3.661 11 O -0.461 6.461 12 N -0.353 5.353 13 C 0.001 3.999 14 C 0.022 3.978 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.103 0.897 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.808 3.192 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.201 1.201 24 C -0.097 4.097 25 C -0.095 4.095 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.205 0.795 33 H 0.186 0.814 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.150 0.850 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -31.031 2.647 3.965 31.395 hybrid contribution 0.955 0.068 -0.199 0.977 sum -30.077 2.715 3.766 30.433 Atomic orbital electron populations 1.21812 0.77616 1.04554 1.01782 1.47788 1.08110 1.06491 1.71885 1.22830 0.98582 0.83761 1.04045 1.18646 0.87467 0.83723 0.76342 1.90760 1.70642 1.32953 1.51600 1.20126 0.92522 0.96988 1.02705 1.22331 0.94370 0.97975 0.96467 1.21642 0.94177 0.97249 0.97013 1.20071 0.91394 0.97666 1.02741 1.18751 0.88207 0.81900 0.77284 1.90776 1.68668 1.36532 1.50112 1.45590 1.07310 1.22280 1.60072 1.21219 0.79690 0.98553 1.00418 1.20868 0.84400 0.94568 0.97978 1.42430 1.01747 1.22861 1.72105 1.19623 0.90089 0.98204 1.29943 0.89676 1.25689 0.97429 1.00960 1.03052 1.69833 1.05944 1.32994 1.53362 0.85125 0.76738 0.78778 0.78560 1.20016 1.22557 1.20100 1.21224 0.94005 0.97845 0.96634 1.21195 0.92880 0.97689 0.97773 0.92991 0.86849 0.92609 0.89065 0.88663 0.89062 0.79496 0.81418 0.74289 0.92558 0.92683 0.94154 0.94011 0.79504 0.93982 0.84953 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.17 127.77 1.30 2.02 16 2 N -0.61 -6.83 3.27 -875.14 -2.87 -9.70 16 3 C 0.05 0.13 8.63 127.77 1.10 1.23 16 4 C 0.55 10.43 7.50 86.84 0.65 11.08 16 5 O -0.58 -15.94 16.59 -3.78 -0.06 -16.00 16 6 C -0.12 -2.01 5.50 -20.04 -0.11 -2.12 16 7 C -0.09 -0.97 7.51 22.49 0.17 -0.80 16 8 C -0.08 -1.01 9.53 22.49 0.21 -0.79 16 9 C -0.12 -2.38 5.88 -20.05 -0.12 -2.49 16 10 C 0.55 15.25 7.78 86.84 0.68 15.92 16 11 O -0.58 -21.60 16.34 -3.81 -0.06 -21.67 16 12 N -0.70 -17.02 5.51 -465.80 -2.56 -19.58 16 13 C 0.13 4.11 5.79 86.38 0.50 4.61 16 14 C 0.15 5.32 6.37 86.38 0.55 5.87 16 15 N -0.75 -36.95 5.60 -343.45 -1.92 -38.87 16 16 C -0.25 -13.31 9.99 84.03 0.84 -12.47 16 17 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 19 N -0.97 -59.30 13.06 21.65 0.28 -59.01 16 20 Si 0.98 44.88 29.55 68.60 2.03 46.91 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 C -0.08 -1.69 9.58 22.49 0.22 -1.47 16 25 C -0.08 -1.51 9.57 22.49 0.22 -1.30 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.15 7.87 -2.39 -0.02 0.13 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.09 -0.15 7.13 -2.39 -0.02 -0.17 16 30 H 0.09 -0.09 8.04 -2.38 -0.02 -0.11 16 31 H 0.09 0.28 5.11 -2.39 -0.01 0.27 16 32 H 0.19 0.53 4.41 -2.91 -0.01 0.52 16 33 H 0.17 0.94 6.39 -2.91 -0.02 0.92 16 34 H 0.42 6.70 6.50 -92.70 -0.60 6.09 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.37 20.13 7.67 -92.71 -0.71 19.42 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.13 3.10 7.64 -2.91 -0.02 3.08 16 42 H 0.14 2.71 7.82 -2.91 -0.02 2.69 16 Total: -1.00 -80.67 354.13 1.26 -79.41 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.25 Total: 23.21 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.67 Total: 15.30 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -7.07 Total: -127.16 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.13 Total: -37.67 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.67 1.26 -79.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148179461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.794 kcal (2) G-P(sol) polarization free energy of solvation -80.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds