Wall clock time and date at job start Fri Apr 10 2020 17:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35588 * 118.81292 * 2 1 4 4 C 1.34854 * 121.80581 * 179.97438 * 3 2 1 5 5 C 1.41681 * 119.33635 * 359.80274 * 4 3 2 6 6 O 1.22087 * 121.06807 * 180.21248 * 5 4 3 7 7 C 1.47093 * 117.86362 * 0.41676 * 5 4 3 8 8 C 1.47292 * 120.88103 * 179.82077 * 7 5 4 9 9 O 1.21616 * 119.99829 * 10.52079 * 8 7 5 10 10 N 1.34777 * 119.99429 * 190.52228 * 8 7 5 11 11 C 1.47426 * 125.65456 * 8.25091 * 10 8 7 12 12 C 1.54909 * 104.83106 * 155.91545 * 11 10 8 13 13 C 1.55161 * 101.58308 * 37.01445 * 12 11 10 14 14 C 1.47031 * 125.64248 * 188.30546 * 10 8 7 15 15 H 1.09001 * 110.00884 * 300.50160 * 14 10 8 16 16 C 1.52998 * 109.88146 * 61.59422 * 14 10 8 17 17 N 1.46495 * 109.47652 * 282.48713 * 16 14 10 18 18 C 1.36928 * 120.00451 * 172.48750 * 17 16 14 19 19 H 1.07997 * 120.00137 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00297 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99692 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47136 * 269.99697 * 22 20 18 24 24 H 1.48496 * 109.47360 * 29.99615 * 22 20 18 25 25 H 1.48507 * 109.47337 * 149.99894 * 22 20 18 26 26 C 1.34352 * 118.80060 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46907 * 270.02563 * 1 2 3 28 28 H 1.09004 * 109.46610 * 30.01499 * 1 2 3 29 29 H 1.08997 * 109.47726 * 150.01997 * 1 2 3 30 30 H 1.07998 * 119.09483 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.33593 * 180.02562 * 4 3 2 32 32 H 1.09002 * 110.36240 * 37.07807 * 11 10 8 33 33 H 1.08995 * 110.45986 * 274.80550 * 11 10 8 34 34 H 1.08995 * 111.00728 * 278.93564 * 12 11 10 35 35 H 1.09005 * 111.03496 * 155.09817 * 12 11 10 36 36 H 1.09003 * 110.71773 * 206.13397 * 13 12 11 37 37 H 1.08998 * 110.72094 * 82.85660 * 13 12 11 38 38 H 1.09004 * 109.46656 * 162.48113 * 16 14 10 39 39 H 1.09004 * 109.47201 * 42.48646 * 16 14 10 40 40 H 0.97006 * 119.99327 * 352.48407 * 17 16 14 41 41 H 0.96991 * 119.99646 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.81686 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1184 1.1880 0.0000 4 6 3.4651 1.2584 0.0005 5 6 4.2228 0.0612 0.0053 6 8 5.4434 0.0881 0.0098 7 6 3.4917 -1.2151 0.0001 8 6 4.2128 -2.4994 0.0007 9 8 5.4126 -2.5230 0.1978 10 7 3.5428 -3.6484 -0.2172 11 6 2.1334 -3.7551 -0.6362 12 6 2.0289 -5.1372 -1.3281 13 6 2.9772 -5.9970 -0.4512 14 6 4.0963 -5.0031 -0.0753 15 1 4.9462 -5.1309 -0.7458 16 6 4.5355 -5.2368 1.3715 17 7 5.8155 -4.5645 1.6081 18 6 6.3330 -4.5033 2.8743 19 1 5.7974 -4.9503 3.6988 20 6 7.5455 -3.8658 3.0986 21 7 8.1980 -3.3206 2.0938 22 14 8.2511 -3.7817 4.8261 23 1 7.7633 -2.5520 5.5007 24 1 7.8170 -4.9745 5.5968 25 1 9.7341 -3.7517 4.7542 26 6 2.1122 -1.1773 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.5446 2.1030 0.0004 31 1 3.9612 2.2177 0.0009 32 1 1.8852 -2.9594 -1.3387 33 1 1.4740 -3.7140 0.2307 34 1 2.3861 -5.0872 -2.3566 35 1 1.0083 -5.5181 -1.2892 36 1 3.3798 -6.8327 -1.0236 37 1 2.4612 -6.3522 0.4409 38 1 4.6486 -6.3064 1.5486 39 1 3.7829 -4.8339 2.0493 40 1 6.2963 -4.1628 0.8676 41 1 7.8314 -3.3640 1.1969 42 1 1.5498 -2.0993 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267960812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:32 Heat of formation + Delta-G solvation = 22.900153 kcal Electronic energy + Delta-G solvation = -26100.746644 eV Core-core repulsion = 22469.505746 eV Total energy + Delta-G solvation = -3631.240898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.09604 -39.55059 -37.82229 -36.54297 -34.48841 -32.73728 -32.45444 -31.15764 -30.59137 -28.49308 -27.11660 -25.35168 -24.30760 -22.97727 -22.74891 -21.67740 -20.94334 -19.07808 -17.89531 -17.16466 -16.85607 -16.69378 -16.41058 -15.81926 -15.44580 -14.90502 -14.45585 -13.99308 -13.95180 -13.59960 -13.39403 -13.36901 -13.29379 -13.13492 -12.96955 -12.72857 -12.48572 -12.20781 -12.09228 -11.88832 -11.51258 -11.09850 -10.83805 -10.61347 -10.45674 -10.19648 -9.76584 -9.68239 -9.34354 -8.84773 -8.74878 -8.52542 -8.10450 -7.84592 -6.52073 -5.66141 -2.62938 0.98648 1.37683 2.31343 3.29832 3.45009 3.70091 3.78981 3.91621 4.06336 4.13876 4.24160 4.45073 4.57065 4.62741 4.63497 4.82826 4.85964 4.90164 4.99489 5.11402 5.16066 5.27084 5.37597 5.44638 5.63751 5.67200 5.78454 5.80223 5.93664 5.98408 6.09491 6.21840 6.34202 6.50070 6.53568 6.58830 6.73654 6.84563 7.05679 8.01297 8.15668 8.42086 8.95077 9.25789 9.78236 10.61794 10.77728 11.84635 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.005721 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.653210 B = 4893.480686 C = 6442.928734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.481 5.481 3 C 0.119 3.881 4 C -0.264 4.264 5 C 0.398 3.602 6 O -0.462 6.462 7 C -0.275 4.275 8 C 0.574 3.426 9 O -0.451 6.451 10 N -0.622 5.622 11 C 0.089 3.911 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.131 3.869 15 H 0.073 0.927 16 C 0.154 3.846 17 N -0.733 5.733 18 C -0.338 4.338 19 H 0.054 0.946 20 C -0.042 4.042 21 N -0.936 5.936 22 Si 1.080 2.920 23 H -0.299 1.299 24 H -0.298 1.298 25 H -0.289 1.289 26 C 0.130 3.870 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.382 0.618 41 H 0.267 0.733 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.813 4.590 -9.648 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.169 5.169 3 C -0.004 4.004 4 C -0.289 4.289 5 C 0.282 3.718 6 O -0.340 6.340 7 C -0.286 4.286 8 C 0.362 3.638 9 O -0.319 6.319 10 N -0.361 5.361 11 C -0.034 4.034 12 C -0.170 4.170 13 C -0.162 4.162 14 C 0.027 3.973 15 H 0.091 0.909 16 C 0.024 3.976 17 N -0.384 5.384 18 C -0.470 4.470 19 H 0.072 0.928 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.912 3.088 23 H -0.228 1.228 24 H -0.226 1.226 25 H -0.216 1.216 26 C 0.002 3.998 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.221 0.779 41 H 0.079 0.921 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -24.375 5.181 -8.427 26.306 hybrid contribution -1.641 -0.334 -0.882 1.892 sum -26.016 4.847 -9.308 28.053 Atomic orbital electron populations 1.22399 0.76698 1.05146 1.04116 1.42624 1.08187 1.04529 1.61608 1.21612 0.94260 0.88324 0.96252 1.22500 0.93165 1.01398 1.11824 1.18245 0.89505 0.86988 0.77056 1.90908 1.14114 1.88775 1.40247 1.22612 0.92221 0.97298 1.16498 1.17141 0.86956 0.81236 0.78491 1.90932 1.12815 1.84567 1.43604 1.48412 1.11098 1.05705 1.70873 1.22547 0.84882 0.98257 0.97746 1.22782 1.00232 0.94398 0.99545 1.22635 0.96072 0.97503 0.99982 1.21869 0.95897 0.80523 0.98964 0.90873 1.20909 0.89928 0.95457 0.91262 1.42656 1.20206 1.67332 1.08200 1.19902 1.05640 1.35241 0.86177 0.92832 1.25595 0.94747 0.98192 1.05617 1.70645 1.40592 1.46047 1.00803 0.83271 0.76088 0.75040 0.74389 1.22761 1.22558 1.21563 1.23356 0.94038 0.89583 0.92784 0.90345 0.89207 0.89326 0.82238 0.83108 0.90833 0.91712 0.90536 0.90069 0.90074 0.90347 0.96637 0.96539 0.77855 0.92093 0.80024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.13 10.53 59.84 0.63 0.76 16 2 N -0.48 -3.76 2.97 -124.39 -0.37 -4.13 16 3 C 0.12 1.02 10.17 -17.09 -0.17 0.84 16 4 C -0.26 -3.59 10.01 -39.47 -0.40 -3.98 16 5 C 0.40 8.02 6.96 -34.68 -0.24 7.78 16 6 O -0.46 -12.22 16.47 -14.79 -0.24 -12.46 16 7 C -0.28 -4.97 6.01 -102.71 -0.62 -5.58 16 8 C 0.57 12.63 7.47 -12.58 -0.09 12.53 16 9 O -0.45 -12.94 12.48 -14.37 -0.18 -13.12 16 10 N -0.62 -10.72 3.07 -164.31 -0.50 -11.22 16 11 C 0.09 0.92 4.90 -2.53 -0.01 0.91 16 12 C -0.13 -1.15 7.08 -24.58 -0.17 -1.32 16 13 C -0.12 -1.46 6.43 -24.89 -0.16 -1.62 16 14 C 0.13 2.35 3.01 -66.95 -0.20 2.15 16 15 H 0.07 1.47 8.07 -51.93 -0.42 1.06 16 16 C 0.15 3.53 5.60 -4.05 -0.02 3.51 16 17 N -0.73 -21.80 4.44 -59.91 -0.27 -22.06 16 18 C -0.34 -11.01 9.99 -15.06 -0.15 -11.17 16 19 H 0.05 1.70 7.83 -52.49 -0.41 1.29 16 20 C -0.04 -1.40 5.50 -17.43 -0.10 -1.50 16 21 N -0.94 -33.82 13.70 55.49 0.76 -33.06 16 22 Si 1.08 29.62 29.92 -169.99 -5.09 24.54 16 23 H -0.30 -8.06 7.11 56.52 0.40 -7.65 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 26 C 0.13 1.46 8.56 -16.54 -0.14 1.32 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.09 0.02 7.96 -51.93 -0.41 -0.39 16 29 H 0.09 0.06 7.96 -51.93 -0.41 -0.36 16 30 H 0.16 0.60 7.97 -52.49 -0.42 0.18 16 31 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.07 0.61 6.33 -51.93 -0.33 0.28 16 33 H 0.07 0.55 7.15 -51.93 -0.37 0.18 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 38 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.38 12.14 4.07 -40.82 -0.17 11.97 16 41 H 0.27 9.88 6.77 -40.82 -0.28 9.60 16 42 H 0.18 1.50 3.47 -52.49 -0.18 1.31 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -48.59 338.86 -8.19 -56.78 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.56 Total: 4.99 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.85 Total: 4.64 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.38 Total: -70.47 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.42 Total: -25.58 kcal Atomic # 14 Polarization: 29.62 SS G_CDS: -5.09 Total: 24.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -48.59 -8.19 -56.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267960812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.676 kcal (2) G-P(sol) polarization free energy of solvation -48.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds