Wall clock time and date at job start Fri Apr 10 2020 17:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46497 * 109.46983 * 239.99955 * 2 1 3 5 5 C 1.34779 * 120.00301 * 85.00062 * 4 2 1 6 6 O 1.21285 * 119.99293 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00371 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47447 * 179.97438 * 7 5 4 9 9 C 1.35767 * 119.62248 * 89.99496 * 8 7 5 10 10 C 1.35350 * 120.70033 * 179.97438 * 9 8 7 11 11 C 1.40198 * 119.95033 * 0.02804 * 10 9 8 12 12 C 1.36398 * 119.26142 * 359.97438 * 11 10 9 13 13 C 1.34656 * 119.62534 * 269.73589 * 8 7 5 14 14 O 1.22063 * 119.98868 * 359.96926 * 13 8 7 15 15 C 1.53007 * 109.47225 * 120.00125 * 2 1 3 16 16 C 1.53497 * 114.20425 * 299.99697 * 15 2 1 17 17 N 1.47062 * 87.98453 * 220.14915 * 16 15 2 18 18 C 1.36943 * 136.05579 * 207.08745 * 17 16 15 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99622 * 180.27778 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47067 * 87.88602 * 27.34481 * 17 16 15 27 27 H 1.09010 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47235 * 299.99957 * 1 2 3 29 29 H 1.08994 * 109.47326 * 60.00500 * 1 2 3 30 30 H 0.97000 * 119.99936 * 264.99787 * 4 2 1 31 31 H 1.08999 * 109.47230 * 299.99841 * 7 5 4 32 32 H 1.08999 * 109.47208 * 59.99900 * 7 5 4 33 33 H 1.07999 * 119.64661 * 0.02562 * 9 8 7 34 34 H 1.07999 * 120.02239 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.36694 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.34627 * 180.02562 * 12 11 10 37 37 H 1.08994 * 113.28303 * 73.06545 * 15 2 1 38 38 H 1.09000 * 113.46436 * 105.36543 * 16 15 2 39 39 H 1.08997 * 113.51966 * 334.94328 * 16 15 2 40 40 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 41 41 H 1.08994 * 113.46653 * 87.43736 * 26 17 16 42 42 H 1.08996 * 113.46465 * 217.87717 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5874 8 7 2.6984 0.2126 -4.7091 9 6 3.8290 0.9296 -4.9349 10 6 3.8980 1.8048 -5.9652 11 6 2.7938 1.9779 -6.8116 12 6 1.6589 1.2567 -6.5830 13 6 1.6232 0.3527 -5.5075 14 8 0.6158 -0.3029 -5.2949 15 6 2.0400 -0.7213 1.2493 16 6 1.5899 -0.0846 2.5714 17 7 2.9375 -0.3491 3.0975 18 6 3.4887 -0.5678 4.3319 19 1 2.8617 -0.5662 5.2112 20 6 4.8543 -0.7852 4.4535 21 7 5.6185 -0.7866 3.3819 22 14 5.6074 -1.0758 6.1381 23 1 5.6005 -2.5300 6.4391 24 1 7.0052 -0.5746 6.1485 25 1 4.8150 -0.3538 7.1658 26 6 3.4336 -0.2688 1.7154 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.2490 -1.6318 -1.1526 31 1 3.6492 -1.1203 -3.3979 32 1 1.9777 -1.5509 -3.8325 33 1 4.6825 0.7998 -4.2861 34 1 4.8029 2.3692 -6.1350 35 1 2.8413 2.6747 -7.6353 36 1 0.7982 1.3759 -7.2243 37 1 1.9087 -1.8024 1.2063 38 1 0.8072 -0.6475 3.0799 39 1 1.3577 0.9769 2.4862 40 1 6.5726 -0.9389 3.4669 41 1 3.6879 0.7441 1.4036 42 1 4.2217 -0.9887 1.4947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755391088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:23 Heat of formation + Delta-G solvation = 27.143483 kcal Electronic energy + Delta-G solvation = -24646.262885 eV Core-core repulsion = 21015.205992 eV Total energy + Delta-G solvation = -3631.056893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61276 -39.67558 -38.22612 -37.01109 -35.04363 -34.58412 -32.31368 -30.86937 -30.04635 -28.28454 -27.58254 -24.80158 -24.17679 -23.95976 -23.05639 -21.51903 -20.46751 -19.30203 -17.83686 -17.48826 -17.39008 -16.82661 -16.54614 -15.92782 -15.34348 -15.13287 -14.89460 -14.75704 -14.27757 -13.97047 -13.87068 -13.47067 -13.27138 -12.71680 -12.48880 -12.46954 -12.13748 -12.09781 -11.97312 -11.73397 -11.39805 -11.28038 -10.96314 -10.83680 -10.66776 -10.40644 -10.11616 -10.03921 -9.81553 -9.72219 -9.26014 -8.90346 -8.85937 -8.14933 -6.92487 -5.81683 -3.13927 0.64681 1.73054 2.28598 2.55956 3.16494 3.35906 3.40878 3.42742 3.59357 4.34720 4.40876 4.41276 4.59429 4.67377 4.85733 4.98635 5.06446 5.07639 5.15069 5.22517 5.29185 5.50454 5.65648 5.73356 5.76317 5.85556 5.92018 6.00918 6.07643 6.19997 6.29880 6.34706 6.39345 6.50356 6.61147 6.74229 6.87553 7.16199 7.29284 7.49341 7.51601 7.88138 7.93055 8.19415 8.99351 9.65814 10.59484 11.35900 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.002832 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.527656 B = 9882.987641 C =10621.756155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.087 0.913 4 N -0.711 5.711 5 C 0.501 3.499 6 O -0.531 6.531 7 C 0.068 3.932 8 N -0.478 5.478 9 C 0.146 3.854 10 C -0.236 4.236 11 C -0.014 4.014 12 C -0.245 4.245 13 C 0.519 3.481 14 O -0.553 6.553 15 C -0.153 4.153 16 C 0.130 3.870 17 N -0.611 5.611 18 C -0.217 4.217 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.164 3.836 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.401 0.599 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.034 0.966 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 0.953 -19.618 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.285 3.715 6 O -0.408 6.408 7 C -0.058 4.058 8 N -0.188 5.188 9 C 0.019 3.981 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.267 4.267 13 C 0.322 3.678 14 O -0.436 6.436 15 C -0.173 4.173 16 C 0.003 3.997 17 N -0.337 5.337 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.038 3.962 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.236 0.764 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.756 1.297 -19.207 19.614 hybrid contribution 0.728 -0.359 0.977 1.270 sum -3.028 0.937 -18.230 18.504 Atomic orbital electron populations 1.22127 0.95487 1.01925 1.02159 1.21033 0.93611 0.97373 0.82875 0.89467 1.46010 1.66656 1.14151 1.09439 1.20562 0.78567 0.87735 0.84633 1.90745 1.49636 1.15747 1.84636 1.21856 1.05791 0.93213 0.84949 1.45039 1.13377 1.35154 1.25253 1.21987 0.89292 0.90471 0.96371 1.20631 1.01516 1.04593 0.99153 1.21433 0.91716 0.94238 0.96223 1.22070 1.01141 1.02318 1.01161 1.17141 0.82314 0.84897 0.83496 1.90953 1.30066 1.48751 1.73804 1.23686 1.01532 0.99766 0.92292 1.22312 0.90213 0.96797 0.90386 1.45573 1.02950 1.82164 1.02966 1.18950 0.91155 1.41527 0.82822 0.90090 1.24797 0.95855 1.02343 0.97518 1.69819 1.04566 1.55526 1.26872 0.86099 0.78534 0.77912 0.83095 1.21481 1.21613 1.20650 1.22147 0.92510 0.97852 0.83717 0.92598 0.91348 0.92757 0.76430 0.85832 0.85284 0.82036 0.83691 0.84872 0.83565 0.88954 0.94051 0.94860 0.93677 0.95877 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.29 37.16 0.35 -1.86 16 2 C 0.16 2.35 2.48 -67.93 -0.17 2.18 16 3 H 0.09 1.53 7.34 -51.93 -0.38 1.14 16 4 N -0.71 -9.04 5.08 -53.81 -0.27 -9.31 16 5 C 0.50 6.83 7.86 -10.99 -0.09 6.74 16 6 O -0.53 -9.49 16.09 5.55 0.09 -9.40 16 7 C 0.07 0.67 5.82 -5.20 -0.03 0.64 16 8 N -0.48 -5.37 2.07 -121.07 -0.25 -5.63 16 9 C 0.15 1.24 10.28 -16.84 -0.17 1.07 16 10 C -0.24 -1.77 10.01 -39.88 -0.40 -2.17 16 11 C -0.01 -0.12 10.10 -39.51 -0.40 -0.51 16 12 C -0.25 -2.68 9.99 -39.38 -0.39 -3.08 16 13 C 0.52 7.18 7.40 -15.45 -0.11 7.07 16 14 O -0.55 -9.60 16.63 4.86 0.08 -9.52 16 15 C -0.15 -2.65 3.66 -89.97 -0.33 -2.98 16 16 C 0.13 2.59 7.33 -8.51 -0.06 2.53 16 17 N -0.61 -15.51 3.78 -184.61 -0.70 -16.21 16 18 C -0.22 -6.06 10.75 -15.06 -0.16 -6.22 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.87 11.50 55.49 0.64 -26.23 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.16 3.70 6.99 -8.37 -0.06 3.64 16 27 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.92 7.49 -51.93 -0.39 0.53 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 31 H 0.12 0.72 8.01 -51.93 -0.42 0.30 16 32 H 0.13 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.16 0.91 8.04 -52.49 -0.42 0.49 16 34 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.66 8.11 -51.93 -0.42 0.23 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 42 H 0.07 1.75 7.12 -51.93 -0.37 1.38 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -37.36 356.38 -8.24 -45.60 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.05 Total: 1.75 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.13 Total: 6.71 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.58 Total: -57.37 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.17 Total: -18.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.36 -8.24 -45.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755391088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.742 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds