Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 116.99875 * 2 1 4 4 O 1.20831 * 120.00269 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00082 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.48677 * 39.96002 * 5 3 2 7 7 C 1.53049 * 109.49303 * 279.89271 * 5 3 2 8 8 N 1.46947 * 109.36566 * 181.63176 * 7 5 3 9 9 C 1.39081 * 110.99831 * 183.18659 * 8 7 5 10 10 C 1.38746 * 119.66022 * 292.24230 * 9 8 7 11 11 C 1.40777 * 118.67179 * 179.97438 * 10 9 8 12 12 C 1.41551 * 120.99234 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99864 * 24.82467 * 12 11 10 14 14 C 1.40025 * 119.99960 * 204.82098 * 12 11 10 15 15 N 1.30750 * 119.99829 * 199.72205 * 14 12 11 16 16 Si 1.86798 * 120.00075 * 19.71679 * 14 12 11 17 17 H 1.48501 * 109.47145 * 264.48076 * 16 14 12 18 18 H 1.48500 * 109.46995 * 144.48183 * 16 14 12 19 19 H 1.48504 * 109.46921 * 24.48498 * 16 14 12 20 20 C 1.41185 * 118.01227 * 0.25789 * 11 10 9 21 21 C 1.36561 * 119.14765 * 359.46760 * 20 11 10 22 22 N 1.32093 * 121.26289 * 0.54714 * 21 20 11 23 23 C 1.46956 * 110.88324 * 59.32210 * 8 7 5 24 24 C 1.53050 * 109.35959 * 300.67697 * 23 8 7 25 25 N 1.46948 * 109.36741 * 58.40217 * 24 23 8 26 26 C 1.46898 * 111.00496 * 176.81051 * 25 24 23 27 27 H 1.08996 * 109.47269 * 60.00085 * 1 2 3 28 28 H 1.09005 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47397 * 299.99733 * 1 2 3 30 30 H 1.08997 * 109.48853 * 61.65669 * 7 5 3 31 31 H 1.09001 * 109.48337 * 301.59773 * 7 5 3 32 32 H 1.08006 * 120.66015 * 0.02694 * 10 9 8 33 33 H 0.96996 * 119.99795 * 354.90250 * 15 14 12 34 34 H 1.08001 * 120.42255 * 179.74851 * 20 11 10 35 35 H 1.07997 * 119.36648 * 180.27638 * 21 20 11 36 36 H 1.08998 * 109.48929 * 60.64401 * 23 8 7 37 37 H 1.08998 * 109.48992 * 180.71554 * 23 8 7 38 38 H 1.09007 * 109.49004 * 178.36968 * 24 23 8 39 39 H 1.09000 * 109.49117 * 298.40979 * 24 23 8 40 40 H 1.09002 * 109.47262 * 63.95101 * 26 25 24 41 41 H 1.08991 * 109.47560 * 183.95657 * 26 25 24 42 42 H 1.09004 * 109.47163 * 303.95639 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9709 0.5073 -0.6591 7 6 4.0887 1.0544 1.4222 8 7 5.5535 1.1707 1.4265 9 6 6.0708 0.9053 2.6899 10 6 5.8175 1.7834 3.7339 11 6 6.3508 1.4942 5.0042 12 6 6.1234 2.3563 6.1037 13 1 5.2548 2.9980 6.1161 14 6 7.0247 2.3772 7.1751 15 7 6.6511 2.8525 8.3344 16 14 8.7606 1.7257 6.9482 17 1 8.8219 0.3124 7.4000 18 1 9.7050 2.5434 7.7511 19 1 9.1348 1.8034 5.5132 20 6 7.1243 0.3218 5.1474 21 6 7.3154 -0.4856 4.0628 22 7 6.8000 -0.1841 2.8845 23 6 5.9752 2.4963 0.9526 24 6 5.4528 2.7167 -0.4690 25 7 3.9879 2.6005 -0.4734 26 6 3.4415 2.8807 -1.8079 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8017 0.0603 1.7649 31 1 3.6623 1.8057 2.0868 32 1 5.2222 2.6706 3.5752 33 1 5.7755 3.2581 8.4329 34 1 7.5555 0.0645 6.1036 35 1 7.9027 -1.3856 4.1694 36 1 5.5702 3.2640 1.6120 37 1 7.0637 2.5534 0.9529 38 1 5.7397 3.7109 -0.8118 39 1 5.8795 1.9657 -1.1338 40 1 3.7954 2.1269 -2.5111 41 1 2.3526 2.8568 -1.7670 42 1 3.7712 3.8666 -2.1358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155220946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = -46.293513 kcal Electronic energy + Delta-G solvation = -25437.005251 eV Core-core repulsion = 21802.763891 eV Total energy + Delta-G solvation = -3634.241360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09133 -41.08176 -39.58714 -37.68600 -36.63094 -35.83583 -33.17107 -32.79301 -31.37565 -29.16327 -28.38442 -27.56339 -25.63650 -25.21735 -23.81587 -22.79372 -22.23627 -20.89340 -20.22960 -18.90703 -18.19769 -17.66709 -17.39631 -17.22859 -16.91157 -16.28908 -16.17292 -16.11698 -15.65484 -15.27331 -15.04979 -14.86128 -14.60663 -14.45343 -14.17594 -13.89285 -13.79102 -13.26236 -13.10758 -13.01667 -12.89183 -12.70321 -12.62828 -12.30283 -12.10777 -12.02765 -11.83793 -11.49639 -11.44787 -11.21435 -10.52418 -10.27636 -9.65152 -9.60332 -9.50028 -9.24880 -6.87317 0.45617 0.72038 0.93513 1.35235 1.45570 1.55219 1.74863 2.11443 2.46991 2.56878 2.78354 3.34803 3.50970 3.69096 3.81222 3.91005 4.07528 4.15453 4.24468 4.25496 4.28445 4.32929 4.43330 4.45933 4.55031 4.57867 4.61037 4.65692 4.67163 4.73178 4.84573 4.92995 4.96472 5.20099 5.21914 5.30068 5.52680 5.62682 5.64943 5.82716 5.88650 6.01054 6.19738 6.48167 6.59979 6.60358 7.54793 7.82376 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003785 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.335575 B = 7395.060775 C = 7698.268681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.510 6.510 5 C 0.107 3.893 6 H 0.101 0.899 7 C 0.088 3.912 8 N -0.488 5.488 9 C 0.317 3.683 10 C -0.302 4.302 11 C 0.104 3.896 12 C -0.535 4.535 13 H 0.048 0.952 14 C 0.017 3.983 15 N -0.822 5.822 16 Si 1.107 2.893 17 H -0.247 1.247 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.298 4.298 21 C 0.131 3.869 22 N -0.559 5.559 23 C 0.060 3.940 24 C 0.073 3.927 25 N -0.545 5.545 26 C 0.019 3.981 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.281 0.719 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.034 0.966 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 -4.220 -17.331 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.397 6.397 5 C -0.003 4.003 6 H 0.119 0.881 7 C -0.040 4.040 8 N -0.211 5.211 9 C 0.091 3.909 10 C -0.328 4.328 11 C 0.096 3.904 12 C -0.565 4.565 13 H 0.066 0.934 14 C -0.200 4.200 15 N -0.445 5.445 16 Si 0.927 3.073 17 H -0.172 1.172 18 H -0.205 1.205 19 H -0.188 1.188 20 C -0.320 4.320 21 C -0.022 4.022 22 N -0.275 5.275 23 C -0.067 4.067 24 C -0.054 4.054 25 N -0.272 5.272 26 C -0.128 4.128 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.190 0.810 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.449 -4.740 -17.181 18.153 hybrid contribution -2.503 1.532 0.681 3.012 sum -5.952 -3.208 -16.500 17.831 Atomic orbital electron populations 1.23602 0.74260 1.05949 1.02672 1.86515 1.25411 1.32329 1.83521 1.23449 0.91528 0.81583 0.72069 1.90640 1.67203 1.36956 1.44901 1.21118 0.87160 0.93784 0.98242 0.88116 1.21856 0.86542 1.01607 0.94042 1.58887 1.08602 1.30706 1.22896 1.19129 0.93394 0.90549 0.87859 1.22216 1.12735 1.03418 0.94415 1.18044 0.89051 0.91350 0.91963 1.20688 1.09673 1.22057 1.04129 0.93413 1.28490 1.08592 0.93178 0.89740 1.70573 1.23444 1.27008 1.23427 0.83191 0.68974 0.77538 0.77613 1.17230 1.20497 1.18821 1.21879 1.10780 0.98482 1.00879 1.22210 0.94960 0.98192 0.86850 1.67159 1.15363 1.19820 1.25136 1.22323 1.00860 0.87109 0.96408 1.22227 0.84710 1.03632 0.94815 1.61875 1.11475 1.25943 1.27937 1.22546 1.00761 1.02633 0.86823 0.91155 0.84809 0.92383 0.89681 0.95168 0.88752 0.90775 0.86281 0.81001 0.94789 0.89497 0.86777 0.91997 0.93816 0.91747 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.66 10.57 -51.37 -0.54 -9.21 16 3 C 0.47 13.04 6.40 71.24 0.46 13.49 16 4 O -0.51 -16.23 14.49 21.95 0.32 -15.91 16 5 C 0.11 2.90 2.47 44.17 0.11 3.01 16 6 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 7 C 0.09 2.93 4.65 86.31 0.40 3.33 16 8 N -0.49 -17.49 4.76 -701.61 -3.34 -20.83 16 9 C 0.32 13.66 5.73 132.90 0.76 14.42 16 10 C -0.30 -14.47 8.46 23.01 0.19 -14.27 16 11 C 0.10 5.33 5.24 -21.12 -0.11 5.22 16 12 C -0.53 -29.33 9.50 23.52 0.22 -29.10 16 13 H 0.05 2.80 8.06 -2.91 -0.02 2.78 16 14 C 0.02 0.87 5.43 85.29 0.46 1.33 16 15 N -0.82 -43.90 13.65 21.84 0.30 -43.61 16 16 Si 1.11 46.33 24.83 68.60 1.70 48.03 16 17 H -0.25 -9.26 6.66 99.48 0.66 -8.60 16 18 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.26 -11.04 6.77 99.48 0.67 -10.36 16 20 C -0.30 -13.62 7.24 22.60 0.16 -13.46 16 21 C 0.13 5.38 11.10 84.26 0.94 6.32 16 22 N -0.56 -24.24 10.37 -194.47 -2.02 -26.26 16 23 C 0.06 1.87 5.25 86.31 0.45 2.32 16 24 C 0.07 1.68 5.62 86.31 0.49 2.17 16 25 N -0.55 -13.97 4.52 -900.99 -4.07 -18.04 16 26 C 0.02 0.39 9.14 127.69 1.17 1.56 16 27 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 28 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.08 2.88 8.13 -2.39 -0.02 2.86 16 31 H 0.03 1.15 7.64 -2.39 -0.02 1.13 16 32 H 0.09 4.58 7.04 -2.91 -0.02 4.56 16 33 H 0.28 14.94 8.73 -92.71 -0.81 14.13 16 34 H 0.12 5.17 4.24 -2.91 -0.01 5.15 16 35 H 0.17 5.56 8.06 -2.91 -0.02 5.54 16 36 H 0.03 1.18 7.02 -2.39 -0.02 1.16 16 37 H 0.09 2.64 8.13 -2.39 -0.02 2.63 16 38 H 0.11 2.07 8.13 -2.38 -0.02 2.05 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.49 5.85 -2.39 -0.01 1.47 16 42 H 0.09 1.52 8.13 -2.38 -0.02 1.50 16 Total: -1.00 -64.56 338.48 0.16 -64.40 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.91 Total: 23.42 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.90 Total: -2.00 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -9.13 Total: -108.74 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.22 Total: -25.12 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.70 Total: 48.03 kcal Total: -64.56 0.16 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155220946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.109 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds