Wall clock time and date at job start Fri Apr 10 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99674 * 2 1 4 4 C 1.50702 * 109.46970 * 269.99569 * 3 2 1 5 5 C 1.38668 * 120.41989 * 270.25530 * 4 3 2 6 6 C 1.38633 * 118.42335 * 180.24586 * 5 4 3 7 7 C 1.38217 * 119.15729 * 359.74600 * 6 5 4 8 8 N 1.31862 * 120.76948 * 0.02562 * 7 6 5 9 9 C 1.31882 * 121.71833 * 0.02562 * 8 7 6 10 10 C 1.34774 * 120.00319 * 179.97438 * 2 1 3 11 11 O 1.21350 * 120.00397 * 176.45239 * 10 2 1 12 12 C 1.49455 * 119.99889 * 356.46223 * 10 2 1 13 13 O 1.21352 * 119.99651 * 5.90538 * 12 10 2 14 14 N 1.34770 * 119.99773 * 185.91434 * 12 10 2 15 15 C 1.46502 * 119.99776 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.47260 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46655 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00031 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99732 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47091 * 120.00190 * 22 20 18 25 25 H 1.48501 * 109.47048 * 240.00118 * 22 20 18 26 26 H 1.09007 * 109.47066 * 95.97791 * 1 2 3 27 27 H 1.08996 * 109.47248 * 215.97489 * 1 2 3 28 28 H 1.08996 * 109.47263 * 335.97919 * 1 2 3 29 29 H 1.09000 * 109.47024 * 149.99760 * 3 2 1 30 30 H 1.08999 * 109.47311 * 29.99674 * 3 2 1 31 31 H 1.08008 * 120.78937 * 359.97041 * 5 4 3 32 32 H 1.07999 * 120.42104 * 179.73040 * 6 5 4 33 33 H 1.08003 * 119.61754 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.61668 * 179.97438 * 9 8 7 35 35 H 0.96994 * 120.00760 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.47042 * 299.99572 * 15 14 12 37 37 H 1.09001 * 109.47503 * 59.99765 * 15 14 12 38 38 H 1.08994 * 109.46545 * 299.99678 * 16 15 14 39 39 H 1.09000 * 109.46628 * 59.99889 * 16 15 14 40 40 H 1.09003 * 109.47395 * 299.99632 * 17 16 15 41 41 H 1.08994 * 109.46974 * 60.00455 * 17 16 15 42 42 H 0.97006 * 120.00358 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.5988 1.3042 -2.0845 6 6 3.7905 1.7327 -3.3889 7 6 2.8331 2.5338 -3.9822 8 7 1.7488 2.8906 -3.3221 9 6 1.5340 2.5026 -2.0801 10 6 2.1389 -1.1671 0.0005 11 8 3.3507 -1.1682 -0.0645 12 6 1.3938 -2.4602 0.0810 13 8 0.1811 -2.4653 0.0377 14 7 2.0688 -3.6204 0.2017 15 6 1.3384 -4.8879 0.2811 16 6 2.3336 -6.0427 0.4122 17 6 1.5707 -7.3663 0.4958 18 6 2.5510 -8.5037 0.6243 19 1 3.6119 -8.3026 0.6448 20 6 2.0934 -9.8010 0.7168 21 7 0.8015 -10.0459 0.6924 22 14 3.3084 -11.2111 0.8754 23 1 4.6927 -10.6736 0.8781 24 1 3.0582 -11.9397 2.1449 25 1 3.1401 -12.1407 -0.2704 26 1 -0.3633 -0.1070 -1.0221 27 1 -0.3633 -0.8316 0.6037 28 1 -0.3633 0.9386 0.4183 29 1 3.1498 1.1385 0.5139 30 1 1.6083 2.0284 0.5138 31 1 4.3301 0.6778 -1.5952 32 1 4.6768 1.4444 -3.9346 33 1 2.9747 2.8715 -4.9983 34 1 0.6341 2.8153 -1.5713 35 1 3.0382 -3.6164 0.2360 36 1 0.6806 -4.8743 1.1502 37 1 0.7439 -5.0220 -0.6226 38 1 2.9910 -6.0561 -0.4570 39 1 2.9284 -5.9088 1.3158 40 1 0.9135 -7.3527 1.3653 41 1 0.9757 -7.5003 -0.4075 42 1 0.4794 -10.9587 0.7571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322506811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:38 Heat of formation + Delta-G solvation = -33.543724 kcal Electronic energy + Delta-G solvation = -23814.302585 eV Core-core repulsion = 20180.614097 eV Total energy + Delta-G solvation = -3633.688488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07672 -40.29105 -38.57822 -36.54129 -35.43570 -33.40183 -33.02757 -32.01028 -31.28242 -28.03820 -27.48471 -26.52201 -24.28083 -23.83853 -22.87488 -21.75921 -20.82064 -19.70503 -17.81201 -17.54047 -17.14288 -16.60485 -16.53840 -16.30642 -15.76948 -15.49758 -15.00270 -14.76392 -14.46815 -14.19345 -13.95396 -13.80620 -13.47260 -13.28937 -13.16904 -12.83403 -12.56264 -12.33120 -11.94781 -11.88619 -11.82231 -11.38774 -10.95048 -10.79596 -10.59670 -10.19184 -9.94105 -9.89026 -9.72913 -9.50523 -9.29400 -9.16907 -9.10890 -8.91979 -8.40650 -6.05138 -4.08146 0.65813 0.94748 1.35285 2.26100 3.12112 3.28423 3.35114 3.36465 3.40167 3.57567 4.06362 4.27205 4.37816 4.41969 4.46276 4.63379 4.67244 4.90186 4.94876 5.15632 5.22766 5.31001 5.39395 5.41589 5.55321 5.65225 5.72124 5.81044 5.88741 5.99099 6.04140 6.29200 6.32769 6.50417 6.65360 6.75407 6.91927 7.24502 7.59139 7.60148 7.62930 7.70393 7.93137 8.00205 8.34326 8.98564 9.56415 11.06158 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.002241 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.891809 B =12490.879606 C =12954.931195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.586 5.586 3 C 0.157 3.843 4 C -0.163 4.163 5 C -0.051 4.051 6 C -0.175 4.175 7 C 0.100 3.900 8 N -0.488 5.488 9 C 0.113 3.887 10 C 0.509 3.491 11 O -0.521 6.521 12 C 0.500 3.500 13 O -0.519 6.519 14 N -0.690 5.690 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 27.176 -3.501 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.035 3.965 4 C -0.166 4.166 5 C -0.077 4.077 6 C -0.195 4.195 7 C -0.057 4.057 8 N -0.197 5.197 9 C -0.045 4.045 10 C 0.291 3.709 11 O -0.396 6.396 12 C 0.281 3.719 13 O -0.397 6.397 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.784 27.528 -3.960 27.868 hybrid contribution 1.629 -1.387 0.366 2.171 sum 3.413 26.140 -3.594 26.606 Atomic orbital electron populations 1.22483 0.77176 1.04410 1.03765 1.47760 1.08398 1.04594 1.71151 1.20425 0.99032 0.84767 0.92320 1.21219 0.96472 1.00439 0.98466 1.21721 0.96489 0.95367 0.94137 1.22218 1.01309 0.99839 0.96124 1.22822 0.89257 0.93861 0.99730 1.67718 1.21180 1.22177 1.08588 1.22670 0.97807 0.93464 0.90521 1.20392 0.87516 0.85354 0.77591 1.90723 1.13486 1.87225 1.48189 1.19952 0.87716 0.85242 0.79021 1.90665 1.13285 1.86530 1.49219 1.46089 1.11688 1.06015 1.70366 1.21854 0.95790 0.80729 1.02439 1.21927 0.97793 0.95124 1.01210 1.19037 0.95517 0.89120 0.97680 1.21232 0.93128 0.91297 1.50380 0.92527 1.25031 0.95161 0.99029 0.95270 1.69971 1.12615 1.20223 1.50474 0.86519 0.81400 0.82307 0.77670 1.19729 1.20987 1.20980 0.92219 0.87020 0.91473 0.88417 0.88581 0.84066 0.84600 0.82721 0.82902 0.75362 0.91037 0.91090 0.92447 0.92439 0.96184 0.96199 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 9.59 59.85 0.57 1.13 16 2 N -0.59 -5.81 2.86 -183.46 -0.52 -6.33 16 3 C 0.16 1.20 5.57 -5.19 -0.03 1.17 16 4 C -0.16 -1.41 5.48 -104.48 -0.57 -1.98 16 5 C -0.05 -0.47 9.79 -39.28 -0.38 -0.85 16 6 C -0.18 -1.43 10.11 -39.44 -0.40 -1.83 16 7 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 8 N -0.49 -4.96 10.36 -13.25 -0.14 -5.09 16 9 C 0.11 0.99 10.86 -17.55 -0.19 0.79 16 10 C 0.51 6.42 7.73 -11.58 -0.09 6.33 16 11 O -0.52 -7.14 15.50 5.50 0.09 -7.06 16 12 C 0.50 7.16 7.77 -11.59 -0.09 7.07 16 13 O -0.52 -8.18 13.14 5.49 0.07 -8.11 16 14 N -0.69 -9.98 5.55 -60.72 -0.34 -10.32 16 15 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 16 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.11 1.19 5.36 -51.94 -0.28 0.91 16 28 H 0.07 0.38 7.83 -51.93 -0.41 -0.03 16 29 H 0.10 0.77 7.43 -51.93 -0.39 0.39 16 30 H 0.10 0.46 7.81 -51.93 -0.41 0.05 16 31 H 0.14 1.32 7.51 -52.48 -0.39 0.93 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.16 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.41 5.42 7.96 -40.82 -0.32 5.10 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -32.63 361.23 -7.74 -40.36 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.96 Total: 1.41 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.09 Total: -0.87 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.26 Total: -47.51 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.16 Total: -15.17 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.63 -7.74 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322506811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.818 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds