Wall clock time and date at job start Fri Apr 10 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99852 * 2 1 4 4 H 1.08002 * 120.00071 * 203.33674 * 3 2 1 5 5 C 1.38949 * 119.99754 * 23.32763 * 3 2 1 6 6 N 1.31405 * 120.00342 * 11.46344 * 5 3 2 7 7 Si 1.86806 * 119.99904 * 191.45716 * 5 3 2 8 8 H 1.48503 * 109.46940 * 84.94637 * 7 5 3 9 9 H 1.48502 * 109.47213 * 204.94795 * 7 5 3 10 10 H 1.48497 * 109.46937 * 324.94973 * 7 5 3 11 11 C 1.34773 * 120.00409 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00091 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99719 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.47044 * 40.01096 * 13 11 2 15 15 C 1.52995 * 109.47689 * 280.00449 * 13 11 2 16 16 C 1.50701 * 109.47395 * 175.00039 * 15 13 11 17 17 C 1.38235 * 119.99746 * 269.72868 * 16 15 13 18 18 C 1.38233 * 119.99927 * 179.76897 * 17 16 15 19 19 C 1.38242 * 119.99494 * 0.50146 * 18 17 16 20 20 C 1.38233 * 120.00230 * 359.75190 * 19 18 17 21 21 C 1.38231 * 120.00147 * 359.97438 * 20 19 18 22 22 N 1.46502 * 109.46883 * 160.00351 * 13 11 2 23 23 C 1.34774 * 119.99945 * 60.00214 * 22 13 11 24 24 O 1.21278 * 120.00138 * 0.02562 * 23 22 13 25 25 C 1.50707 * 119.99833 * 179.97438 * 23 22 13 26 26 N 1.46901 * 109.46765 * 180.02562 * 25 23 22 27 27 H 1.09000 * 109.47328 * 271.24285 * 1 2 3 28 28 H 1.08999 * 109.47181 * 31.24556 * 1 2 3 29 29 H 1.09007 * 109.46886 * 151.24435 * 1 2 3 30 30 H 0.97005 * 120.00356 * 179.97438 * 6 5 3 31 31 H 1.09006 * 109.47197 * 54.99839 * 15 13 11 32 32 H 1.09000 * 109.47164 * 295.00548 * 15 13 11 33 33 H 1.07994 * 120.00243 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.00473 * 180.23101 * 18 17 16 35 35 H 1.08006 * 119.99897 * 179.72464 * 19 18 17 36 36 H 1.08006 * 119.99897 * 179.97438 * 20 19 18 37 37 H 1.07995 * 120.00338 * 179.97438 * 21 20 19 38 38 H 0.97003 * 120.00154 * 239.99859 * 22 13 11 39 39 H 1.08999 * 109.47376 * 299.99960 * 25 23 22 40 40 H 1.08999 * 109.46959 * 60.00026 * 25 23 22 41 41 H 1.00896 * 111.00321 * 56.04921 * 26 25 23 42 42 H 1.00901 * 110.99762 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1642 1.2256 -0.3705 5 6 1.5408 2.3414 0.4765 6 7 0.4037 2.2620 1.1303 7 14 2.3378 4.0061 0.1878 8 1 1.9429 4.5188 -1.1488 9 1 1.8891 4.9581 1.2355 10 1 3.8148 3.8647 0.2472 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 1 0.5219 -2.3932 -0.6609 15 6 0.9139 -2.7891 1.4201 16 6 0.0571 -4.0287 1.4003 17 6 -1.3098 -3.9213 1.2244 18 6 -2.0951 -5.0586 1.2015 19 6 -1.5148 -6.3026 1.3649 20 6 -0.1485 -6.4096 1.5460 21 6 0.6375 -5.2727 1.5632 22 7 2.2652 -3.5440 -0.4734 23 6 3.4030 -3.8249 0.1922 24 8 3.6983 -3.1907 1.1829 25 6 4.3077 -4.9277 -0.2940 26 7 5.4714 -5.0346 0.5962 27 1 -0.3634 0.0223 1.0274 28 1 -0.3633 0.8786 -0.5330 29 1 -0.3633 -0.9010 -0.4944 30 1 -0.0217 3.0676 1.4633 31 1 0.3323 -1.9514 1.8052 32 1 1.7793 -2.9557 2.0615 33 1 -1.7637 -2.9491 1.1016 34 1 -3.1626 -4.9751 1.0604 35 1 -2.1289 -7.1910 1.3514 36 1 0.3048 -7.3815 1.6740 37 1 1.7048 -5.3562 1.7051 38 1 2.0289 -4.0515 -1.2656 39 1 3.7626 -5.8716 -0.2937 40 1 4.6435 -4.7025 -1.3062 41 1 5.1832 -5.1794 1.5522 42 1 6.0940 -5.7676 0.2910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:36 Heat of formation + Delta-G solvation = -22.893005 kcal Electronic energy + Delta-G solvation = -25915.434833 eV Core-core repulsion = 22282.208194 eV Total energy + Delta-G solvation = -3633.226638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.08604 -38.79538 -37.87053 -34.92950 -34.34378 -33.68839 -32.25530 -31.45774 -30.81786 -28.87947 -26.25431 -25.80996 -24.80460 -23.19928 -22.46476 -21.05969 -20.20611 -18.57930 -17.60206 -16.76082 -16.66054 -15.85384 -15.70508 -15.52593 -14.94276 -14.81963 -14.64314 -14.16873 -13.92542 -13.82568 -13.49403 -13.35793 -13.08192 -12.90899 -12.70289 -12.20623 -12.00359 -11.94896 -11.53410 -11.38274 -11.13229 -11.06788 -10.87984 -10.77297 -10.70478 -10.29579 -10.17419 -9.23469 -9.01679 -8.93498 -8.85645 -8.64711 -8.55677 -7.84346 -7.56185 -6.22485 -3.78663 1.42920 1.45931 3.19434 3.25772 3.30272 3.36504 3.54300 3.80363 4.05409 4.23377 4.69015 4.81945 4.92907 4.99239 5.05821 5.15953 5.18580 5.26541 5.28605 5.44925 5.54213 5.58638 5.59844 5.73772 5.88300 5.93360 6.09897 6.17009 6.33847 6.53136 6.54103 6.55110 6.76314 6.89220 6.96618 7.04902 7.08819 7.24905 7.45854 7.65101 8.00396 8.22357 8.58363 8.90153 9.30989 9.51484 10.10299 10.81524 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.005080 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.966477 B = 5510.059918 C = 7217.139838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.451 5.451 3 C -0.299 4.299 4 H 0.096 0.904 5 C 0.030 3.970 6 N -0.887 5.887 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.270 1.270 11 C 0.440 3.560 12 O -0.552 6.552 13 C 0.151 3.849 14 H 0.094 0.906 15 C -0.096 4.096 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.110 4.110 22 N -0.720 5.720 23 C 0.512 3.488 24 O -0.486 6.486 25 C 0.047 3.953 26 N -0.830 5.830 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.266 0.734 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.394 0.606 39 H 0.047 0.953 40 H 0.095 0.905 41 H 0.348 0.652 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -17.743 -2.740 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.172 5.172 3 C -0.427 4.427 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.527 5.527 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.195 1.195 11 C 0.226 3.774 12 O -0.433 6.433 13 C 0.042 3.958 14 H 0.112 0.888 15 C -0.134 4.134 16 C -0.062 4.062 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.128 4.128 22 N -0.373 5.373 23 C 0.296 3.704 24 O -0.357 6.357 25 C -0.087 4.087 26 N -0.362 5.362 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.226 0.774 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.162 0.838 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.233 -16.357 -2.123 17.029 hybrid contribution -0.444 -0.289 -0.354 0.638 sum -4.678 -16.645 -2.478 17.467 Atomic orbital electron populations 1.21536 0.81592 0.98602 1.01419 1.43537 1.05163 1.04585 1.63915 1.19605 0.99857 0.83907 1.39370 0.88628 1.25294 0.96617 0.99924 0.95444 1.69974 1.18011 1.29215 1.35490 0.85965 0.79690 0.81417 0.77768 1.20461 1.21027 1.19489 1.20153 0.88492 0.84572 0.84192 1.90600 1.13358 1.86235 1.53089 1.20765 0.91935 0.87371 0.95756 0.88796 1.20974 1.00057 0.95133 0.97260 1.19974 0.93811 0.95004 0.97457 1.21178 0.93344 0.98855 1.00217 1.21112 0.99621 0.92614 1.00396 1.21060 0.94987 0.97391 1.01597 1.21082 0.94030 0.98145 1.00832 1.21015 0.99493 0.92066 1.00224 1.45546 1.23388 1.36999 1.31403 1.20206 0.80915 0.84547 0.84719 1.90721 1.70893 1.48539 1.25549 1.21603 0.92154 0.96238 0.98733 1.58186 1.17521 1.54228 1.06226 0.92463 0.91308 0.95897 0.92418 0.89414 0.88380 0.85758 0.86331 0.86628 0.86639 0.86829 0.77360 0.93545 0.88677 0.83762 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.46 7.81 59.85 0.47 2.93 16 2 N -0.45 -11.61 3.02 -122.19 -0.37 -11.98 16 3 C -0.30 -8.55 9.27 -14.93 -0.14 -8.69 16 4 H 0.10 2.90 7.42 -52.49 -0.39 2.51 16 5 C 0.03 0.80 5.10 -17.47 -0.09 0.71 16 6 N -0.89 -23.93 10.67 55.50 0.59 -23.34 16 7 Si 0.92 21.40 29.57 -169.99 -5.03 16.37 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 C 0.44 10.86 6.62 -10.99 -0.07 10.78 16 12 O -0.55 -15.92 13.38 -17.94 -0.24 -16.16 16 13 C 0.15 2.74 2.26 -69.08 -0.16 2.58 16 14 H 0.09 1.50 6.30 -51.93 -0.33 1.18 16 15 C -0.10 -1.68 4.61 -27.88 -0.13 -1.81 16 16 C -0.06 -0.89 4.95 -104.62 -0.52 -1.40 16 17 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 18 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 19 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 20 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 21 C -0.11 -1.43 9.31 -39.58 -0.37 -1.79 16 22 N -0.72 -11.24 4.58 -54.93 -0.25 -11.50 16 23 C 0.51 8.88 5.93 -10.98 -0.07 8.82 16 24 O -0.49 -10.93 12.06 -17.93 -0.22 -11.15 16 25 C 0.05 0.59 7.27 -4.97 -0.04 0.56 16 26 N -0.83 -10.77 9.25 -11.41 -0.11 -10.87 16 27 H 0.06 1.30 7.15 -51.93 -0.37 0.93 16 28 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 29 H 0.02 0.40 5.89 -51.93 -0.31 0.10 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.49 16 31 H 0.09 1.62 6.92 -51.93 -0.36 1.26 16 32 H 0.10 1.99 5.99 -51.93 -0.31 1.68 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.11 1.51 7.35 -52.49 -0.39 1.12 16 38 H 0.39 4.66 8.83 -40.82 -0.36 4.30 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.35 4.49 8.69 -39.29 -0.34 4.15 16 42 H 0.34 3.22 9.08 -39.29 -0.36 2.86 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -35.81 344.32 -8.66 -44.46 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.55 Total: 13.42 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.68 Total: 5.56 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.13 Total: -57.69 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.46 Total: -27.31 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.81 -8.66 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.570 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds