Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 116.99875 * 2 1 4 4 O 1.20831 * 120.00269 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00082 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.48677 * 39.96002 * 5 3 2 7 7 C 1.53049 * 109.49303 * 279.89271 * 5 3 2 8 8 N 1.46947 * 109.36566 * 181.63176 * 7 5 3 9 9 C 1.39081 * 110.99831 * 183.18659 * 8 7 5 10 10 C 1.38746 * 119.66022 * 292.24230 * 9 8 7 11 11 C 1.40777 * 118.67179 * 179.97438 * 10 9 8 12 12 C 1.41551 * 120.99234 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99864 * 24.82467 * 12 11 10 14 14 C 1.40025 * 119.99960 * 204.82098 * 12 11 10 15 15 N 1.30750 * 119.99829 * 199.72205 * 14 12 11 16 16 Si 1.86798 * 120.00075 * 19.71679 * 14 12 11 17 17 H 1.48501 * 109.47145 * 264.48076 * 16 14 12 18 18 H 1.48500 * 109.46995 * 144.48183 * 16 14 12 19 19 H 1.48504 * 109.46921 * 24.48498 * 16 14 12 20 20 C 1.41185 * 118.01227 * 0.25789 * 11 10 9 21 21 C 1.36561 * 119.14765 * 359.46760 * 20 11 10 22 22 N 1.32093 * 121.26289 * 0.54714 * 21 20 11 23 23 C 1.46956 * 110.88324 * 59.32210 * 8 7 5 24 24 C 1.53050 * 109.35959 * 300.67697 * 23 8 7 25 25 N 1.46948 * 109.36741 * 58.40217 * 24 23 8 26 26 C 1.46898 * 111.00496 * 176.81051 * 25 24 23 27 27 H 1.08996 * 109.47269 * 60.00085 * 1 2 3 28 28 H 1.09005 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47397 * 299.99733 * 1 2 3 30 30 H 1.08997 * 109.48853 * 61.65669 * 7 5 3 31 31 H 1.09001 * 109.48337 * 301.59773 * 7 5 3 32 32 H 1.08006 * 120.66015 * 0.02694 * 10 9 8 33 33 H 0.96996 * 119.99795 * 354.90250 * 15 14 12 34 34 H 1.08001 * 120.42255 * 179.74851 * 20 11 10 35 35 H 1.07997 * 119.36648 * 180.27638 * 21 20 11 36 36 H 1.08998 * 109.48929 * 60.64401 * 23 8 7 37 37 H 1.08998 * 109.48992 * 180.71554 * 23 8 7 38 38 H 1.09007 * 109.49004 * 178.36968 * 24 23 8 39 39 H 1.09000 * 109.49117 * 298.40979 * 24 23 8 40 40 H 1.09002 * 109.47262 * 63.95101 * 26 25 24 41 41 H 1.08991 * 109.47560 * 183.95657 * 26 25 24 42 42 H 1.09004 * 109.47163 * 303.95639 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9709 0.5073 -0.6591 7 6 4.0887 1.0544 1.4222 8 7 5.5535 1.1707 1.4265 9 6 6.0708 0.9053 2.6899 10 6 5.8175 1.7834 3.7339 11 6 6.3508 1.4942 5.0042 12 6 6.1234 2.3563 6.1037 13 1 5.2548 2.9980 6.1161 14 6 7.0247 2.3772 7.1751 15 7 6.6511 2.8525 8.3344 16 14 8.7606 1.7257 6.9482 17 1 8.8219 0.3124 7.4000 18 1 9.7050 2.5434 7.7511 19 1 9.1348 1.8034 5.5132 20 6 7.1243 0.3218 5.1474 21 6 7.3154 -0.4856 4.0628 22 7 6.8000 -0.1841 2.8845 23 6 5.9752 2.4963 0.9526 24 6 5.4528 2.7167 -0.4690 25 7 3.9879 2.6005 -0.4734 26 6 3.4415 2.8807 -1.8079 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8017 0.0603 1.7649 31 1 3.6623 1.8057 2.0868 32 1 5.2222 2.6706 3.5752 33 1 5.7755 3.2581 8.4329 34 1 7.5555 0.0645 6.1036 35 1 7.9027 -1.3856 4.1694 36 1 5.5702 3.2640 1.6120 37 1 7.0637 2.5534 0.9529 38 1 5.7397 3.7109 -0.8118 39 1 5.8795 1.9657 -1.1338 40 1 3.7954 2.1269 -2.5111 41 1 2.3526 2.8568 -1.7670 42 1 3.7712 3.8666 -2.1358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155220946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = -25.856933 kcal Electronic energy + Delta-G solvation = -25436.119055 eV Core-core repulsion = 21802.763891 eV Total energy + Delta-G solvation = -3633.355164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94055 -39.57554 -38.18208 -36.53979 -35.21985 -34.03905 -31.61491 -31.27873 -29.87432 -28.09097 -27.24773 -25.64640 -24.47819 -23.97341 -22.34391 -21.25729 -20.64114 -19.67695 -18.46231 -17.73910 -16.96381 -16.57526 -15.91894 -15.53871 -15.27324 -15.16313 -14.87318 -14.84873 -14.31798 -13.91545 -13.49445 -13.42548 -13.15670 -13.02588 -12.95868 -12.36499 -12.30764 -12.18164 -11.89976 -11.88239 -11.57294 -11.29020 -11.08638 -10.92893 -10.86723 -10.73626 -10.30998 -10.23739 -9.62882 -9.38980 -8.84030 -8.50517 -8.37754 -7.86817 -7.76355 -7.42840 -4.86014 2.02585 2.27708 2.45240 2.60560 3.10690 3.28447 3.44355 3.72067 3.88361 4.00778 4.43311 4.63699 4.78520 4.92913 4.96408 4.99491 5.03397 5.20664 5.26708 5.33510 5.37210 5.45253 5.54577 5.61566 5.72945 5.79459 5.91313 5.96508 6.07521 6.21571 6.27462 6.43634 6.48056 6.60114 6.70331 6.83947 7.04239 7.19003 7.31185 7.41476 7.46409 7.67085 7.85309 8.18112 8.32577 8.53652 9.35999 9.80767 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003785 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.335575 B = 7395.060775 C = 7698.268681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.487 6.487 5 C 0.100 3.900 6 H 0.086 0.914 7 C 0.083 3.917 8 N -0.490 5.490 9 C 0.308 3.692 10 C -0.289 4.289 11 C 0.119 3.881 12 C -0.502 4.502 13 H 0.078 0.922 14 C 0.044 3.956 15 N -0.801 5.801 16 Si 1.077 2.923 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.261 1.261 20 C -0.290 4.290 21 C 0.127 3.873 22 N -0.557 5.557 23 C 0.063 3.937 24 C 0.063 3.937 25 N -0.526 5.526 26 C 0.015 3.985 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.289 0.711 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 -2.543 -15.034 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.372 6.372 5 C -0.010 4.010 6 H 0.104 0.896 7 C -0.045 4.045 8 N -0.213 5.213 9 C 0.083 3.917 10 C -0.315 4.315 11 C 0.111 3.889 12 C -0.532 4.532 13 H 0.097 0.903 14 C -0.177 4.177 15 N -0.423 5.423 16 Si 0.903 3.097 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.186 1.186 20 C -0.312 4.312 21 C -0.026 4.026 22 N -0.272 5.272 23 C -0.065 4.065 24 C -0.064 4.064 25 N -0.252 5.252 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.096 0.904 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.429 -3.058 -14.878 15.822 hybrid contribution -2.068 1.051 0.104 2.322 sum -6.496 -2.007 -14.774 16.263 Atomic orbital electron populations 1.23272 0.76243 1.03744 1.02538 1.86530 1.23458 1.33322 1.84065 1.23477 0.91534 0.81455 0.72646 1.90649 1.66711 1.36123 1.43717 1.21249 0.87050 0.92737 0.99997 0.89593 1.21940 0.87528 1.02695 0.92325 1.58690 1.07917 1.29336 1.25313 1.18849 0.94523 0.91460 0.86882 1.22149 1.12351 1.02930 0.94057 1.17818 0.88395 0.90815 0.91897 1.20719 1.09484 1.20747 1.02290 0.90349 1.27404 1.06199 0.93640 0.90494 1.70509 1.23601 1.25329 1.22857 0.83529 0.72335 0.76211 0.77630 1.20102 1.21615 1.18599 1.21702 1.10891 0.98924 0.99668 1.21566 0.95762 0.97448 0.87854 1.66982 1.15580 1.19986 1.24684 1.22218 1.00685 0.88978 0.94587 1.22252 0.85251 1.01717 0.97219 1.61895 1.10874 1.26326 1.26125 1.22551 1.01661 1.01125 0.87900 0.91998 0.88003 0.91743 0.89179 0.92785 0.87883 0.89954 0.87255 0.85224 0.92880 0.89638 0.89336 0.93365 0.95601 0.90414 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.53 10.57 -39.24 -0.41 -4.94 16 3 C 0.47 6.68 6.40 36.01 0.23 6.91 16 4 O -0.49 -7.85 14.49 -18.75 -0.27 -8.12 16 5 C 0.10 1.42 2.47 -68.81 -0.17 1.25 16 6 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 7 C 0.08 1.40 4.65 -3.77 -0.02 1.38 16 8 N -0.49 -9.00 4.76 -173.11 -0.82 -9.82 16 9 C 0.31 6.73 5.73 -154.98 -0.89 5.84 16 10 C -0.29 -6.76 8.46 -38.43 -0.33 -7.09 16 11 C 0.12 2.99 5.24 -106.56 -0.56 2.44 16 12 C -0.50 -13.17 9.50 -37.65 -0.36 -13.53 16 13 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 14 C 0.04 1.13 5.43 -17.34 -0.09 1.04 16 15 N -0.80 -20.79 13.65 55.55 0.76 -20.03 16 16 Si 1.08 23.44 24.83 -169.99 -4.22 19.22 16 17 H -0.27 -5.62 6.66 56.52 0.38 -5.24 16 18 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.26 -5.71 6.77 56.52 0.38 -5.33 16 20 C -0.29 -6.80 7.24 -39.07 -0.28 -7.09 16 21 C 0.13 2.78 11.10 -18.04 -0.20 2.58 16 22 N -0.56 -12.64 10.37 -12.82 -0.13 -12.77 16 23 C 0.06 1.01 5.25 -3.77 -0.02 0.99 16 24 C 0.06 0.80 5.62 -3.77 -0.02 0.78 16 25 N -0.53 -7.21 4.52 -236.13 -1.07 -8.28 16 26 C 0.02 0.17 9.14 60.06 0.55 0.72 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 31 H 0.05 0.99 7.64 -51.93 -0.40 0.59 16 32 H 0.10 2.36 7.04 -52.48 -0.37 2.00 16 33 H 0.29 7.29 8.73 -40.82 -0.36 6.93 16 34 H 0.11 2.48 4.24 -52.49 -0.22 2.26 16 35 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.05 0.91 7.02 -51.93 -0.36 0.54 16 37 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.09 0.95 8.13 -51.92 -0.42 0.52 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.96 5.85 -51.93 -0.30 0.66 16 42 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -29.43 338.48 -8.08 -37.52 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.92 Total: 4.52 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.09 Total: -2.39 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -1.27 Total: -50.90 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.69 Total: -13.07 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.22 Total: 19.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.43 -8.08 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155220946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.659 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds