Wall clock time and date at job start Fri Apr 10 2020 17:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00017 * 2 1 4 4 O 1.21551 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.47856 * 120.00069 * 180.02562 * 3 2 1 6 6 C 1.39702 * 120.07371 * 0.02562 * 5 3 2 7 7 C 1.38060 * 120.14518 * 180.02562 * 6 5 3 8 8 C 1.38096 * 120.29925 * 359.97267 * 7 6 5 9 9 C 1.39672 * 120.14169 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.07325 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00160 * 179.72543 * 10 9 8 12 12 N 1.34784 * 120.00013 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72934 * 12 10 9 14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46990 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47302 * 179.97438 * 15 14 13 17 17 C 1.36941 * 119.99996 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99555 * 179.97438 * 17 16 15 20 20 N 1.31608 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99589 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47276 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47057 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47129 * 240.00171 * 21 19 17 25 25 C 1.39298 * 120.07497 * 180.25734 * 5 3 2 26 26 H 1.08998 * 109.47139 * 59.99851 * 1 2 3 27 27 H 1.08997 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46960 * 299.99915 * 1 2 3 29 29 H 0.96994 * 119.99970 * 180.02562 * 2 1 3 30 30 H 1.08000 * 119.93122 * 359.97438 * 6 5 3 31 31 H 1.08003 * 119.85015 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.93371 * 180.02562 * 8 7 6 33 33 H 0.97005 * 119.99846 * 359.72723 * 12 10 9 34 34 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 35 35 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 36 36 H 1.09000 * 109.47195 * 299.99415 * 14 13 12 37 37 H 1.08994 * 109.47584 * 59.99634 * 14 13 12 38 38 H 1.09005 * 109.47033 * 299.99952 * 15 14 13 39 39 H 1.08999 * 109.47677 * 59.99180 * 15 14 13 40 40 H 0.97001 * 120.00220 * 359.97438 * 16 15 14 41 41 H 0.97002 * 119.99867 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.14508 * 359.97438 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6175 1.1672 -0.0006 6 6 4.3176 -0.0418 -0.0017 7 6 5.6982 -0.0435 -0.0017 8 6 6.3963 1.1480 -0.0012 9 6 5.7088 2.3638 -0.0001 10 6 6.4579 3.6386 -0.0002 11 8 5.8583 4.6959 -0.0043 12 7 7.8057 3.6283 -0.0007 13 6 8.5479 4.8913 -0.0067 14 6 10.0499 4.6002 -0.0067 15 6 10.8251 5.9193 -0.0123 16 7 12.2633 5.6405 -0.0117 17 6 13.1611 6.6746 -0.0168 18 1 12.8090 7.6955 -0.0208 19 6 14.5239 6.4104 -0.0156 20 7 14.9531 5.1662 -0.0091 21 14 15.7486 7.8208 -0.0218 22 1 15.0160 9.1125 -0.0281 23 1 16.6017 7.7410 1.1911 24 1 16.6017 7.7303 -1.2339 25 6 4.3155 2.3726 0.0048 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.7776 -0.9771 -0.0017 31 1 6.2346 -0.9809 -0.0021 32 1 7.4763 1.1398 -0.0016 33 1 8.2843 2.7845 0.0030 34 1 8.2886 5.4608 -0.8992 35 1 8.2893 5.4689 0.8807 36 1 10.3096 4.0305 0.8856 37 1 10.3082 4.0227 -0.8943 38 1 10.5655 6.4894 -0.9044 39 1 10.5668 6.4964 0.8755 40 1 12.5797 4.7236 -0.0077 41 1 15.9054 4.9817 -0.0087 42 1 3.7791 3.3100 0.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176547506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:17 Heat of formation + Delta-G solvation = -67.379399 kcal Electronic energy + Delta-G solvation = -22969.742243 eV Core-core repulsion = 19334.586530 eV Total energy + Delta-G solvation = -3635.155713 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.59326 -40.72931 -38.97169 -37.53023 -36.00578 -35.82207 -33.93009 -32.73530 -32.15105 -31.07224 -28.04333 -27.08508 -25.29719 -24.54345 -23.53999 -22.62627 -22.22914 -21.14825 -19.77550 -19.07865 -17.75671 -17.48141 -17.21131 -16.88632 -16.85407 -16.52233 -16.35343 -15.68403 -15.57743 -15.42510 -15.25547 -14.94264 -14.81075 -14.45029 -14.18899 -13.92279 -13.37125 -13.34016 -13.20587 -12.93632 -12.84633 -12.61359 -12.46003 -12.41613 -12.06915 -12.03931 -11.80051 -11.29757 -11.09721 -10.95654 -10.42046 -10.29987 -10.04552 -9.98458 -9.01558 -7.96952 -5.25711 -0.43171 -0.05238 1.48390 1.48567 1.48719 1.59035 1.93571 1.98644 2.19623 2.56174 2.81708 3.37241 3.53982 3.58339 3.73982 3.80676 4.00695 4.06761 4.07665 4.25665 4.32871 4.38692 4.46340 4.60602 4.60988 4.71515 4.71967 4.86246 4.87475 4.94847 5.13486 5.17222 5.22474 5.25337 5.31187 5.31783 5.34751 5.49480 5.70519 6.26201 6.43474 6.44687 7.09105 7.11951 7.32958 8.07261 8.31701 9.26626 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.001833 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.286500 B =15272.176716 C =15838.402400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.551 3.449 4 O -0.586 6.586 5 C -0.158 4.158 6 C -0.043 4.043 7 C -0.119 4.119 8 C -0.052 4.052 9 C -0.156 4.156 10 C 0.551 3.449 11 O -0.585 6.585 12 N -0.707 5.707 13 C 0.131 3.869 14 C -0.117 4.117 15 C 0.151 3.849 16 N -0.745 5.745 17 C -0.251 4.251 18 H 0.074 0.926 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.973 3.027 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.027 4.027 26 H 0.049 0.951 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.421 0.579 30 H 0.175 0.825 31 H 0.182 0.818 32 H 0.160 0.840 33 H 0.417 0.583 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.989 -22.129 0.041 34.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.339 3.661 4 O -0.467 6.467 5 C -0.161 4.161 6 C -0.062 4.062 7 C -0.136 4.136 8 C -0.070 4.070 9 C -0.159 4.159 10 C 0.340 3.660 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.007 3.993 14 C -0.155 4.155 15 C 0.024 3.976 16 N -0.388 5.388 17 C -0.382 4.382 18 H 0.092 0.908 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.047 4.047 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.068 0.932 29 H 0.259 0.741 30 H 0.193 0.807 31 H 0.199 0.801 32 H 0.178 0.822 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.209 0.791 41 H 0.061 0.939 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.821 -20.468 0.039 33.739 hybrid contribution 1.225 0.386 0.002 1.285 sum -25.595 -20.082 0.041 32.533 Atomic orbital electron populations 1.21745 0.78154 1.04749 1.01517 1.45580 1.08604 1.08080 1.74188 1.18560 0.87697 0.84126 0.75711 1.90791 1.70856 1.33298 1.51801 1.19836 0.92464 0.94767 1.09064 1.21945 0.95251 0.96852 0.92136 1.21595 0.93713 0.99294 0.99047 1.21948 1.01818 0.90802 0.92463 1.19773 0.93448 0.93481 1.09203 1.18667 0.82542 0.89111 0.75721 1.90779 1.69713 1.34190 1.51936 1.45770 1.05368 1.10668 1.74084 1.21155 0.90377 0.85675 1.02095 1.21696 0.92186 0.98021 1.03607 1.20681 0.83274 0.95706 0.97973 1.42515 1.00961 1.05838 1.89535 1.19688 0.88077 0.88972 1.41503 0.90825 1.25551 0.98714 0.98787 1.03475 1.69799 1.13723 1.18874 1.59328 0.85075 0.78932 0.78962 0.76789 1.19313 1.21836 1.21839 1.21206 0.93109 0.98321 0.92108 0.93209 0.86238 0.93198 0.74074 0.80743 0.80052 0.82204 0.74483 0.91887 0.91885 0.90354 0.90338 0.96074 0.96084 0.79116 0.93876 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.70 127.77 1.37 2.02 16 2 N -0.71 -6.78 5.66 -487.46 -2.76 -9.54 16 3 C 0.55 10.89 7.77 86.79 0.67 11.57 16 4 O -0.59 -17.92 16.34 -3.88 -0.06 -17.98 16 5 C -0.16 -2.70 5.87 -20.12 -0.12 -2.82 16 6 C -0.04 -0.30 9.54 22.58 0.22 -0.08 16 7 C -0.12 -0.67 10.02 22.19 0.22 -0.45 16 8 C -0.05 -0.57 9.54 22.58 0.22 -0.36 16 9 C -0.16 -3.26 5.87 -20.12 -0.12 -3.38 16 10 C 0.55 15.06 7.77 86.79 0.67 15.74 16 11 O -0.58 -21.75 16.34 -3.88 -0.06 -21.81 16 12 N -0.71 -15.71 5.51 -465.95 -2.57 -18.28 16 13 C 0.13 3.51 5.67 86.38 0.49 4.00 16 14 C -0.12 -3.35 5.44 30.60 0.17 -3.18 16 15 C 0.15 5.90 6.26 86.38 0.54 6.44 16 16 N -0.75 -37.55 5.60 -343.45 -1.92 -39.48 16 17 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 18 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -4.17 5.50 84.87 0.47 -3.71 16 20 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 21 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 C -0.03 -0.65 9.14 22.79 0.21 -0.45 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.42 0.36 6.85 -92.71 -0.64 -0.27 16 30 H 0.18 -0.42 6.39 -2.91 -0.02 -0.44 16 31 H 0.18 -0.39 8.06 -2.91 -0.02 -0.42 16 32 H 0.16 0.90 6.39 -2.91 -0.02 0.88 16 33 H 0.42 6.19 6.50 -92.70 -0.60 5.59 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.38 19.69 7.67 -92.71 -0.71 18.97 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.11 3.45 7.23 -2.91 -0.02 3.43 16 Total: -1.00 -86.13 360.97 -0.10 -86.22 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.88 Total: 18.76 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.85 Total: 12.08 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.97 Total: -125.38 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.13 Total: -39.80 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -86.13 -0.10 -86.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176547506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.845 kcal (2) G-P(sol) polarization free energy of solvation -86.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds