Wall clock time and date at job start Fri Apr 10 2020 17:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47404 * 2 1 4 4 N 1.46497 * 109.46983 * 239.99955 * 2 1 3 5 5 C 1.34779 * 120.00301 * 85.00062 * 4 2 1 6 6 O 1.21285 * 119.99293 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00371 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47447 * 179.97438 * 7 5 4 9 9 C 1.35767 * 119.62248 * 89.99496 * 8 7 5 10 10 C 1.35350 * 120.70033 * 179.97438 * 9 8 7 11 11 C 1.40198 * 119.95033 * 0.02804 * 10 9 8 12 12 C 1.36398 * 119.26142 * 359.97438 * 11 10 9 13 13 C 1.34656 * 119.62534 * 269.73589 * 8 7 5 14 14 O 1.22063 * 119.98868 * 359.96926 * 13 8 7 15 15 C 1.53007 * 109.47225 * 120.00125 * 2 1 3 16 16 C 1.53497 * 114.20425 * 299.99697 * 15 2 1 17 17 N 1.47062 * 87.98453 * 220.14915 * 16 15 2 18 18 C 1.36943 * 136.05579 * 207.08745 * 17 16 15 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99622 * 180.27778 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.47067 * 87.88602 * 27.34481 * 17 16 15 27 27 H 1.09010 * 109.46870 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47235 * 299.99957 * 1 2 3 29 29 H 1.08994 * 109.47326 * 60.00500 * 1 2 3 30 30 H 0.97000 * 119.99936 * 264.99787 * 4 2 1 31 31 H 1.08999 * 109.47230 * 299.99841 * 7 5 4 32 32 H 1.08999 * 109.47208 * 59.99900 * 7 5 4 33 33 H 1.07999 * 119.64661 * 0.02562 * 9 8 7 34 34 H 1.07999 * 120.02239 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.36694 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.34627 * 180.02562 * 12 11 10 37 37 H 1.08994 * 113.28303 * 73.06545 * 15 2 1 38 38 H 1.09000 * 113.46436 * 105.36543 * 16 15 2 39 39 H 1.08997 * 113.51966 * 334.94328 * 16 15 2 40 40 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 41 41 H 1.08994 * 113.46653 * 87.43736 * 26 17 16 42 42 H 1.08996 * 113.46465 * 217.87717 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8581 1.1584 -2.4117 7 6 2.6498 -0.7285 -3.5874 8 7 2.6984 0.2126 -4.7091 9 6 3.8290 0.9296 -4.9349 10 6 3.8980 1.8048 -5.9652 11 6 2.7938 1.9779 -6.8116 12 6 1.6589 1.2567 -6.5830 13 6 1.6232 0.3527 -5.5075 14 8 0.6158 -0.3029 -5.2949 15 6 2.0400 -0.7213 1.2493 16 6 1.5899 -0.0846 2.5714 17 7 2.9375 -0.3491 3.0975 18 6 3.4887 -0.5678 4.3319 19 1 2.8617 -0.5662 5.2112 20 6 4.8543 -0.7852 4.4535 21 7 5.6185 -0.7866 3.3819 22 14 5.6074 -1.0758 6.1381 23 1 5.6005 -2.5300 6.4391 24 1 7.0052 -0.5746 6.1485 25 1 4.8150 -0.3538 7.1658 26 6 3.4336 -0.2688 1.7154 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.2490 -1.6318 -1.1526 31 1 3.6492 -1.1203 -3.3979 32 1 1.9777 -1.5509 -3.8325 33 1 4.6825 0.7998 -4.2861 34 1 4.8029 2.3692 -6.1350 35 1 2.8413 2.6747 -7.6353 36 1 0.7982 1.3759 -7.2243 37 1 1.9087 -1.8024 1.2063 38 1 0.8072 -0.6475 3.0799 39 1 1.3577 0.9769 2.4862 40 1 6.5726 -0.9389 3.4669 41 1 3.6879 0.7441 1.4036 42 1 4.2217 -0.9887 1.4947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755391088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:21 Heat of formation + Delta-G solvation = 0.804540 kcal Electronic energy + Delta-G solvation = -24647.405027 eV Core-core repulsion = 21015.205992 eV Total energy + Delta-G solvation = -3632.199036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.46652 -40.92076 -39.74006 -37.93717 -36.31475 -35.45196 -34.23401 -32.16798 -30.81628 -29.52199 -29.07992 -26.45034 -25.70771 -24.86146 -24.03746 -22.91030 -21.62660 -20.81885 -18.85715 -18.62607 -18.43209 -18.27733 -17.47025 -17.01472 -16.91623 -16.37348 -16.16680 -15.77111 -15.51128 -15.22207 -15.05341 -14.77657 -14.66132 -14.16393 -13.68328 -13.37995 -13.30465 -13.15686 -13.03007 -12.97178 -12.93152 -12.73704 -12.69875 -12.63369 -12.05091 -11.76673 -11.60787 -11.50753 -11.08096 -11.02454 -10.90432 -10.72223 -10.11519 -8.96053 -8.93382 -7.92129 -5.25707 -0.07147 0.95404 1.45907 1.47635 1.48739 1.50346 1.56157 2.17852 2.46533 2.76337 3.29740 3.39309 3.57769 3.70608 3.73485 3.81028 3.96268 4.06711 4.18154 4.25656 4.26637 4.38661 4.44651 4.54191 4.54651 4.74244 4.78313 4.81934 4.95702 5.03234 5.07301 5.20140 5.23629 5.27862 5.40553 5.44185 5.52580 5.63872 5.66168 5.92348 6.07575 6.47832 6.90190 6.97508 7.16122 7.58549 8.59288 9.25310 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025230 B = 0.002832 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.527656 B = 9882.987641 C =10621.756155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 H 0.062 0.938 4 N -0.704 5.704 5 C 0.499 3.501 6 O -0.578 6.578 7 C 0.071 3.929 8 N -0.481 5.481 9 C 0.132 3.868 10 C -0.231 4.231 11 C 0.007 3.993 12 C -0.283 4.283 13 C 0.498 3.502 14 O -0.610 6.610 15 C -0.111 4.111 16 C 0.128 3.872 17 N -0.644 5.644 18 C -0.232 4.232 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.980 3.020 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.162 3.838 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.417 0.583 31 H 0.171 0.829 32 H 0.133 0.867 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.249 0.751 41 H 0.005 0.995 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 0.762 -20.045 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.060 3.940 3 H 0.080 0.920 4 N -0.356 5.356 5 C 0.285 3.715 6 O -0.458 6.458 7 C -0.054 4.054 8 N -0.190 5.190 9 C 0.006 3.994 10 C -0.253 4.253 11 C -0.015 4.015 12 C -0.305 4.305 13 C 0.304 3.696 14 O -0.498 6.498 15 C -0.131 4.131 16 C 0.002 3.998 17 N -0.370 5.370 18 C -0.360 4.360 19 H 0.102 0.898 20 C -0.260 4.260 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.037 3.963 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.254 0.746 31 H 0.188 0.812 32 H 0.151 0.849 33 H 0.211 0.789 34 H 0.198 0.802 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.963 1.093 -19.642 19.894 hybrid contribution 0.544 -0.203 1.079 1.225 sum -2.419 0.890 -18.563 18.741 Atomic orbital electron populations 1.22046 0.94021 1.03002 1.01812 1.20716 0.94517 0.95888 0.82859 0.91993 1.45878 1.66213 1.14837 1.08637 1.21203 0.77523 0.87258 0.85535 1.90722 1.51668 1.17943 1.85432 1.22024 1.08230 0.92458 0.82730 1.45094 1.13559 1.35417 1.24886 1.22689 0.89193 0.90224 0.97340 1.21176 1.02397 1.03743 0.98011 1.21877 0.90392 0.92804 0.96393 1.22128 1.02877 1.03846 1.01617 1.17631 0.82335 0.85157 0.84503 1.90897 1.32115 1.51225 1.75579 1.23312 0.97021 1.00508 0.92276 1.22480 0.88509 0.97543 0.91281 1.45974 1.05555 1.82416 1.03068 1.19344 0.91675 1.40763 0.84207 0.89774 1.25639 0.96391 1.02838 1.01083 1.69995 1.04378 1.56844 1.28750 0.85060 0.77190 0.77865 0.79087 1.20884 1.22081 1.19607 1.22081 0.94594 0.96290 0.83384 0.90767 0.90740 0.94086 0.74550 0.81208 0.84941 0.78948 0.80197 0.81347 0.83631 0.87287 0.92349 0.94269 0.94203 0.97723 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.29 71.98 0.67 -3.31 16 2 C 0.17 4.87 2.48 44.99 0.11 4.98 16 3 H 0.06 2.19 7.34 -2.39 -0.02 2.17 16 4 N -0.70 -17.07 5.08 -442.53 -2.25 -19.31 16 5 C 0.50 13.30 7.86 87.65 0.69 13.99 16 6 O -0.58 -20.86 16.09 -3.04 -0.05 -20.91 16 7 C 0.07 1.29 5.82 85.63 0.50 1.79 16 8 N -0.48 -10.37 2.07 -655.08 -1.36 -11.73 16 9 C 0.13 1.92 10.28 83.42 0.86 2.78 16 10 C -0.23 -2.72 10.01 22.08 0.22 -2.50 16 11 C 0.01 0.10 10.10 22.32 0.23 0.32 16 12 C -0.28 -6.22 9.99 22.40 0.22 -5.99 16 13 C 0.50 14.12 7.40 84.82 0.63 14.75 16 14 O -0.61 -22.36 16.63 -5.52 -0.09 -22.45 16 15 C -0.11 -3.73 3.66 -10.37 -0.04 -3.77 16 16 C 0.13 4.94 7.33 83.18 0.61 5.55 16 17 N -0.64 -32.70 3.78 -737.98 -2.79 -35.49 16 18 C -0.23 -12.93 10.75 84.03 0.90 -12.03 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 20 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 21 N -0.95 -56.32 11.50 21.65 0.25 -56.07 16 22 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.16 7.42 6.99 83.27 0.58 8.00 16 27 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 1.87 7.49 -2.38 -0.02 1.85 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.42 7.48 8.60 -92.71 -0.80 6.68 16 31 H 0.17 1.45 8.01 -2.39 -0.02 1.43 16 32 H 0.13 2.41 7.38 -2.39 -0.02 2.39 16 33 H 0.19 1.48 8.04 -2.91 -0.02 1.46 16 34 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.50 8.11 -2.39 -0.02 1.48 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.01 0.24 7.94 -2.39 -0.02 0.23 16 42 H 0.04 2.24 7.12 -2.39 -0.02 2.23 16 Total: -1.00 -85.20 356.38 2.62 -82.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.23 Total: 15.00 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 6.65 Total: 21.29 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.15 Total: -122.60 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.14 Total: -43.36 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -85.20 2.62 -82.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755391088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.390 kcal (2) G-P(sol) polarization free energy of solvation -85.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds