Wall clock time and date at job start Fri Apr 10 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99674 * 2 1 4 4 C 1.50702 * 109.46970 * 269.99569 * 3 2 1 5 5 C 1.38668 * 120.41989 * 270.25530 * 4 3 2 6 6 C 1.38633 * 118.42335 * 180.24586 * 5 4 3 7 7 C 1.38217 * 119.15729 * 359.74600 * 6 5 4 8 8 N 1.31862 * 120.76948 * 0.02562 * 7 6 5 9 9 C 1.31882 * 121.71833 * 0.02562 * 8 7 6 10 10 C 1.34774 * 120.00319 * 179.97438 * 2 1 3 11 11 O 1.21350 * 120.00397 * 176.45239 * 10 2 1 12 12 C 1.49455 * 119.99889 * 356.46223 * 10 2 1 13 13 O 1.21352 * 119.99651 * 5.90538 * 12 10 2 14 14 N 1.34770 * 119.99773 * 185.91434 * 12 10 2 15 15 C 1.46502 * 119.99776 * 179.97438 * 14 12 10 16 16 C 1.53005 * 109.47260 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46926 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46655 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00031 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99732 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46909 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47091 * 120.00190 * 22 20 18 25 25 H 1.48501 * 109.47048 * 240.00118 * 22 20 18 26 26 H 1.09007 * 109.47066 * 95.97791 * 1 2 3 27 27 H 1.08996 * 109.47248 * 215.97489 * 1 2 3 28 28 H 1.08996 * 109.47263 * 335.97919 * 1 2 3 29 29 H 1.09000 * 109.47024 * 149.99760 * 3 2 1 30 30 H 1.08999 * 109.47311 * 29.99674 * 3 2 1 31 31 H 1.08008 * 120.78937 * 359.97041 * 5 4 3 32 32 H 1.07999 * 120.42104 * 179.73040 * 6 5 4 33 33 H 1.08003 * 119.61754 * 180.02562 * 7 6 5 34 34 H 1.08005 * 119.61668 * 179.97438 * 9 8 7 35 35 H 0.96994 * 120.00760 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.47042 * 299.99572 * 15 14 12 37 37 H 1.09001 * 109.47503 * 59.99765 * 15 14 12 38 38 H 1.08994 * 109.46545 * 299.99678 * 16 15 14 39 39 H 1.09000 * 109.46628 * 59.99889 * 16 15 14 40 40 H 1.09003 * 109.47395 * 299.99632 * 17 16 15 41 41 H 1.08994 * 109.46974 * 60.00455 * 17 16 15 42 42 H 0.97006 * 120.00358 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 3.5988 1.3042 -2.0845 6 6 3.7905 1.7327 -3.3889 7 6 2.8331 2.5338 -3.9822 8 7 1.7488 2.8906 -3.3221 9 6 1.5340 2.5026 -2.0801 10 6 2.1389 -1.1671 0.0005 11 8 3.3507 -1.1682 -0.0645 12 6 1.3938 -2.4602 0.0810 13 8 0.1811 -2.4653 0.0377 14 7 2.0688 -3.6204 0.2017 15 6 1.3384 -4.8879 0.2811 16 6 2.3336 -6.0427 0.4122 17 6 1.5707 -7.3663 0.4958 18 6 2.5510 -8.5037 0.6243 19 1 3.6119 -8.3026 0.6448 20 6 2.0934 -9.8010 0.7168 21 7 0.8015 -10.0459 0.6924 22 14 3.3084 -11.2111 0.8754 23 1 4.6927 -10.6736 0.8781 24 1 3.0582 -11.9397 2.1449 25 1 3.1401 -12.1407 -0.2704 26 1 -0.3633 -0.1070 -1.0221 27 1 -0.3633 -0.8316 0.6037 28 1 -0.3633 0.9386 0.4183 29 1 3.1498 1.1385 0.5139 30 1 1.6083 2.0284 0.5138 31 1 4.3301 0.6778 -1.5952 32 1 4.6768 1.4444 -3.9346 33 1 2.9747 2.8715 -4.9983 34 1 0.6341 2.8153 -1.5713 35 1 3.0382 -3.6164 0.2360 36 1 0.6806 -4.8743 1.1502 37 1 0.7439 -5.0220 -0.6226 38 1 2.9910 -6.0561 -0.4570 39 1 2.9284 -5.9088 1.3158 40 1 0.9135 -7.3527 1.3653 41 1 0.9757 -7.5003 -0.4075 42 1 0.4794 -10.9587 0.7571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322506811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:38 Heat of formation + Delta-G solvation = -55.277364 kcal Electronic energy + Delta-G solvation = -23815.245026 eV Core-core repulsion = 20180.614097 eV Total energy + Delta-G solvation = -3634.630929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00696 -41.04404 -39.63286 -37.56708 -36.71681 -35.20650 -33.74125 -33.04918 -32.64573 -29.14444 -28.56192 -27.64889 -25.65271 -24.50181 -24.08019 -22.70082 -22.38175 -20.85547 -18.85502 -18.50148 -18.26618 -17.94820 -17.45590 -17.19247 -16.84009 -16.56774 -16.44672 -15.98980 -15.80918 -15.21294 -14.97103 -14.59725 -14.35931 -14.29502 -13.96417 -13.92996 -13.78627 -13.61674 -13.47034 -13.20155 -12.78999 -12.59722 -12.53835 -12.38943 -12.29830 -11.71014 -11.54878 -11.21392 -10.88432 -10.57070 -10.56076 -10.48808 -10.30618 -10.04635 -9.82068 -8.20210 -6.30975 0.01593 0.28955 0.31262 1.30564 1.41264 1.41964 1.54792 2.05813 2.39345 2.45624 2.88893 3.13837 3.26978 3.50172 3.78960 3.82880 4.03061 4.04776 4.07866 4.17626 4.29188 4.39384 4.51835 4.56475 4.63486 4.68393 4.82633 4.84240 4.91002 5.05641 5.14227 5.16999 5.18432 5.28169 5.36522 5.51376 5.70133 5.72394 5.83954 5.84145 6.16023 6.23543 6.62912 6.86202 6.89218 6.97314 7.38477 8.91879 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.002241 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.891809 B =12490.879606 C =12954.931195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.576 5.576 3 C 0.157 3.843 4 C -0.167 4.167 5 C -0.067 4.067 6 C -0.178 4.178 7 C 0.091 3.909 8 N -0.514 5.514 9 C 0.108 3.892 10 C 0.509 3.491 11 O -0.535 6.535 12 C 0.498 3.502 13 O -0.536 6.536 14 N -0.687 5.687 15 C 0.129 3.871 16 C -0.106 4.106 17 C 0.025 3.975 18 C -0.541 4.541 19 H 0.064 0.936 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.280 1.280 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.418 0.582 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.067 0.933 40 H -0.003 1.003 41 H -0.005 1.005 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 28.569 -3.416 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.308 5.308 3 C 0.035 3.965 4 C -0.170 4.170 5 C -0.094 4.094 6 C -0.198 4.198 7 C -0.065 4.065 8 N -0.223 5.223 9 C -0.050 4.050 10 C 0.291 3.709 11 O -0.413 6.413 12 C 0.279 3.721 13 O -0.414 6.414 14 N -0.340 5.340 15 C 0.006 3.994 16 C -0.143 4.143 17 C -0.013 4.013 18 C -0.579 4.579 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.206 1.206 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.815 28.964 -3.876 29.357 hybrid contribution 1.264 -1.745 0.314 2.177 sum 4.079 27.219 -3.562 27.752 Atomic orbital electron populations 1.22504 0.76320 1.05751 1.03231 1.47855 1.08998 1.04514 1.69408 1.20663 0.99468 0.84225 0.92133 1.21307 0.96347 1.00514 0.98859 1.21866 0.96916 0.95753 0.94828 1.22454 1.01948 0.99448 0.95933 1.23230 0.88930 0.93686 1.00680 1.67750 1.22032 1.23079 1.09434 1.23049 0.98499 0.93130 0.90280 1.20038 0.87221 0.85420 0.78249 1.90721 1.13821 1.87333 1.49411 1.20350 0.87628 0.85818 0.78277 1.90675 1.14083 1.86959 1.49705 1.45901 1.11963 1.05409 1.70683 1.21455 0.95006 0.81147 1.01820 1.21634 0.97608 0.93049 1.02054 1.18937 0.95139 0.91827 0.95403 1.21701 0.93920 0.92356 1.49884 0.91810 1.25984 0.97009 1.02094 0.94913 1.70102 1.14685 1.20978 1.51583 0.85396 0.79313 0.78637 0.77675 1.18451 1.20508 1.20563 0.92891 0.88987 0.87545 0.88709 0.84919 0.84692 0.82736 0.80636 0.80631 0.74491 0.91556 0.91965 0.91648 0.91419 0.98443 0.98615 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 9.59 127.77 1.23 2.20 16 2 N -0.58 -10.35 2.86 -852.71 -2.44 -12.79 16 3 C 0.16 2.01 5.57 85.63 0.48 2.48 16 4 C -0.17 -2.61 5.48 -19.77 -0.11 -2.72 16 5 C -0.07 -1.17 9.79 22.47 0.22 -0.95 16 6 C -0.18 -2.69 10.11 22.36 0.23 -2.47 16 7 C 0.09 1.44 11.18 84.68 0.95 2.38 16 8 N -0.51 -9.68 10.36 -195.84 -2.03 -11.71 16 9 C 0.11 1.66 10.86 84.67 0.92 2.58 16 10 C 0.51 12.33 7.73 87.27 0.67 13.00 16 11 O -0.54 -14.22 15.50 -3.25 -0.05 -14.27 16 12 C 0.50 14.03 7.77 87.27 0.68 14.70 16 13 O -0.54 -16.79 13.14 -3.25 -0.04 -16.83 16 14 N -0.69 -19.54 5.55 -464.39 -2.58 -22.12 16 15 C 0.13 4.30 5.67 86.38 0.49 4.79 16 16 C -0.11 -4.01 5.27 30.60 0.16 -3.84 16 17 C 0.02 1.25 4.97 29.85 0.15 1.40 16 18 C -0.54 -29.96 9.11 25.60 0.23 -29.72 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 21 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 22 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 1.87 5.36 -2.47 -0.01 1.85 16 28 H 0.11 0.81 7.83 -2.39 -0.02 0.79 16 29 H 0.09 1.32 7.43 -2.39 -0.02 1.31 16 30 H 0.13 0.73 7.81 -2.39 -0.02 0.72 16 31 H 0.14 2.47 7.51 -2.91 -0.02 2.44 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.42 10.68 7.96 -92.71 -0.74 9.94 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -70.69 361.23 2.23 -68.46 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.29 Total: 15.37 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.76 Total: 4.18 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -6.76 Total: -102.62 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.09 Total: -31.10 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.69 2.23 -68.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322506811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.184 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds