Wall clock time and date at job start Fri Apr 10 2020 17:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99778 * 2 1 4 4 O 1.20826 * 119.99689 * 0.02562 * 3 2 1 5 5 C 1.50694 * 119.99944 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.49154 * 320.04853 * 5 3 2 7 7 C 1.53053 * 109.50533 * 80.10042 * 5 3 2 8 8 N 1.46959 * 109.36730 * 178.37565 * 7 5 3 9 9 C 1.39075 * 111.00285 * 176.80945 * 8 7 5 10 10 C 1.38749 * 119.65950 * 179.72703 * 9 8 7 11 11 C 1.40772 * 118.66733 * 179.75992 * 10 9 8 12 12 C 1.41552 * 120.99104 * 180.26026 * 11 10 9 13 13 H 1.08006 * 120.00046 * 331.09572 * 12 11 10 14 14 C 1.40024 * 119.99904 * 151.10275 * 12 11 10 15 15 N 1.30746 * 119.99853 * 161.62066 * 14 12 11 16 16 Si 1.86794 * 120.00222 * 341.61943 * 14 12 11 17 17 H 1.48503 * 109.47194 * 95.39553 * 16 14 12 18 18 H 1.48497 * 109.47549 * 215.39576 * 16 14 12 19 19 H 1.48505 * 109.47043 * 335.39860 * 16 14 12 20 20 C 1.41182 * 118.01758 * 0.50803 * 11 10 9 21 21 C 1.36561 * 119.14370 * 359.75100 * 20 11 10 22 22 N 1.32092 * 121.26807 * 359.97438 * 21 20 11 23 23 C 1.46952 * 110.87936 * 300.68389 * 8 7 5 24 24 C 1.53047 * 109.36994 * 59.31713 * 23 8 7 25 25 N 1.46958 * 109.48965 * 200.00122 * 5 3 2 26 26 C 1.46894 * 110.99848 * 56.82658 * 25 5 3 27 27 H 1.08998 * 109.47314 * 299.99169 * 1 2 3 28 28 H 1.08998 * 109.47657 * 60.00064 * 1 2 3 29 29 H 1.09006 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.48989 * 298.34791 * 7 5 3 31 31 H 1.08999 * 109.48744 * 58.38951 * 7 5 3 32 32 H 1.08004 * 120.65802 * 0.02562 * 10 9 8 33 33 H 0.97006 * 120.00003 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.43135 * 179.73233 * 20 11 10 35 35 H 1.08004 * 119.36375 * 179.97438 * 21 20 11 36 36 H 1.09005 * 109.48805 * 179.28458 * 23 8 7 37 37 H 1.09002 * 109.49104 * 299.32430 * 23 8 7 38 38 H 1.08998 * 109.49269 * 181.62870 * 24 23 8 39 39 H 1.09003 * 109.48954 * 61.56031 * 24 23 8 40 40 H 1.08995 * 109.47368 * 59.99912 * 26 25 5 41 41 H 1.09007 * 109.47289 * 299.99637 * 26 25 5 42 42 H 1.09004 * 109.46907 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9704 0.5075 0.6607 7 6 4.0901 1.0538 -1.4204 8 7 5.5551 1.1699 -1.4233 9 6 6.0737 0.9039 -2.6860 10 6 7.4442 0.9687 -2.8930 11 6 7.9469 0.6905 -4.1781 12 6 9.3367 0.7368 -4.4428 13 1 9.9734 1.3969 -3.8723 14 6 9.8860 -0.0729 -5.4444 15 7 11.0631 0.2077 -5.9396 16 14 8.9373 -1.5542 -6.0729 17 1 8.1844 -1.1771 -7.2962 18 1 9.8864 -2.6501 -6.3941 19 1 7.9867 -2.0128 -5.0283 20 6 7.0233 0.3690 -5.1963 21 6 5.6909 0.3351 -4.8991 22 7 5.2534 0.5963 -3.6804 23 6 5.9763 2.4957 -0.9495 24 6 5.4525 2.7169 0.4714 25 7 3.9875 2.6008 0.4743 26 6 3.4397 2.8817 1.8081 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8034 0.0595 -1.7630 31 1 3.6642 1.8046 -2.0859 32 1 8.1120 1.2233 -2.0832 33 1 11.4438 -0.3535 -6.6332 34 1 7.3660 0.1530 -6.1974 35 1 4.9811 0.0899 -5.6754 36 1 7.0649 2.5526 -0.9487 37 1 5.5725 3.2631 -1.6099 38 1 5.7392 3.7112 0.8141 39 1 5.8780 1.9659 1.1370 40 1 3.7950 2.1297 2.5126 41 1 2.3508 2.8552 1.7667 42 1 3.7666 3.8690 2.1345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155220945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:23 Heat of formation + Delta-G solvation = -43.433801 kcal Electronic energy + Delta-G solvation = -25330.379606 eV Core-core repulsion = 21696.262252 eV Total energy + Delta-G solvation = -3634.117354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05355 -41.05720 -39.52252 -37.63803 -36.58724 -35.61473 -33.34958 -32.69370 -31.37472 -29.18783 -28.37637 -27.91354 -25.63438 -25.06041 -23.69347 -22.76967 -22.17166 -20.87881 -19.66783 -18.78076 -18.15374 -17.65896 -17.61375 -16.90428 -16.72205 -16.38331 -16.12245 -16.06571 -15.77071 -15.20664 -15.07617 -14.90891 -14.66264 -14.35112 -14.28436 -13.83211 -13.43176 -13.22387 -13.01269 -12.96492 -12.91439 -12.81029 -12.67193 -12.41690 -12.22338 -12.06878 -11.79641 -11.73167 -11.42021 -11.29370 -10.67300 -10.18052 -10.00971 -9.49452 -8.99490 -8.90964 -6.71630 0.63320 0.73273 0.97269 1.27199 1.41378 1.48648 1.49745 2.09772 2.47828 2.70931 2.83290 3.43371 3.58703 3.69738 3.80112 3.93917 3.96074 4.21399 4.27317 4.28509 4.32353 4.44202 4.49512 4.52756 4.58850 4.65490 4.68884 4.69598 4.77736 4.83758 4.89153 4.94934 4.96858 5.24395 5.25987 5.31631 5.54116 5.65673 5.77446 5.84596 5.89629 6.16261 6.40305 6.57005 6.64847 6.70391 7.49920 8.07644 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.003646 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.923253 B = 7677.102407 C = 8546.282124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.475 3.525 4 O -0.510 6.510 5 C 0.098 3.902 6 H 0.095 0.905 7 C 0.097 3.903 8 N -0.476 5.476 9 C 0.316 3.684 10 C -0.280 4.280 11 C 0.111 3.889 12 C -0.471 4.471 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.831 5.831 16 Si 0.967 3.033 17 H -0.251 1.251 18 H -0.274 1.274 19 H -0.261 1.261 20 C -0.309 4.309 21 C 0.136 3.864 22 N -0.605 5.605 23 C 0.058 3.942 24 C 0.070 3.930 25 N -0.543 5.543 26 C 0.019 3.981 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.115 0.885 33 H 0.299 0.701 34 H 0.111 0.889 35 H 0.161 0.839 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 -0.556 12.175 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.397 6.397 5 C -0.012 4.012 6 H 0.113 0.887 7 C -0.031 4.031 8 N -0.194 5.194 9 C 0.089 3.911 10 C -0.305 4.305 11 C 0.103 3.897 12 C -0.501 4.501 13 H 0.084 0.916 14 C -0.162 4.162 15 N -0.456 5.456 16 Si 0.790 3.210 17 H -0.176 1.176 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.332 4.332 21 C -0.017 4.017 22 N -0.325 5.325 23 C -0.068 4.068 24 C -0.057 4.057 25 N -0.270 5.270 26 C -0.128 4.128 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.178 0.822 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.719 -0.277 12.263 19.939 hybrid contribution 0.956 -0.372 -0.731 1.260 sum -14.762 -0.648 11.532 18.744 Atomic orbital electron populations 1.23591 0.74268 1.05871 1.02697 1.86518 1.25415 1.32403 1.83535 1.23366 0.91417 0.81552 0.71976 1.90630 1.67158 1.36910 1.44998 1.21251 0.87507 0.93515 0.98894 0.88707 1.21595 0.86340 1.02555 0.92589 1.59382 1.10315 1.29413 1.20312 1.19480 0.89970 0.93912 0.87745 1.21370 0.93701 1.18330 0.97080 1.17942 0.93328 0.87213 0.91210 1.19488 0.92494 1.22129 1.16018 0.91640 1.26813 0.95574 1.00696 0.93110 1.69663 1.17695 1.36796 1.21449 0.85469 0.78387 0.77183 0.79979 1.17610 1.20035 1.18477 1.21742 0.95001 1.16936 0.99521 1.21952 0.93636 0.93176 0.92942 1.67395 1.38938 1.25279 1.00861 1.22426 1.01582 0.86353 0.96416 1.22265 0.84859 1.03812 0.94794 1.61906 1.11276 1.25959 1.27860 1.22551 1.00810 1.02577 0.86895 0.91285 0.92156 0.84960 0.89360 0.94323 0.86662 0.89044 0.87098 0.82225 0.88596 0.94487 0.86541 0.92155 0.94054 0.91655 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.36 -8.47 10.57 -51.46 -0.54 -9.01 16 3 C 0.48 12.74 6.40 71.23 0.46 13.19 16 4 O -0.51 -15.61 14.49 21.96 0.32 -15.29 16 5 C 0.10 2.61 2.47 44.17 0.11 2.72 16 6 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 7 C 0.10 3.17 4.05 86.31 0.35 3.52 16 8 N -0.48 -16.68 4.73 -701.58 -3.32 -20.00 16 9 C 0.32 13.46 6.41 132.91 0.85 14.31 16 10 C -0.28 -12.94 9.01 23.01 0.21 -12.73 16 11 C 0.11 5.60 5.13 -21.12 -0.11 5.49 16 12 C -0.47 -25.44 9.63 23.52 0.23 -25.22 16 13 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 14 C 0.06 2.87 5.42 85.29 0.46 3.34 16 15 N -0.83 -43.33 13.92 21.84 0.30 -43.03 16 16 Si 0.97 41.14 24.54 68.60 1.68 42.82 16 17 H -0.25 -9.95 6.70 99.48 0.67 -9.28 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.26 -11.67 6.85 99.48 0.68 -10.99 16 20 C -0.31 -14.34 7.24 22.60 0.16 -14.18 16 21 C 0.14 5.75 11.10 84.26 0.94 6.68 16 22 N -0.60 -26.15 8.68 -194.47 -1.69 -27.84 16 23 C 0.06 1.74 5.36 86.31 0.46 2.20 16 24 C 0.07 1.55 5.62 86.31 0.49 2.04 16 25 N -0.54 -13.45 4.52 -900.98 -4.07 -17.53 16 26 C 0.02 0.37 9.14 127.69 1.17 1.53 16 27 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 29 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.09 3.01 7.82 -2.39 -0.02 2.99 16 31 H 0.04 1.42 8.05 -2.39 -0.02 1.40 16 32 H 0.12 5.08 7.16 -2.91 -0.02 5.06 16 33 H 0.30 13.87 8.29 -92.70 -0.77 13.10 16 34 H 0.11 5.00 4.76 -2.91 -0.01 4.98 16 35 H 0.16 5.54 8.06 -2.91 -0.02 5.52 16 36 H 0.10 2.81 6.77 -2.38 -0.02 2.80 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.12 2.02 8.13 -2.39 -0.02 2.00 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 1.47 5.85 -2.38 -0.01 1.45 16 42 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 Total: -1.00 -63.33 337.72 0.61 -62.72 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.96 Total: 22.60 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.97 Total: 4.56 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -8.78 Total: -108.40 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.23 Total: -24.30 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.68 Total: 42.82 kcal Total: -63.33 0.61 -62.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155220945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.285 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds