Wall clock time and date at job start Fri Apr 10 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00127 * 2 1 4 4 H 1.08997 * 110.63898 * 26.86319 * 3 2 1 5 5 C 1.54322 * 110.87375 * 263.61107 * 3 2 1 6 6 N 1.47014 * 107.27294 * 219.37163 * 5 3 2 7 7 C 1.36945 * 125.65172 * 178.98713 * 6 5 3 8 8 H 1.07992 * 120.00094 * 174.79208 * 7 6 5 9 9 C 1.38809 * 119.99525 * 354.79028 * 7 6 5 10 10 N 1.31623 * 120.00385 * 7.04895 * 9 7 6 11 11 Si 1.86809 * 119.99864 * 187.05332 * 9 7 6 12 12 H 1.48498 * 109.46772 * 94.98638 * 11 9 7 13 13 H 1.48498 * 109.46915 * 214.98740 * 11 9 7 14 14 H 1.48498 * 109.46957 * 334.98697 * 11 9 7 15 15 C 1.47423 * 108.70396 * 358.94438 * 6 5 3 16 16 C 1.54908 * 104.83221 * 24.12712 * 15 6 5 17 17 H 1.08998 * 111.03799 * 81.08219 * 16 15 6 18 18 N 1.46505 * 111.00251 * 204.92009 * 16 15 6 19 19 C 1.34775 * 119.99996 * 267.19293 * 18 16 15 20 20 O 1.21789 * 119.99769 * 0.02562 * 19 18 16 21 21 C 1.41511 * 120.00275 * 180.02562 * 19 18 16 22 22 C 1.35619 * 120.00223 * 179.97438 * 21 19 18 23 23 C 1.41666 * 120.00074 * 180.27541 * 22 21 19 24 24 C 1.38287 * 126.26019 * 179.41315 * 23 22 21 25 25 C 1.39788 * 107.07851 * 179.84660 * 24 23 22 26 26 C 1.35505 * 107.90967 * 0.42330 * 25 24 23 27 27 N 1.35754 * 108.90981 * 359.73511 * 26 25 24 28 28 H 0.97001 * 125.68825 * 179.97438 * 27 26 25 29 29 H 1.09002 * 109.47524 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47233 * 299.99943 * 1 2 3 31 31 H 1.09006 * 109.47461 * 60.00033 * 1 2 3 32 32 H 1.09001 * 109.88589 * 338.79411 * 5 3 2 33 33 H 1.09005 * 109.88089 * 99.95277 * 5 3 2 34 34 H 0.96996 * 119.99926 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.36767 * 265.28607 * 15 6 5 36 36 H 1.08999 * 110.37241 * 142.96913 * 15 6 5 37 37 H 0.97003 * 119.99770 * 87.20160 * 18 16 15 38 38 H 1.08000 * 119.99926 * 0.02562 * 21 19 18 39 39 H 1.08000 * 119.99844 * 359.97438 * 22 21 19 40 40 H 1.08002 * 126.45983 * 359.97438 * 24 23 22 41 41 H 1.07993 * 126.04545 * 180.18180 * 25 24 23 42 42 H 1.08000 * 125.54866 * 179.76264 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0265 0.4609 5 6 2.3805 1.7425 -1.4330 6 7 3.6668 2.4500 -1.3549 7 6 4.3515 2.9806 -2.4156 8 1 5.2493 3.5561 -2.2453 9 6 3.8916 2.7786 -3.7096 10 7 2.7275 2.1984 -3.9113 11 14 4.9249 3.3301 -5.1649 12 1 5.7390 2.1888 -5.6546 13 1 4.0333 3.8052 -6.2532 14 1 5.8236 4.4346 -4.7436 15 6 4.0971 2.4946 0.0544 16 6 3.3817 1.2957 0.7256 17 1 3.9169 0.3651 0.5369 18 7 3.2165 1.5209 2.1637 19 6 4.1466 1.0686 3.0279 20 8 5.1247 0.4731 2.6131 21 6 3.9868 1.2856 4.4171 22 6 4.9225 0.8300 5.2866 23 6 4.7597 1.0422 6.6778 24 6 5.6223 0.6259 7.6752 25 6 5.0782 1.0487 8.8915 26 6 3.9157 1.6924 8.6266 27 7 3.7104 1.6955 7.2847 28 1 2.9509 2.0915 6.8293 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.4774 0.8665 -2.0744 33 1 1.6137 2.4097 -1.8268 34 1 2.4060 2.0576 -4.8155 35 1 3.7842 3.4306 0.5172 36 1 5.1786 2.3788 0.1248 37 1 2.4376 1.9954 2.4940 38 1 3.1193 1.8134 4.7849 39 1 5.7894 0.3012 4.9189 40 1 6.5438 0.0791 7.5398 41 1 5.5066 0.8871 9.8696 42 1 3.2593 2.1319 9.3631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212172772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:26 Heat of formation + Delta-G solvation = -8.140328 kcal Electronic energy + Delta-G solvation = -24291.293781 eV Core-core repulsion = 20658.706867 eV Total energy + Delta-G solvation = -3632.586914 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01690 -41.10139 -39.68210 -37.53390 -35.62644 -34.81555 -33.67252 -31.98018 -30.75537 -29.67556 -28.56145 -27.53071 -26.22197 -24.58642 -22.35586 -22.10189 -21.72777 -21.22149 -20.64537 -19.10269 -18.74516 -17.93429 -17.72763 -17.19083 -16.49471 -15.96279 -15.89339 -15.82889 -15.33131 -15.16711 -15.05751 -14.83013 -14.65671 -14.39839 -14.05995 -13.64345 -13.29438 -13.22214 -13.20111 -13.00136 -12.91151 -12.78802 -12.58137 -12.32815 -12.07110 -11.89471 -11.64887 -11.29375 -11.10755 -10.77498 -10.60596 -10.08202 -9.87786 -8.98438 -8.59713 -7.90553 -5.27423 -0.31887 1.44025 1.47629 1.55755 1.58173 2.04772 2.17820 2.37048 2.45509 2.57303 2.76970 3.29255 3.52821 3.76913 3.90859 3.94673 4.02373 4.09473 4.34251 4.39400 4.44294 4.46011 4.49225 4.54689 4.58346 4.63412 4.81661 4.85771 4.95274 4.99545 5.17165 5.30521 5.36245 5.38735 5.40183 5.50138 5.63635 5.95569 6.08075 6.11839 6.30673 6.60680 6.66484 7.02735 7.30119 7.67812 8.30971 9.19605 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002781 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.758530 B =10065.304078 C =10962.896807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.098 0.902 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.072 0.928 18 N -0.699 5.699 19 C 0.548 3.452 20 O -0.600 6.600 21 C -0.254 4.254 22 C 0.040 3.960 23 C -0.023 4.023 24 C -0.152 4.152 25 C -0.230 4.230 26 C 0.033 3.967 27 N -0.537 5.537 28 H 0.429 0.571 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.249 0.751 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.416 0.584 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 0.012 26.782 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.377 4.377 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.808 3.192 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.005 3.995 16 C 0.042 3.958 17 H 0.090 0.910 18 N -0.350 5.350 19 C 0.342 3.658 20 O -0.484 6.484 21 C -0.275 4.275 22 C 0.019 3.981 23 C -0.133 4.133 24 C -0.178 4.178 25 C -0.253 4.253 26 C -0.103 4.103 27 N -0.133 5.133 28 H 0.269 0.731 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.346 -0.480 26.174 26.537 hybrid contribution -0.291 0.632 -1.539 1.689 sum -4.637 0.152 24.635 25.068 Atomic orbital electron populations 1.22997 0.79289 1.03890 1.00800 1.87899 1.21824 1.27091 1.94922 1.23497 0.93659 0.85219 0.95846 0.88438 1.21295 0.87105 0.94738 0.92063 1.44531 1.21979 1.66298 1.02199 1.19448 1.06124 1.26868 0.85235 0.89893 1.25708 0.98494 1.01323 0.99980 1.70166 1.19807 1.49453 1.20136 0.85038 0.77730 0.77760 0.78674 1.21630 1.21615 1.19051 1.21928 0.97233 0.95737 0.84605 1.21798 0.95561 0.98284 0.80130 0.90965 1.45575 1.25743 1.58624 1.05067 1.17535 0.82012 0.78072 0.88195 1.90833 1.32029 1.44401 1.81147 1.21615 1.04065 1.10759 0.91087 1.20813 0.96850 0.90801 0.89629 1.18174 0.93986 1.08880 0.92220 1.21883 1.00340 1.03102 0.92432 1.21234 0.98230 1.06890 0.98975 1.22730 0.99970 1.03283 0.84355 1.42248 1.19845 1.43788 1.07389 0.73116 0.88204 0.91620 0.94572 0.96378 0.96030 0.94139 0.93917 0.94775 0.74701 0.83113 0.84840 0.83452 0.82618 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.80 10.44 -148.98 -1.56 -16.35 16 3 C 0.08 2.94 3.09 31.78 0.10 3.03 16 4 H 0.10 3.02 7.68 -2.39 -0.02 3.00 16 5 C 0.17 8.87 5.16 86.73 0.45 9.31 16 6 N -0.62 -33.55 3.39 -692.01 -2.35 -35.90 16 7 C -0.25 -14.46 10.27 84.03 0.86 -13.60 16 8 H 0.08 4.65 7.84 -2.91 -0.02 4.62 16 9 C -0.06 -3.60 5.48 84.86 0.46 -3.14 16 10 N -0.95 -57.98 10.36 21.65 0.22 -57.76 16 11 Si 0.98 46.89 29.56 68.60 2.03 48.92 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.13 5.84 6.93 86.85 0.60 6.44 16 16 C 0.15 5.82 3.15 46.38 0.15 5.97 16 17 H 0.07 3.36 7.54 -2.39 -0.02 3.35 16 18 N -0.70 -20.21 5.19 -444.95 -2.31 -22.51 16 19 C 0.55 16.94 7.56 85.05 0.64 17.58 16 20 O -0.60 -24.64 15.75 -4.63 -0.07 -24.71 16 21 C -0.25 -5.34 9.39 22.47 0.21 -5.13 16 22 C 0.04 0.84 9.40 22.51 0.21 1.05 16 23 C -0.02 -0.40 6.74 39.08 0.26 -0.13 16 24 C -0.15 -2.52 10.86 22.66 0.25 -2.28 16 25 C -0.23 -2.90 10.81 22.01 0.24 -2.66 16 26 C 0.03 0.30 11.90 83.45 0.99 1.29 16 27 N -0.54 -5.97 5.94 -187.33 -1.11 -7.08 16 28 H 0.43 2.49 7.87 -92.71 -0.73 1.76 16 29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 1.33 8.11 -2.38 -0.02 1.31 16 31 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.02 1.07 7.22 -2.39 -0.02 1.05 16 33 H 0.02 1.18 7.61 -2.38 -0.02 1.17 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.42 8.45 8.52 -92.71 -0.79 7.66 16 38 H 0.15 1.88 6.93 -2.91 -0.02 1.86 16 39 H 0.13 3.23 7.46 -2.91 -0.02 3.20 16 40 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -80.93 355.36 1.04 -79.89 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -0.47 Total: 15.84 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.66 Total: 19.66 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.55 Total: -123.25 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.63 Total: -41.06 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.93 1.04 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212172772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.753 kcal (2) G-P(sol) polarization free energy of solvation -80.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds