Wall clock time and date at job start Fri Apr 10 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99852 * 2 1 4 4 H 1.08002 * 120.00071 * 203.33674 * 3 2 1 5 5 C 1.38949 * 119.99754 * 23.32763 * 3 2 1 6 6 N 1.31405 * 120.00342 * 11.46344 * 5 3 2 7 7 Si 1.86806 * 119.99904 * 191.45716 * 5 3 2 8 8 H 1.48503 * 109.46940 * 84.94637 * 7 5 3 9 9 H 1.48502 * 109.47213 * 204.94795 * 7 5 3 10 10 H 1.48497 * 109.46937 * 324.94973 * 7 5 3 11 11 C 1.34773 * 120.00409 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00091 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99719 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.47044 * 40.01096 * 13 11 2 15 15 C 1.52995 * 109.47689 * 280.00449 * 13 11 2 16 16 C 1.50701 * 109.47395 * 175.00039 * 15 13 11 17 17 C 1.38235 * 119.99746 * 269.72868 * 16 15 13 18 18 C 1.38233 * 119.99927 * 179.76897 * 17 16 15 19 19 C 1.38242 * 119.99494 * 0.50146 * 18 17 16 20 20 C 1.38233 * 120.00230 * 359.75190 * 19 18 17 21 21 C 1.38231 * 120.00147 * 359.97438 * 20 19 18 22 22 N 1.46502 * 109.46883 * 160.00351 * 13 11 2 23 23 C 1.34774 * 119.99945 * 60.00214 * 22 13 11 24 24 O 1.21278 * 120.00138 * 0.02562 * 23 22 13 25 25 C 1.50707 * 119.99833 * 179.97438 * 23 22 13 26 26 N 1.46901 * 109.46765 * 180.02562 * 25 23 22 27 27 H 1.09000 * 109.47328 * 271.24285 * 1 2 3 28 28 H 1.08999 * 109.47181 * 31.24556 * 1 2 3 29 29 H 1.09007 * 109.46886 * 151.24435 * 1 2 3 30 30 H 0.97005 * 120.00356 * 179.97438 * 6 5 3 31 31 H 1.09006 * 109.47197 * 54.99839 * 15 13 11 32 32 H 1.09000 * 109.47164 * 295.00548 * 15 13 11 33 33 H 1.07994 * 120.00243 * 359.97438 * 17 16 15 34 34 H 1.07997 * 120.00473 * 180.23101 * 18 17 16 35 35 H 1.08006 * 119.99897 * 179.72464 * 19 18 17 36 36 H 1.08006 * 119.99897 * 179.97438 * 20 19 18 37 37 H 1.07995 * 120.00338 * 179.97438 * 21 20 19 38 38 H 0.97003 * 120.00154 * 239.99859 * 22 13 11 39 39 H 1.08999 * 109.47376 * 299.99960 * 25 23 22 40 40 H 1.08999 * 109.46959 * 60.00026 * 25 23 22 41 41 H 1.00896 * 111.00321 * 56.04921 * 26 25 23 42 42 H 1.00901 * 110.99762 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1642 1.2256 -0.3705 5 6 1.5408 2.3414 0.4765 6 7 0.4037 2.2620 1.1303 7 14 2.3378 4.0061 0.1878 8 1 1.9429 4.5188 -1.1488 9 1 1.8891 4.9581 1.2355 10 1 3.8148 3.8647 0.2472 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 1 0.5219 -2.3932 -0.6609 15 6 0.9139 -2.7891 1.4201 16 6 0.0571 -4.0287 1.4003 17 6 -1.3098 -3.9213 1.2244 18 6 -2.0951 -5.0586 1.2015 19 6 -1.5148 -6.3026 1.3649 20 6 -0.1485 -6.4096 1.5460 21 6 0.6375 -5.2727 1.5632 22 7 2.2652 -3.5440 -0.4734 23 6 3.4030 -3.8249 0.1922 24 8 3.6983 -3.1907 1.1829 25 6 4.3077 -4.9277 -0.2940 26 7 5.4714 -5.0346 0.5962 27 1 -0.3634 0.0223 1.0274 28 1 -0.3633 0.8786 -0.5330 29 1 -0.3633 -0.9010 -0.4944 30 1 -0.0217 3.0676 1.4633 31 1 0.3323 -1.9514 1.8052 32 1 1.7793 -2.9557 2.0615 33 1 -1.7637 -2.9491 1.1016 34 1 -3.1626 -4.9751 1.0604 35 1 -2.1289 -7.1910 1.3514 36 1 0.3048 -7.3815 1.6740 37 1 1.7048 -5.3562 1.7051 38 1 2.0289 -4.0515 -1.2656 39 1 3.7626 -5.8716 -0.2937 40 1 4.6435 -4.7025 -1.3062 41 1 5.1832 -5.1794 1.5522 42 1 6.0940 -5.7676 0.2910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:35 Heat of formation + Delta-G solvation = -49.489803 kcal Electronic energy + Delta-G solvation = -25916.588156 eV Core-core repulsion = 22282.208194 eV Total energy + Delta-G solvation = -3634.379962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52893 -39.85233 -39.59327 -36.64680 -36.05538 -34.85251 -33.71866 -33.20934 -31.70773 -30.19922 -28.14059 -26.95153 -26.59854 -24.72304 -23.36312 -22.15942 -21.65957 -20.26626 -18.93684 -18.78976 -17.62729 -17.51991 -17.08335 -16.70637 -16.48446 -16.01811 -15.84151 -15.67929 -15.60280 -15.32229 -14.76601 -14.62932 -14.26255 -14.09612 -14.01198 -13.66918 -13.46032 -13.30994 -13.19190 -13.04081 -12.78477 -12.68630 -12.61829 -12.23486 -12.16165 -11.85867 -11.78172 -10.99616 -10.76124 -10.45054 -9.84414 -9.73512 -9.61975 -9.55751 -9.41414 -8.29846 -5.95231 0.49529 0.57030 1.36345 1.38656 1.50448 1.88643 2.08770 2.26190 2.37316 2.92108 3.09273 3.16844 3.75048 3.81491 3.83205 4.02927 4.09785 4.20020 4.22733 4.31078 4.38678 4.40467 4.49638 4.54666 4.66955 4.72507 4.84808 5.00800 5.06230 5.21154 5.25261 5.41349 5.45521 5.54717 5.64698 5.68884 5.84033 6.11055 6.12772 6.19045 6.53678 6.62341 6.79584 7.22242 7.51541 7.63262 8.12187 8.71401 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.005080 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.966477 B = 5510.059918 C = 7217.139838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.466 5.466 3 C -0.339 4.339 4 H 0.063 0.937 5 C -0.002 4.002 6 N -0.897 5.897 7 Si 0.986 3.014 8 H -0.262 1.262 9 H -0.272 1.272 10 H -0.282 1.282 11 C 0.429 3.571 12 O -0.602 6.602 13 C 0.165 3.835 14 H 0.122 0.878 15 C -0.080 4.080 16 C -0.079 4.079 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.118 4.118 22 N -0.707 5.707 23 C 0.503 3.497 24 O -0.545 6.545 25 C 0.056 3.944 26 N -0.851 5.851 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.272 0.728 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.415 0.585 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.347 0.653 42 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -20.087 -3.759 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.187 5.187 3 C -0.468 4.468 4 H 0.081 0.919 5 C -0.203 4.203 6 N -0.537 5.537 7 Si 0.810 3.190 8 H -0.187 1.187 9 H -0.197 1.197 10 H -0.208 1.208 11 C 0.216 3.784 12 O -0.487 6.487 13 C 0.055 3.945 14 H 0.140 0.860 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.145 4.145 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.136 4.136 22 N -0.361 5.361 23 C 0.289 3.711 24 O -0.420 6.420 25 C -0.078 4.078 26 N -0.386 5.386 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.144 0.856 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.121 0.879 38 H 0.252 0.748 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.160 0.840 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.365 -18.747 -3.189 20.053 hybrid contribution 0.184 0.372 0.006 0.415 sum -6.181 -18.374 -3.183 19.646 Atomic orbital electron populations 1.21474 0.79464 1.00041 1.00949 1.43800 1.06577 1.04376 1.63968 1.19499 0.99442 0.86150 1.41676 0.91916 1.26007 0.97109 1.02619 0.94582 1.70048 1.18375 1.30336 1.34893 0.85070 0.77930 0.77379 0.78652 1.18714 1.19684 1.20792 1.21306 0.88409 0.86357 0.82296 1.90556 1.15844 1.87376 1.54886 1.20551 0.92034 0.84687 0.97196 0.86032 1.20682 0.99000 0.96472 0.95776 1.19658 0.94095 0.93755 1.00371 1.21266 0.92723 0.99952 1.00579 1.21421 1.00771 0.92127 0.99276 1.21471 0.94985 0.98303 0.99532 1.21359 0.94348 0.98373 0.99698 1.20991 0.99365 0.92401 1.00875 1.45427 1.22803 1.36022 1.31888 1.21156 0.81256 0.84843 0.83799 1.90703 1.72256 1.50886 1.28189 1.21606 0.91590 0.96041 0.98575 1.58139 1.18367 1.55677 1.06379 0.93707 0.92845 0.91412 0.91821 0.91310 0.91920 0.85583 0.83813 0.83522 0.84108 0.87853 0.74834 0.89184 0.87524 0.83987 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.49 7.81 127.77 1.00 6.49 16 2 N -0.47 -24.98 3.02 -658.89 -1.99 -26.97 16 3 C -0.34 -20.32 9.27 84.04 0.78 -19.54 16 4 H 0.06 4.08 7.42 -2.91 -0.02 4.05 16 5 C 0.00 -0.10 5.10 84.93 0.43 0.33 16 6 N -0.90 -49.04 10.67 21.66 0.23 -48.81 16 7 Si 0.99 44.63 29.57 68.60 2.03 46.66 16 8 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 C 0.43 22.05 6.62 87.66 0.58 22.63 16 12 O -0.60 -36.76 13.38 19.40 0.26 -36.50 16 13 C 0.16 6.04 2.26 44.24 0.10 6.14 16 14 H 0.12 3.72 6.30 -2.39 -0.02 3.71 16 15 C -0.08 -2.91 4.61 29.85 0.14 -2.77 16 16 C -0.08 -2.17 4.95 -19.87 -0.10 -2.27 16 17 C -0.13 -2.99 9.70 22.27 0.22 -2.78 16 18 C -0.12 -2.17 10.05 22.27 0.22 -1.94 16 19 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 20 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 21 C -0.12 -2.89 9.31 22.27 0.21 -2.68 16 22 N -0.71 -21.76 4.58 -446.10 -2.04 -23.81 16 23 C 0.50 17.63 5.93 87.66 0.52 18.15 16 24 O -0.55 -25.81 12.06 19.44 0.23 -25.58 16 25 C 0.06 1.32 7.27 85.56 0.62 1.94 16 26 N -0.85 -21.62 9.25 -190.00 -1.76 -23.38 16 27 H 0.04 2.08 7.15 -2.39 -0.02 2.06 16 28 H 0.05 2.50 7.06 -2.39 -0.02 2.48 16 29 H 0.07 2.33 5.89 -2.38 -0.01 2.31 16 30 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 31 H 0.07 2.67 6.92 -2.38 -0.02 2.66 16 32 H 0.06 2.72 5.99 -2.39 -0.01 2.71 16 33 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.10 2.70 7.35 -2.91 -0.02 2.68 16 38 H 0.42 9.02 8.83 -92.71 -0.82 8.20 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.35 9.02 8.69 -89.70 -0.78 8.24 16 42 H 0.36 6.31 9.08 -89.69 -0.81 5.50 16 Total: -1.00 -83.83 344.32 0.80 -83.03 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -1.33 Total: 35.48 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 5.17 Total: 19.87 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.56 Total: -122.96 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: 0.49 Total: -62.08 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -83.83 0.80 -83.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.541 kcal (2) G-P(sol) polarization free energy of solvation -83.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds