Wall clock time and date at job start Fri Apr 10 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 119.99930 * 2 1 4 4 O 1.42898 * 109.47392 * 135.00219 * 3 2 1 5 5 C 1.35644 * 117.00188 * 180.02562 * 4 3 2 6 6 C 1.39337 * 120.54450 * 0.26566 * 5 4 3 7 7 C 1.38301 * 118.44111 * 180.28706 * 6 5 4 8 8 C 1.38765 * 119.44780 * 359.73272 * 7 6 5 9 9 N 1.31378 * 121.06168 * 359.97438 * 8 7 6 10 10 C 1.32855 * 121.69799 * 0.02562 * 9 8 7 11 11 C 1.47836 * 119.78059 * 179.97438 * 10 9 8 12 12 O 1.21559 * 119.99616 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00044 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.52996 * 109.46929 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46954 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99790 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99518 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00133 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99752 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46865 * 60.00143 * 22 20 18 24 24 H 1.48492 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47339 * 300.00371 * 22 20 18 26 26 H 1.08001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00081 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00026 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47412 * 14.99858 * 3 2 1 30 30 H 1.09006 * 109.47504 * 255.00138 * 3 2 1 31 31 H 1.08001 * 120.77992 * 0.02562 * 6 5 4 32 32 H 1.08003 * 120.27828 * 179.70864 * 7 6 5 33 33 H 1.07995 * 119.47044 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00161 * 359.71828 * 13 11 10 35 35 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 36 36 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 37 37 H 1.09000 * 109.46986 * 299.99958 * 15 14 13 38 38 H 1.09002 * 109.46857 * 60.00093 * 15 14 13 39 39 H 1.09000 * 109.47441 * 299.99910 * 16 15 14 40 40 H 1.08994 * 109.47235 * 60.00181 * 16 15 14 41 41 H 0.96998 * 119.99902 * 359.97438 * 17 16 15 42 42 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9075 2.3433 1.0786 6 6 3.6617 3.4774 0.3074 7 6 4.4886 4.5744 0.4668 8 6 5.5270 4.5181 1.3857 9 7 5.7365 3.4400 2.1066 10 6 4.9694 2.3617 1.9891 11 6 5.2439 1.1710 2.8213 12 8 4.5448 0.1821 2.7167 13 7 6.2692 1.1821 3.6960 14 6 6.5408 0.0023 4.5211 15 6 7.7524 0.2733 5.4153 16 6 8.0356 -0.9584 6.2774 17 7 9.1954 -0.6987 7.1341 18 6 9.6387 -1.6646 7.9977 19 1 9.1331 -2.6176 8.0476 20 6 10.7379 -1.4186 8.8090 21 7 11.3537 -0.2570 8.7485 22 14 11.3422 -2.7359 9.9876 23 1 11.7265 -3.9478 9.2204 24 1 12.5205 -2.2283 10.7351 25 1 10.2595 -3.0785 10.9444 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9927 31 1 2.8471 3.4978 -0.4015 32 1 4.3279 5.4673 -0.1191 33 1 6.1727 5.3747 1.5108 34 1 6.8296 1.9697 3.7765 35 1 5.6718 -0.2143 5.1424 36 1 6.7486 -0.8518 3.8766 37 1 8.6213 0.4900 4.7939 38 1 7.5444 1.1275 6.0598 39 1 7.1666 -1.1747 6.8988 40 1 8.2433 -1.8128 5.6333 41 1 9.6497 0.1571 7.0890 42 1 12.1220 -0.0853 9.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170735001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:53 Heat of formation + Delta-G solvation = -4.321325 kcal Electronic energy + Delta-G solvation = -23406.863960 eV Core-core repulsion = 19774.442651 eV Total energy + Delta-G solvation = -3632.421310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24190 -39.16828 -38.62266 -35.91879 -34.59182 -34.20450 -32.87249 -31.79027 -30.92854 -29.40351 -27.19380 -25.79914 -24.37290 -23.28000 -22.47488 -21.10104 -20.81046 -20.21654 -18.70920 -17.92881 -17.42492 -16.90538 -16.59571 -15.77712 -15.56149 -15.52483 -15.18946 -14.70401 -14.51861 -14.44400 -13.80601 -13.69863 -13.44130 -13.22428 -13.19615 -12.91996 -12.43064 -12.30171 -11.99192 -11.56286 -11.47271 -10.87737 -10.85301 -10.74425 -10.52870 -10.38360 -10.25768 -10.08373 -9.99194 -9.75066 -9.62357 -8.98351 -8.82394 -8.73162 -6.87887 -5.71965 -3.00643 0.33109 0.81913 1.60554 2.67668 2.82463 3.13296 3.48346 3.52033 3.53560 3.61187 3.95934 4.12759 4.26682 4.38456 4.54684 4.57708 4.64145 4.67179 4.80867 4.95706 5.09265 5.23607 5.38314 5.41604 5.47755 5.52834 5.62764 5.74052 5.92009 6.08603 6.10253 6.15917 6.16458 6.27884 6.40357 6.59038 6.81488 6.87333 6.91478 7.33840 7.68816 7.74519 8.29360 8.47103 9.57948 10.15928 10.50797 11.51026 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002209 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.192156 B =12675.213597 C =13911.978457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.078 3.922 4 O -0.266 6.266 5 C 0.139 3.861 6 C -0.178 4.178 7 C -0.108 4.108 8 C 0.058 3.942 9 N -0.419 5.419 10 C 0.047 3.953 11 C 0.567 3.433 12 O -0.518 6.518 13 N -0.710 5.710 14 C 0.123 3.877 15 C -0.138 4.138 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.409 0.591 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.677 11.491 -23.182 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.003 3.997 4 O -0.176 6.176 5 C 0.088 3.912 6 C -0.205 4.205 7 C -0.128 4.128 8 C -0.102 4.102 9 N -0.130 5.130 10 C -0.092 4.092 11 C 0.351 3.649 12 O -0.393 6.393 13 N -0.362 5.362 14 C -0.001 4.001 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.486 10.326 -22.426 32.082 hybrid contribution 0.038 0.324 -0.156 0.361 sum -20.448 10.650 -22.582 32.272 Atomic orbital electron populations 1.23870 0.95330 1.02579 0.99109 1.22626 0.95596 0.97766 1.00912 1.21995 0.88057 0.97483 0.92159 1.86456 1.40769 1.33289 1.57059 1.20010 0.90762 0.86924 0.93551 1.21754 1.02968 0.93413 1.02316 1.22217 0.94351 0.98561 0.97650 1.22739 0.97480 0.96264 0.93753 1.67641 1.24711 0.98913 1.21756 1.20770 0.94339 0.95058 0.99064 1.17590 0.81265 0.85929 0.80084 1.90842 1.48228 1.32899 1.67292 1.45889 1.31753 1.18877 1.39639 1.21391 0.98433 0.87249 0.92985 1.21941 0.96676 1.00699 0.98259 1.20522 0.91048 0.93755 0.91836 1.42341 1.32661 1.17375 1.45431 1.19208 1.09293 0.95047 1.13483 0.91155 1.24757 0.98675 0.97233 1.00504 1.69650 1.23407 1.22306 1.42984 0.86235 0.78005 0.80911 0.80854 1.21259 1.21710 1.21262 0.88363 0.87266 0.85827 0.91355 0.90868 0.83712 0.83883 0.81613 0.75491 0.91249 0.91249 0.91215 0.91212 0.96042 0.96047 0.78268 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 14.31 29.02 0.42 -0.61 16 2 C -0.15 -1.17 9.89 -36.03 -0.36 -1.52 16 3 C 0.08 0.59 5.17 36.00 0.19 0.78 16 4 O -0.27 -3.20 8.18 -40.58 -0.33 -3.54 16 5 C 0.14 1.56 6.71 -38.56 -0.26 1.30 16 6 C -0.18 -1.32 9.13 -39.15 -0.36 -1.67 16 7 C -0.11 -0.66 10.10 -39.36 -0.40 -1.06 16 8 C 0.06 0.46 11.17 -17.55 -0.20 0.26 16 9 N -0.42 -4.72 9.54 -9.71 -0.09 -4.81 16 10 C 0.05 0.61 6.76 -82.88 -0.56 0.05 16 11 C 0.57 8.76 7.80 -12.34 -0.10 8.66 16 12 O -0.52 -9.43 15.14 -16.64 -0.25 -9.68 16 13 N -0.71 -10.10 5.54 -61.25 -0.34 -10.44 16 14 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 15 C -0.14 -2.28 5.44 -26.73 -0.15 -2.42 16 16 C 0.16 3.26 6.26 -4.04 -0.03 3.23 16 17 N -0.73 -19.26 5.60 -59.91 -0.34 -19.60 16 18 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H 0.10 0.45 7.90 -52.49 -0.41 0.04 16 27 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.07 0.39 7.40 -51.93 -0.38 0.01 16 30 H 0.07 0.41 7.71 -51.93 -0.40 0.01 16 31 H 0.15 0.64 6.46 -52.49 -0.34 0.30 16 32 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 33 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.41 5.25 7.80 -40.82 -0.32 4.93 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -35.60 364.01 -8.17 -43.77 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.94 Total: 7.86 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.06 Total: 1.20 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.04 Total: -62.97 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.58 Total: -13.22 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.60 -8.17 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170735001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.447 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds