Wall clock time and date at job start Fri Apr 10 2020 17:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00017 * 2 1 4 4 O 1.21551 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.47856 * 120.00069 * 180.02562 * 3 2 1 6 6 C 1.39702 * 120.07371 * 0.02562 * 5 3 2 7 7 C 1.38060 * 120.14518 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.29925 * 359.97267 * 7 6 5 9 9 C 1.39672 * 120.14169 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.07325 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00160 * 179.72543 * 10 9 8 12 12 N 1.34784 * 120.00013 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72934 * 12 10 9 14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46990 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47302 * 179.97438 * 15 14 13 17 17 C 1.36941 * 119.99996 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99555 * 179.97438 * 17 16 15 20 20 N 1.31608 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99589 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47276 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47057 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47129 * 240.00171 * 21 19 17 25 25 C 1.39298 * 120.07497 * 180.25734 * 5 3 2 26 26 H 1.08998 * 109.47139 * 59.99851 * 1 2 3 27 27 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46960 * 299.99915 * 1 2 3 29 29 H 0.96994 * 119.99970 * 180.02562 * 2 1 3 30 30 H 1.08000 * 119.93122 * 359.97438 * 6 5 3 31 31 H 1.08003 * 119.85015 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.93371 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99846 * 359.72723 * 12 10 9 34 34 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 35 35 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 36 36 H 1.09000 * 109.47195 * 299.99415 * 14 13 12 37 37 H 1.08994 * 109.47584 * 59.99634 * 14 13 12 38 38 H 1.09005 * 109.47033 * 299.99952 * 15 14 13 39 39 H 1.08999 * 109.47677 * 59.99180 * 15 14 13 40 40 H 0.97001 * 120.00220 * 359.97438 * 16 15 14 41 41 H 0.97002 * 119.99867 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.14508 * 359.97438 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1672 -0.0006 6 6 4.3176 -0.0418 -0.0017 7 6 5.6982 -0.0435 -0.0017 8 6 6.3963 1.1480 -0.0012 9 6 5.7088 2.3638 -0.0001 10 6 6.4579 3.6386 -0.0002 11 8 5.8583 4.6959 -0.0043 12 7 7.8057 3.6283 -0.0007 13 6 8.5479 4.8913 -0.0067 14 6 10.0499 4.6002 -0.0067 15 6 10.8251 5.9193 -0.0123 16 7 12.2633 5.6405 -0.0117 17 6 13.1611 6.6746 -0.0168 18 1 12.8090 7.6955 -0.0208 19 6 14.5239 6.4104 -0.0156 20 7 14.9531 5.1662 -0.0091 21 14 15.7486 7.8208 -0.0218 22 1 15.0160 9.1125 -0.0281 23 1 16.6017 7.7410 1.1911 24 1 16.6017 7.7303 -1.2339 25 6 4.3155 2.3726 0.0048 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.7776 -0.9771 -0.0017 31 1 6.2346 -0.9809 -0.0021 32 1 7.4763 1.1398 -0.0016 33 1 8.2843 2.7845 0.0030 34 1 8.2886 5.4608 -0.8992 35 1 8.2893 5.4689 0.8807 36 1 10.3096 4.0305 0.8856 37 1 10.3082 4.0227 -0.8943 38 1 10.5655 6.4894 -0.9044 39 1 10.5668 6.4964 0.8755 40 1 12.5797 4.7236 -0.0077 41 1 15.9054 4.9817 -0.0087 42 1 3.7791 3.3100 0.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176547506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:17 Heat of formation + Delta-G solvation = -38.262028 kcal Electronic energy + Delta-G solvation = -22968.479619 eV Core-core repulsion = 19334.586530 eV Total energy + Delta-G solvation = -3633.893089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83601 -39.82809 -38.22077 -36.08308 -35.16833 -34.44565 -32.51471 -31.61319 -31.50309 -29.50634 -27.46237 -25.62020 -24.32701 -23.42745 -22.33738 -21.55536 -21.17696 -20.27553 -18.95411 -17.18274 -16.88945 -16.64530 -16.52990 -15.96751 -15.77660 -15.62757 -14.90368 -14.70682 -14.46738 -14.46052 -14.19991 -13.75769 -13.56133 -13.29711 -13.00110 -12.85503 -12.84585 -12.45335 -12.37603 -11.81189 -11.65535 -10.98548 -10.94718 -10.80228 -10.65017 -10.48211 -10.13593 -9.98421 -9.73530 -9.72139 -9.53434 -9.46479 -9.09704 -8.89634 -6.94756 -5.78737 -3.07504 0.17841 0.63906 2.18651 2.62808 2.84305 3.02785 3.43062 3.49038 3.51205 3.51720 4.10580 4.21093 4.32696 4.57296 4.59163 4.62227 4.73555 4.90746 5.02355 5.03176 5.17192 5.28306 5.31930 5.41928 5.56378 5.59621 5.72224 5.75106 5.79956 5.83933 5.96016 6.03624 6.16512 6.24070 6.29869 6.38974 6.77148 6.81323 6.92917 7.36191 7.69976 7.71619 8.06019 8.40279 9.51653 10.08482 10.43144 11.44353 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.001833 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.286500 B =15272.176716 C =15838.402400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.528 6.528 5 C -0.146 4.146 6 C -0.065 4.065 7 C -0.131 4.131 8 C -0.060 4.060 9 C -0.136 4.136 10 C 0.554 3.446 11 O -0.532 6.532 12 N -0.721 5.721 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.001 4.001 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.401 0.599 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.233 -18.781 0.046 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.149 4.149 6 C -0.084 4.084 7 C -0.149 4.149 8 C -0.078 4.078 9 C -0.139 4.139 10 C 0.340 3.660 11 O -0.409 6.409 12 N -0.373 5.373 13 C -0.002 4.002 14 C -0.176 4.176 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.021 4.021 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.236 0.764 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -27.053 -17.048 0.043 31.977 hybrid contribution 1.390 -0.561 0.000 1.499 sum -25.663 -17.609 0.043 31.123 Atomic orbital electron populations 1.21579 0.78946 1.02430 1.02707 1.45686 1.08035 1.08489 1.76339 1.18247 0.87098 0.83848 0.76224 1.90821 1.69771 1.31068 1.48809 1.19836 0.92897 0.94232 1.07973 1.21459 0.94764 0.96827 0.95362 1.21074 0.93824 0.98513 1.01510 1.21617 1.00504 0.91648 0.94076 1.20004 0.94047 0.93532 1.06351 1.18155 0.82294 0.88573 0.76930 1.90811 1.68683 1.32055 1.49377 1.45987 1.05844 1.10590 1.74839 1.21421 0.91116 0.84834 1.02797 1.21952 0.92344 1.00563 1.02749 1.20524 0.85389 0.93010 0.98307 1.42337 0.99101 1.06738 1.89618 1.19308 0.87169 0.88115 1.42514 0.91000 1.24748 0.96933 0.96386 1.02986 1.69664 1.13644 1.17067 1.57944 0.86094 0.81420 0.81383 0.77179 1.20490 1.21840 1.21845 1.21403 0.92460 0.98585 0.89629 0.91940 0.90427 0.91931 0.76398 0.85231 0.84395 0.84719 0.76507 0.91046 0.91040 0.91242 0.91235 0.95973 0.95977 0.78320 0.93568 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.85 0.64 1.05 16 2 N -0.73 -4.19 5.66 -68.04 -0.39 -4.57 16 3 C 0.56 5.45 7.77 -12.33 -0.10 5.36 16 4 O -0.53 -7.40 16.34 5.32 0.09 -7.31 16 5 C -0.15 -1.29 5.87 -105.02 -0.62 -1.91 16 6 C -0.07 -0.36 9.54 -39.10 -0.37 -0.73 16 7 C -0.13 -0.70 10.02 -39.70 -0.40 -1.10 16 8 C -0.06 -0.42 9.54 -39.10 -0.37 -0.80 16 9 C -0.14 -1.42 5.87 -105.02 -0.62 -2.04 16 10 C 0.55 7.32 7.77 -12.32 -0.10 7.22 16 11 O -0.53 -9.15 16.34 5.32 0.09 -9.06 16 12 N -0.72 -8.27 5.51 -61.25 -0.34 -8.60 16 13 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 14 C -0.14 -2.05 5.44 -26.73 -0.15 -2.20 16 15 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 16 N -0.73 -18.54 5.60 -59.91 -0.34 -18.87 16 17 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.40 0.97 6.85 -40.82 -0.28 0.69 16 30 H 0.13 0.25 6.39 -52.49 -0.34 -0.09 16 31 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.14 0.67 6.39 -52.49 -0.34 0.33 16 33 H 0.40 3.41 6.50 -40.82 -0.27 3.15 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.15 1.99 7.23 -52.48 -0.38 1.61 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -37.16 360.97 -8.15 -45.31 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.68 Total: 5.95 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.72 Total: 1.72 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.33 Total: -59.48 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.17 Total: -16.37 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.16 -8.15 -45.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176547506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.047 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds