Wall clock time and date at job start Fri Apr 10 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00127 * 2 1 4 4 H 1.08997 * 110.63898 * 26.86319 * 3 2 1 5 5 C 1.54322 * 110.87375 * 263.61107 * 3 2 1 6 6 N 1.47014 * 107.27294 * 219.37163 * 5 3 2 7 7 C 1.36945 * 125.65172 * 178.98713 * 6 5 3 8 8 H 1.07992 * 120.00094 * 174.79208 * 7 6 5 9 9 C 1.38809 * 119.99525 * 354.79028 * 7 6 5 10 10 N 1.31623 * 120.00385 * 7.04895 * 9 7 6 11 11 Si 1.86809 * 119.99864 * 187.05332 * 9 7 6 12 12 H 1.48498 * 109.46772 * 94.98638 * 11 9 7 13 13 H 1.48498 * 109.46915 * 214.98740 * 11 9 7 14 14 H 1.48498 * 109.46957 * 334.98697 * 11 9 7 15 15 C 1.47423 * 108.70396 * 358.94438 * 6 5 3 16 16 C 1.54908 * 104.83221 * 24.12712 * 15 6 5 17 17 H 1.08998 * 111.03799 * 81.08219 * 16 15 6 18 18 N 1.46505 * 111.00251 * 204.92009 * 16 15 6 19 19 C 1.34775 * 119.99996 * 267.19293 * 18 16 15 20 20 O 1.21789 * 119.99769 * 0.02562 * 19 18 16 21 21 C 1.41511 * 120.00275 * 180.02562 * 19 18 16 22 22 C 1.35619 * 120.00223 * 179.97438 * 21 19 18 23 23 C 1.41666 * 120.00074 * 180.27541 * 22 21 19 24 24 C 1.38287 * 126.26019 * 179.41315 * 23 22 21 25 25 C 1.39788 * 107.07851 * 179.84660 * 24 23 22 26 26 C 1.35505 * 107.90967 * 0.42330 * 25 24 23 27 27 N 1.35754 * 108.90981 * 359.73511 * 26 25 24 28 28 H 0.97001 * 125.68825 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47233 * 299.99943 * 1 2 3 31 31 H 1.09006 * 109.47461 * 60.00033 * 1 2 3 32 32 H 1.09001 * 109.88589 * 338.79411 * 5 3 2 33 33 H 1.09005 * 109.88089 * 99.95277 * 5 3 2 34 34 H 0.96996 * 119.99926 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.36767 * 265.28607 * 15 6 5 36 36 H 1.08999 * 110.37241 * 142.96913 * 15 6 5 37 37 H 0.97003 * 119.99770 * 87.20160 * 18 16 15 38 38 H 1.08000 * 119.99926 * 0.02562 * 21 19 18 39 39 H 1.08000 * 119.99844 * 359.97438 * 22 21 19 40 40 H 1.08002 * 126.45983 * 359.97438 * 24 23 22 41 41 H 1.07993 * 126.04545 * 180.18180 * 25 24 23 42 42 H 1.08000 * 125.54866 * 179.76264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0265 0.4609 5 6 2.3805 1.7425 -1.4330 6 7 3.6668 2.4500 -1.3549 7 6 4.3515 2.9806 -2.4156 8 1 5.2493 3.5561 -2.2453 9 6 3.8916 2.7786 -3.7096 10 7 2.7275 2.1984 -3.9113 11 14 4.9249 3.3301 -5.1649 12 1 5.7390 2.1888 -5.6546 13 1 4.0333 3.8052 -6.2532 14 1 5.8236 4.4346 -4.7436 15 6 4.0971 2.4946 0.0544 16 6 3.3817 1.2957 0.7256 17 1 3.9169 0.3651 0.5369 18 7 3.2165 1.5209 2.1637 19 6 4.1466 1.0686 3.0279 20 8 5.1247 0.4731 2.6131 21 6 3.9868 1.2856 4.4171 22 6 4.9225 0.8300 5.2866 23 6 4.7597 1.0422 6.6778 24 6 5.6223 0.6259 7.6752 25 6 5.0782 1.0487 8.8915 26 6 3.9157 1.6924 8.6266 27 7 3.7104 1.6955 7.2847 28 1 2.9509 2.0915 6.8293 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.4774 0.8665 -2.0744 33 1 1.6137 2.4097 -1.8268 34 1 2.4060 2.0576 -4.8155 35 1 3.7842 3.4306 0.5172 36 1 5.1786 2.3788 0.1248 37 1 2.4376 1.9954 2.4940 38 1 3.1193 1.8134 4.7849 39 1 5.7894 0.3012 4.9189 40 1 6.5438 0.0791 7.5398 41 1 5.5066 0.8871 9.8696 42 1 3.2593 2.1319 9.3631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212172772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:26 Heat of formation + Delta-G solvation = 17.732260 kcal Electronic energy + Delta-G solvation = -24290.171862 eV Core-core repulsion = 20658.706867 eV Total energy + Delta-G solvation = -3631.464995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40134 -39.76038 -38.17065 -35.91654 -34.09638 -33.84610 -31.76099 -31.38665 -29.20448 -28.46527 -27.04058 -26.11283 -24.58814 -23.40576 -21.25982 -20.61356 -20.50724 -20.20156 -19.58351 -17.92816 -17.32038 -16.65539 -16.31570 -15.52982 -14.94703 -14.76493 -14.51234 -14.41308 -14.23213 -14.18848 -13.98516 -13.80984 -13.22977 -12.82417 -12.67431 -12.42351 -12.23517 -12.18694 -11.88017 -11.58415 -11.21362 -11.01511 -10.80488 -10.73771 -10.46090 -10.14583 -9.98974 -9.81626 -9.74514 -9.29502 -9.12032 -8.72005 -8.54359 -7.91109 -6.87582 -5.73950 -3.07582 0.52110 2.25990 2.78388 2.89139 3.40979 3.45951 3.47939 3.50085 3.60172 4.14950 4.52113 4.70082 4.76559 4.85239 5.03392 5.13011 5.15948 5.36318 5.40036 5.48011 5.57591 5.64987 5.66061 5.72411 5.80871 5.85738 5.91726 6.02899 6.06471 6.16210 6.19433 6.56110 6.59477 6.66136 6.70399 6.90381 7.13601 7.26122 7.48440 7.72220 7.76039 7.87634 8.21077 8.47819 9.18030 9.78442 10.42111 11.37937 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002781 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.758530 B =10065.304078 C =10962.896807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.061 0.939 5 C 0.164 3.836 6 N -0.601 5.601 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.107 0.893 18 N -0.714 5.714 19 C 0.550 3.450 20 O -0.547 6.547 21 C -0.237 4.237 22 C 0.021 3.979 23 C 0.008 3.992 24 C -0.145 4.145 25 C -0.208 4.208 26 C 0.011 3.989 27 N -0.545 5.545 28 H 0.417 0.583 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.253 0.747 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.113 0.887 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 -1.106 23.690 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.079 0.921 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.363 5.363 19 C 0.340 3.660 20 O -0.427 6.427 21 C -0.259 4.259 22 C 0.001 3.999 23 C -0.102 4.102 24 C -0.170 4.170 25 C -0.232 4.232 26 C -0.124 4.124 27 N -0.139 5.139 28 H 0.254 0.746 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.228 0.772 38 H 0.131 0.869 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.078 -1.623 23.045 23.306 hybrid contribution -0.704 1.024 -0.783 1.468 sum -3.782 -0.600 22.262 22.589 Atomic orbital electron populations 1.22703 0.81838 1.02029 0.99656 1.87917 1.18992 1.27604 1.95024 1.23847 0.93021 0.83993 0.99497 0.92080 1.21560 0.88158 0.97276 0.89115 1.44261 1.21284 1.66421 1.00868 1.19077 1.05826 1.26745 0.84064 0.90115 1.24844 0.97322 1.00735 0.97357 1.69953 1.18443 1.48334 1.20035 0.86084 0.79290 0.78030 0.82291 1.21469 1.21782 1.20569 1.21828 0.97872 0.93774 0.86184 1.22387 0.96246 1.01098 0.77626 0.87460 1.45862 1.24806 1.58385 1.07237 1.16888 0.83092 0.79338 0.86635 1.90854 1.29841 1.41881 1.80127 1.21767 1.01944 1.08329 0.93908 1.20853 0.97906 0.92541 0.88640 1.18333 0.92351 1.06569 0.92948 1.21555 1.00198 1.03647 0.91586 1.20894 0.97412 1.06196 0.98719 1.22055 1.00447 1.05685 0.84232 1.42204 1.20125 1.44518 1.07067 0.74573 0.90256 0.94945 0.93666 0.91809 0.93597 0.93653 0.96083 0.93100 0.77224 0.86949 0.83097 0.83740 0.84226 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.09 10.44 -35.23 -0.37 -7.45 16 3 C 0.06 1.07 3.09 -24.90 -0.08 0.99 16 4 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 5 C 0.16 4.04 5.16 -3.07 -0.02 4.03 16 6 N -0.60 -15.69 3.39 -170.08 -0.58 -16.27 16 7 C -0.23 -6.50 10.27 -15.06 -0.15 -6.65 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 10 N -0.92 -27.18 10.36 55.49 0.57 -26.61 16 11 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.86 6.93 -2.53 -0.02 2.84 16 16 C 0.13 2.55 3.15 -65.78 -0.21 2.34 16 17 H 0.11 2.39 7.54 -51.93 -0.39 1.99 16 18 N -0.71 -10.75 5.19 -54.64 -0.28 -11.04 16 19 C 0.55 8.59 7.56 -15.01 -0.11 8.48 16 20 O -0.55 -10.82 15.75 5.11 0.08 -10.74 16 21 C -0.24 -2.69 9.39 -39.27 -0.37 -3.06 16 22 C 0.02 0.23 9.40 -39.21 -0.37 -0.14 16 23 C 0.01 0.08 6.74 -83.91 -0.57 -0.49 16 24 C -0.14 -1.32 10.86 -38.98 -0.42 -1.74 16 25 C -0.21 -1.62 10.81 -39.98 -0.43 -2.05 16 26 C 0.01 0.07 11.90 -16.79 -0.20 -0.13 16 27 N -0.54 -3.97 5.94 -10.56 -0.06 -4.03 16 28 H 0.42 2.06 7.87 -40.82 -0.32 1.74 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.39 8.11 -51.93 -0.42 -0.04 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.79 7.22 -51.93 -0.37 1.41 16 33 H 0.05 1.21 7.61 -51.93 -0.40 0.82 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.39 4.61 8.52 -40.82 -0.35 4.26 16 38 H 0.11 0.90 6.93 -52.49 -0.36 0.54 16 39 H 0.15 1.75 7.46 -52.49 -0.39 1.36 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -35.07 355.36 -8.16 -43.23 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.91 Total: 4.48 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.94 Total: 5.73 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.35 Total: -57.95 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.29 Total: -18.20 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.07 -8.16 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212172772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.964 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds