Wall clock time and date at job start Fri Apr 10 2020 17:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35588 * 118.81292 * 2 1 4 4 C 1.34854 * 121.80581 * 179.97438 * 3 2 1 5 5 C 1.41681 * 119.33635 * 359.80274 * 4 3 2 6 6 O 1.22087 * 121.06807 * 180.21248 * 5 4 3 7 7 C 1.47093 * 117.86362 * 0.41676 * 5 4 3 8 8 C 1.47292 * 120.88103 * 179.82077 * 7 5 4 9 9 O 1.21616 * 119.99829 * 10.52079 * 8 7 5 10 10 N 1.34777 * 119.99429 * 190.52228 * 8 7 5 11 11 C 1.47426 * 125.65456 * 8.25091 * 10 8 7 12 12 C 1.54909 * 104.83106 * 155.91545 * 11 10 8 13 13 C 1.55161 * 101.58308 * 37.01445 * 12 11 10 14 14 C 1.47031 * 125.64248 * 188.30546 * 10 8 7 15 15 H 1.09001 * 110.00884 * 300.50160 * 14 10 8 16 16 C 1.52998 * 109.88146 * 61.59422 * 14 10 8 17 17 N 1.46495 * 109.47652 * 282.48713 * 16 14 10 18 18 C 1.36928 * 120.00451 * 172.48750 * 17 16 14 19 19 H 1.07997 * 120.00137 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00297 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99692 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47136 * 269.99697 * 22 20 18 24 24 H 1.48496 * 109.47360 * 29.99615 * 22 20 18 25 25 H 1.48507 * 109.47337 * 149.99894 * 22 20 18 26 26 C 1.34352 * 118.80060 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46907 * 270.02563 * 1 2 3 28 28 H 1.09004 * 109.46610 * 30.01499 * 1 2 3 29 29 H 1.08997 * 109.47726 * 150.01997 * 1 2 3 30 30 H 1.07998 * 119.09483 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.33593 * 180.02562 * 4 3 2 32 32 H 1.09002 * 110.36240 * 37.07807 * 11 10 8 33 33 H 1.08995 * 110.45986 * 274.80550 * 11 10 8 34 34 H 1.08995 * 111.00728 * 278.93564 * 12 11 10 35 35 H 1.09005 * 111.03496 * 155.09817 * 12 11 10 36 36 H 1.09003 * 110.71773 * 206.13397 * 13 12 11 37 37 H 1.08998 * 110.72094 * 82.85660 * 13 12 11 38 38 H 1.09004 * 109.46656 * 162.48113 * 16 14 10 39 39 H 1.09004 * 109.47201 * 42.48646 * 16 14 10 40 40 H 0.97006 * 119.99327 * 352.48407 * 17 16 14 41 41 H 0.96991 * 119.99646 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.81686 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1184 1.1880 0.0000 4 6 3.4651 1.2584 0.0005 5 6 4.2228 0.0612 0.0053 6 8 5.4434 0.0881 0.0098 7 6 3.4917 -1.2151 0.0001 8 6 4.2128 -2.4994 0.0007 9 8 5.4126 -2.5230 0.1978 10 7 3.5428 -3.6484 -0.2172 11 6 2.1334 -3.7551 -0.6362 12 6 2.0289 -5.1372 -1.3281 13 6 2.9772 -5.9970 -0.4512 14 6 4.0963 -5.0031 -0.0753 15 1 4.9462 -5.1309 -0.7458 16 6 4.5355 -5.2368 1.3715 17 7 5.8155 -4.5645 1.6081 18 6 6.3330 -4.5033 2.8743 19 1 5.7974 -4.9503 3.6988 20 6 7.5455 -3.8658 3.0986 21 7 8.1980 -3.3206 2.0938 22 14 8.2511 -3.7817 4.8261 23 1 7.7633 -2.5520 5.5007 24 1 7.8170 -4.9745 5.5968 25 1 9.7341 -3.7517 4.7542 26 6 2.1122 -1.1773 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 1.5446 2.1030 0.0004 31 1 3.9612 2.2177 0.0009 32 1 1.8852 -2.9594 -1.3387 33 1 1.4740 -3.7140 0.2307 34 1 2.3861 -5.0872 -2.3566 35 1 1.0083 -5.5181 -1.2892 36 1 3.3798 -6.8327 -1.0236 37 1 2.4612 -6.3522 0.4409 38 1 4.6486 -6.3064 1.5486 39 1 3.7829 -4.8339 2.0493 40 1 6.2963 -4.1628 0.8676 41 1 7.8314 -3.3640 1.1969 42 1 1.5498 -2.0993 0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267960812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:32 Heat of formation + Delta-G solvation = -17.350853 kcal Electronic energy + Delta-G solvation = -26102.492058 eV Core-core repulsion = 22469.505746 eV Total energy + Delta-G solvation = -3632.986312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15925 -40.79345 -39.13919 -38.03355 -36.62241 -34.11603 -33.46522 -32.97601 -31.77272 -30.15492 -27.70009 -26.76095 -25.90644 -24.64869 -24.02539 -23.20935 -21.95544 -20.41978 -19.38918 -18.77873 -18.05735 -17.91250 -17.60474 -17.05991 -16.59988 -16.34139 -15.78658 -15.46426 -15.41603 -15.19961 -15.08753 -14.77428 -14.64386 -14.32389 -14.02073 -13.83279 -13.55510 -13.36730 -13.19065 -12.92280 -12.65620 -12.60769 -12.54587 -12.16913 -11.94069 -11.86613 -11.62106 -11.20521 -10.93663 -10.87904 -10.67750 -10.27117 -9.59809 -9.02627 -8.95762 -8.34460 -5.22828 -0.13603 0.38337 1.45208 1.56403 1.62362 1.75397 1.99972 2.06094 2.72808 2.82984 3.25598 3.46315 3.50994 3.62934 3.68981 3.79148 3.89075 3.96037 4.16470 4.17080 4.26775 4.36912 4.44551 4.46878 4.59622 4.64039 4.70319 4.74006 4.78818 4.83185 4.91474 4.96971 5.07511 5.14563 5.30697 5.37537 5.53106 5.61632 5.74712 5.80773 6.54702 6.66813 7.13918 7.20309 7.54336 8.20523 8.28859 9.18714 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.005721 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.653210 B = 4893.480686 C = 6442.928734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.460 5.460 3 C 0.171 3.829 4 C -0.308 4.308 5 C 0.366 3.634 6 O -0.575 6.575 7 C -0.347 4.347 8 C 0.558 3.442 9 O -0.546 6.546 10 N -0.621 5.621 11 C 0.072 3.928 12 C -0.114 4.114 13 C -0.112 4.112 14 C 0.129 3.871 15 H 0.033 0.967 16 C 0.150 3.850 17 N -0.754 5.754 18 C -0.339 4.339 19 H 0.062 0.938 20 C -0.117 4.117 21 N -0.973 5.973 22 Si 1.136 2.864 23 H -0.292 1.292 24 H -0.261 1.261 25 H -0.290 1.290 26 C 0.191 3.809 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.231 0.769 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.368 0.632 41 H 0.242 0.758 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.752 4.404 -9.447 36.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.143 5.143 3 C 0.045 3.955 4 C -0.331 4.331 5 C 0.259 3.741 6 O -0.464 6.464 7 C -0.358 4.358 8 C 0.348 3.652 9 O -0.422 6.422 10 N -0.358 5.358 11 C -0.048 4.048 12 C -0.151 4.151 13 C -0.151 4.151 14 C 0.025 3.975 15 H 0.051 0.949 16 C 0.022 3.978 17 N -0.402 5.402 18 C -0.470 4.470 19 H 0.079 0.921 20 C -0.308 4.308 21 N -0.620 5.620 22 Si 0.959 3.041 23 H -0.220 1.220 24 H -0.185 1.185 25 H -0.216 1.216 26 C 0.058 3.942 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.137 0.863 30 H 0.248 0.752 31 H 0.171 0.829 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.032 0.968 40 H 0.205 0.795 41 H 0.052 0.948 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -32.554 4.955 -8.256 33.948 hybrid contribution 0.373 -0.271 -1.010 1.110 sum -32.180 4.684 -9.266 33.814 Atomic orbital electron populations 1.23085 0.71487 1.08711 1.06544 1.43450 1.11199 1.03330 1.56293 1.22460 0.92589 0.90674 0.89743 1.22330 0.95381 0.99057 1.16338 1.19321 0.89035 0.90164 0.75584 1.90840 1.18065 1.90234 1.47250 1.22218 0.95042 0.94744 1.23768 1.17990 0.86508 0.83557 0.77099 1.90880 1.16887 1.86119 1.48301 1.48466 1.13910 1.03963 1.69435 1.23127 0.80989 1.00703 1.00000 1.22828 1.01909 0.91985 0.98422 1.22638 0.94366 0.96432 1.01626 1.21849 0.97629 0.83344 0.94688 0.94918 1.21181 0.87029 0.94767 0.94819 1.42999 1.22577 1.67729 1.06915 1.20389 1.05495 1.33522 0.87621 0.92052 1.27468 0.96091 0.98094 1.09098 1.70796 1.41610 1.49176 1.00462 0.82602 0.75253 0.76578 0.69617 1.21993 1.18550 1.21598 1.23711 0.91406 0.92313 0.86782 0.88362 0.85570 0.86292 0.75229 0.82908 0.88038 0.88070 0.90455 0.84980 0.88875 0.88708 0.95712 0.96803 0.79516 0.94751 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.19 10.53 127.77 1.34 1.16 16 2 N -0.46 -4.25 2.97 -547.47 -1.63 -5.87 16 3 C 0.17 2.07 10.17 83.34 0.85 2.92 16 4 C -0.31 -8.56 10.01 22.34 0.22 -8.34 16 5 C 0.37 16.45 6.96 25.45 0.18 16.63 16 6 O -0.58 -35.58 16.47 13.17 0.22 -35.37 16 7 C -0.35 -13.18 6.01 -18.63 -0.11 -13.29 16 8 C 0.56 26.80 7.47 86.62 0.65 27.45 16 9 O -0.55 -35.73 12.48 14.69 0.18 -35.55 16 10 N -0.62 -21.79 3.07 -792.02 -2.43 -24.22 16 11 C 0.07 1.16 4.90 86.85 0.43 1.59 16 12 C -0.11 -1.38 7.08 31.99 0.23 -1.15 16 13 C -0.11 -2.34 6.43 31.79 0.20 -2.13 16 14 C 0.13 4.83 3.01 45.34 0.14 4.96 16 15 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 16 C 0.15 7.18 5.60 86.38 0.48 7.67 16 17 N -0.75 -48.38 4.44 -343.47 -1.53 -49.90 16 18 C -0.34 -23.27 9.99 84.04 0.84 -22.43 16 19 H 0.06 4.01 7.83 -2.91 -0.02 3.98 16 20 C -0.12 -8.27 5.50 84.86 0.47 -7.80 16 21 N -0.97 -76.24 13.70 21.65 0.30 -75.95 16 22 Si 1.14 62.25 29.92 68.60 2.05 64.31 16 23 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 24 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 26 C 0.19 3.55 8.56 84.25 0.72 4.27 16 27 H 0.10 -0.59 8.14 -2.38 -0.02 -0.61 16 28 H 0.13 -1.26 7.96 -2.39 -0.02 -1.28 16 29 H 0.12 -1.07 7.96 -2.39 -0.02 -1.09 16 30 H 0.23 -0.25 7.97 -2.91 -0.02 -0.27 16 31 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.10 1.09 6.33 -2.39 -0.02 1.08 16 33 H 0.10 0.98 7.15 -2.39 -0.02 0.96 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 38 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.37 26.05 4.07 -92.70 -0.38 25.67 16 41 H 0.24 19.92 6.77 -92.71 -0.63 19.29 16 42 H 0.23 2.20 3.47 -2.91 -0.01 2.19 16 Total: -1.00 -135.49 338.86 4.61 -130.88 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.81 Total: 20.17 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.63 Total: 11.50 kcal Atomic # 7 Polarization: -150.66 SS G_CDS: -5.28 Total: -155.95 kcal Atomic # 8 Polarization: -71.32 SS G_CDS: 0.40 Total: -70.92 kcal Atomic # 14 Polarization: 62.25 SS G_CDS: 2.05 Total: 64.31 kcal Total: -135.49 4.61 -130.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267960812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.525 kcal (2) G-P(sol) polarization free energy of solvation -135.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -130.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds