Wall clock time and date at job start Fri Apr 10 2020 17:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 119.99930 * 2 1 4 4 O 1.42898 * 109.47392 * 135.00219 * 3 2 1 5 5 C 1.35644 * 117.00188 * 180.02562 * 4 3 2 6 6 C 1.39337 * 120.54450 * 0.26566 * 5 4 3 7 7 C 1.38301 * 118.44111 * 180.28706 * 6 5 4 8 8 C 1.38765 * 119.44780 * 359.73272 * 7 6 5 9 9 N 1.31378 * 121.06168 * 359.97438 * 8 7 6 10 10 C 1.32855 * 121.69799 * 0.02562 * 9 8 7 11 11 C 1.47836 * 119.78059 * 179.97438 * 10 9 8 12 12 O 1.21559 * 119.99616 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00044 * 0.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47237 * 179.72043 * 14 13 11 16 16 C 1.52996 * 109.46929 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46954 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99790 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99518 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00133 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99752 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46865 * 60.00143 * 22 20 18 24 24 H 1.48492 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47339 * 300.00371 * 22 20 18 26 26 H 1.08001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00081 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00026 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47412 * 14.99858 * 3 2 1 30 30 H 1.09006 * 109.47504 * 255.00138 * 3 2 1 31 31 H 1.08001 * 120.77992 * 0.02562 * 6 5 4 32 32 H 1.08003 * 120.27828 * 179.70864 * 7 6 5 33 33 H 1.07995 * 119.47044 * 180.02562 * 8 7 6 34 34 H 0.97005 * 120.00161 * 359.71828 * 13 11 10 35 35 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 36 36 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 37 37 H 1.09000 * 109.46986 * 299.99958 * 15 14 13 38 38 H 1.09002 * 109.46857 * 60.00093 * 15 14 13 39 39 H 1.09000 * 109.47441 * 299.99910 * 16 15 14 40 40 H 1.08994 * 109.47235 * 60.00181 * 16 15 14 41 41 H 0.96998 * 119.99902 * 359.97438 * 17 16 15 42 42 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9075 2.3433 1.0786 6 6 3.6617 3.4774 0.3074 7 6 4.4886 4.5744 0.4668 8 6 5.5270 4.5181 1.3857 9 7 5.7365 3.4400 2.1066 10 6 4.9694 2.3617 1.9891 11 6 5.2439 1.1710 2.8213 12 8 4.5448 0.1821 2.7167 13 7 6.2692 1.1821 3.6960 14 6 6.5408 0.0023 4.5211 15 6 7.7524 0.2733 5.4153 16 6 8.0356 -0.9584 6.2774 17 7 9.1954 -0.6987 7.1341 18 6 9.6387 -1.6646 7.9977 19 1 9.1331 -2.6176 8.0476 20 6 10.7379 -1.4186 8.8090 21 7 11.3537 -0.2570 8.7485 22 14 11.3422 -2.7359 9.9876 23 1 11.7265 -3.9478 9.2204 24 1 12.5205 -2.2283 10.7351 25 1 10.2595 -3.0785 10.9444 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4868 -0.9927 31 1 2.8471 3.4978 -0.4015 32 1 4.3279 5.4673 -0.1191 33 1 6.1727 5.3747 1.5108 34 1 6.8296 1.9697 3.7765 35 1 5.6718 -0.2143 5.1424 36 1 6.7486 -0.8518 3.8766 37 1 8.6213 0.4900 4.7939 38 1 7.5444 1.1275 6.0598 39 1 7.1666 -1.1747 6.8988 40 1 8.2433 -1.8128 5.6333 41 1 9.6497 0.1571 7.0890 42 1 12.1220 -0.0853 9.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170735001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:52 Heat of formation + Delta-G solvation = -29.332332 kcal Electronic energy + Delta-G solvation = -23407.948519 eV Core-core repulsion = 19774.442651 eV Total energy + Delta-G solvation = -3633.505868 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98545 -40.22113 -39.34825 -37.50324 -35.90753 -35.08143 -33.92024 -33.26472 -31.76720 -31.03265 -27.76201 -27.24765 -25.63682 -24.25107 -23.79053 -22.57681 -21.84174 -20.87460 -19.54242 -19.14213 -18.63941 -18.13773 -17.29550 -16.97545 -16.77719 -16.49471 -16.19509 -15.94172 -15.60762 -15.27948 -15.27349 -15.01665 -14.65618 -14.45728 -14.12091 -13.76456 -13.72397 -13.30445 -13.05713 -12.78349 -12.61402 -12.57237 -12.45216 -12.10535 -12.06511 -11.99508 -11.79783 -11.31383 -10.93784 -10.85682 -10.71001 -10.43256 -10.14564 -9.50503 -9.02350 -7.95918 -5.25673 -0.37995 0.20811 1.08198 1.47429 1.51256 1.57349 1.73671 2.05484 2.24699 2.56592 2.81311 3.19407 3.37257 3.55366 3.66498 3.74989 3.89821 4.01131 4.05633 4.06338 4.13711 4.27462 4.28246 4.41962 4.48118 4.50446 4.70066 4.71324 4.83433 4.89383 4.93175 5.00542 5.26257 5.30129 5.39884 5.41176 5.48417 5.58913 5.64606 6.19869 6.26193 6.43067 6.80168 7.18027 7.32401 8.06779 8.31377 9.27446 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.002209 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.192156 B =12675.213597 C =13911.978457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.181 4.181 3 C 0.074 3.926 4 O -0.301 6.301 5 C 0.125 3.875 6 C -0.172 4.172 7 C -0.085 4.085 8 C 0.053 3.947 9 N -0.441 5.441 10 C 0.004 3.996 11 C 0.562 3.438 12 O -0.558 6.558 13 N -0.705 5.705 14 C 0.134 3.866 15 C -0.118 4.118 16 C 0.154 3.846 17 N -0.747 5.747 18 C -0.251 4.251 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.978 3.022 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.277 1.277 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.197 0.803 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.375 0.625 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.961 13.245 -24.724 35.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.000 4.000 4 O -0.212 6.212 5 C 0.074 3.926 6 C -0.198 4.198 7 C -0.104 4.104 8 C -0.109 4.109 9 N -0.153 5.153 10 C -0.133 4.133 11 C 0.348 3.652 12 O -0.436 6.436 13 N -0.357 5.357 14 C 0.010 3.990 15 C -0.156 4.156 16 C 0.027 3.973 17 N -0.390 5.390 18 C -0.383 4.383 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.806 3.194 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.203 1.203 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.196 0.804 32 H 0.207 0.793 33 H 0.214 0.786 34 H 0.253 0.747 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.207 0.793 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.797 12.062 -23.984 34.580 hybrid contribution 0.334 -0.122 0.203 0.409 sum -21.463 11.939 -23.781 34.186 Atomic orbital electron populations 1.24101 0.94691 1.03892 0.96521 1.22655 0.96391 0.97505 1.03397 1.22243 0.87577 0.97893 0.92333 1.86410 1.41925 1.34428 1.58467 1.20229 0.90429 0.87992 0.93963 1.22175 1.03804 0.92138 1.01714 1.22749 0.92177 0.99355 0.96131 1.23426 0.98332 0.95897 0.93242 1.67559 1.25099 0.99457 1.23169 1.20394 0.96826 0.95052 1.00993 1.18110 0.80545 0.86579 0.79932 1.90798 1.49539 1.34653 1.68625 1.45792 1.31873 1.18660 1.39394 1.21146 0.97467 0.87687 0.92714 1.21691 0.97321 0.98780 0.97775 1.20660 0.89250 0.95715 0.91691 1.42545 1.33939 1.16620 1.45919 1.19625 1.09316 0.95691 1.13669 0.90666 1.25635 0.99157 0.99550 1.02578 1.69808 1.23866 1.24224 1.44020 0.85150 0.77304 0.78311 0.78621 1.20327 1.21891 1.20335 0.86405 0.86538 0.87818 0.89206 0.89033 0.80406 0.79263 0.78634 0.74688 0.91727 0.91738 0.90906 0.90899 0.95857 0.95865 0.79255 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 14.31 67.78 0.97 -0.70 16 2 C -0.18 -2.82 9.89 25.65 0.25 -2.57 16 3 C 0.07 1.05 5.17 71.24 0.37 1.41 16 4 O -0.30 -7.42 8.18 -68.60 -0.56 -7.98 16 5 C 0.12 2.74 6.71 22.93 0.15 2.90 16 6 C -0.17 -2.01 9.13 22.55 0.21 -1.81 16 7 C -0.08 -0.67 10.10 22.41 0.23 -0.45 16 8 C 0.05 0.69 11.17 84.89 0.95 1.64 16 9 N -0.44 -9.62 9.54 -184.63 -1.76 -11.38 16 10 C 0.00 0.10 6.76 41.93 0.28 0.38 16 11 C 0.56 18.24 7.80 86.78 0.68 18.92 16 12 O -0.56 -21.65 15.14 17.09 0.26 -21.39 16 13 N -0.71 -20.82 5.54 -465.97 -2.58 -23.41 16 14 C 0.13 4.17 5.67 86.38 0.49 4.66 16 15 C -0.12 -3.93 5.44 30.59 0.17 -3.76 16 16 C 0.15 6.46 6.26 86.38 0.54 7.00 16 17 N -0.75 -39.70 5.60 -343.45 -1.92 -41.62 16 18 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 21 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 22 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H 0.12 0.79 7.90 -2.91 -0.02 0.76 16 27 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 28 H 0.10 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.09 0.82 7.40 -2.39 -0.02 0.80 16 30 H 0.09 0.87 7.71 -2.38 -0.02 0.86 16 31 H 0.18 0.79 6.46 -2.91 -0.02 0.77 16 32 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.42 10.95 7.80 -92.70 -0.72 10.23 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.38 20.86 7.67 -92.71 -0.71 20.15 16 42 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.79 364.01 1.94 -77.85 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.39 Total: 29.10 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.59 Total: 9.80 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -5.99 Total: -136.59 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.30 Total: -29.37 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -79.79 1.94 -77.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170735001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.519 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds