Wall clock time and date at job start Fri Apr 10 2020 17:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46958 * 2 1 4 4 C 1.53004 * 109.47282 * 240.00107 * 2 1 3 5 5 N 1.46496 * 109.46839 * 294.44190 * 4 2 1 6 6 S 1.65604 * 119.99695 * 162.95903 * 5 4 2 7 7 O 1.42102 * 106.39995 * 180.33915 * 6 5 4 8 8 O 1.42103 * 106.40004 * 313.25973 * 6 5 4 9 9 N 1.65599 * 107.22071 * 66.80065 * 6 5 4 10 10 C 1.46499 * 119.99790 * 91.06318 * 9 6 5 11 11 C 1.46495 * 120.00029 * 271.06620 * 9 6 5 12 12 C 1.50701 * 109.47416 * 100.71318 * 11 9 6 13 13 H 1.08003 * 120.00025 * 4.42832 * 12 11 9 14 14 C 1.37873 * 120.00135 * 184.42604 * 12 11 9 15 15 N 1.31514 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47117 * 89.99969 * 16 14 12 18 18 H 1.48493 * 109.47235 * 210.00143 * 16 14 12 19 19 H 1.48505 * 109.47034 * 329.99809 * 16 14 12 20 20 N 1.46902 * 109.47196 * 119.99848 * 2 1 3 21 21 C 1.48531 * 110.99795 * 178.13244 * 20 2 1 22 22 C 1.54941 * 103.22802 * 159.72087 * 21 20 2 23 23 C 1.54595 * 102.91839 * 322.58744 * 22 21 20 24 24 C 1.47898 * 110.99841 * 295.52977 * 20 2 1 25 25 H 1.08999 * 109.47496 * 299.99655 * 1 2 3 26 26 H 1.08996 * 109.47547 * 60.00003 * 1 2 3 27 27 H 1.09010 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46625 * 54.44051 * 4 2 1 29 29 H 1.08997 * 109.47084 * 174.43909 * 4 2 1 30 30 H 0.97000 * 120.00351 * 342.95393 * 5 4 2 31 31 H 1.08997 * 109.47198 * 90.00428 * 10 9 6 32 32 H 1.09010 * 109.47026 * 210.00226 * 10 9 6 33 33 H 1.09006 * 109.47643 * 330.00052 * 10 9 6 34 34 H 1.09001 * 109.47243 * 220.71431 * 11 9 6 35 35 H 1.09002 * 109.47097 * 340.71542 * 11 9 6 36 36 H 0.96996 * 120.00097 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.67062 * 278.15499 * 21 20 2 38 38 H 1.09002 * 110.66845 * 41.28539 * 21 20 2 39 39 H 1.08996 * 110.72741 * 204.23299 * 22 21 20 40 40 H 1.08999 * 110.87260 * 81.01604 * 22 21 20 41 41 H 1.08997 * 110.31055 * 263.03719 * 23 22 21 42 42 H 1.09000 * 110.30675 * 140.86989 * 23 22 21 43 43 H 1.09000 * 109.92007 * 333.50722 * 24 20 2 44 44 H 1.08999 * 109.91763 * 94.80502 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6640 -2.1356 -1.1842 6 16 1.7000 -3.0657 -2.5539 7 8 1.2799 -4.3668 -2.1666 8 8 1.0534 -2.3102 -3.5690 9 7 3.2855 -3.2033 -3.0116 10 6 4.0953 -4.3210 -2.5207 11 6 3.8784 -2.2072 -3.9074 12 6 4.6968 -1.2311 -3.1020 13 1 4.8270 -1.3824 -2.0406 14 6 5.2794 -0.1451 -3.7202 15 7 5.1204 0.0394 -5.0126 16 14 6.2944 1.0643 -2.7219 17 1 7.7132 0.6259 -2.7071 18 1 6.1997 2.4138 -3.3343 19 1 5.7773 1.1147 -1.3307 20 7 2.0197 -0.6925 1.1995 21 6 3.5038 -0.7515 1.2113 22 6 3.8367 -1.0030 2.7035 23 6 2.7777 -0.1526 3.4420 24 6 1.6353 0.0376 2.4269 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.5977 -0.2680 -2.1364 29 1 3.1255 -0.6358 -1.3004 30 1 1.3940 -2.5274 -0.3389 31 1 4.0129 -5.1603 -3.2113 32 1 5.1377 -4.0105 -2.4489 33 1 3.7379 -4.6240 -1.5365 34 1 4.5198 -2.7072 -4.6331 35 1 3.0861 -1.6719 -4.4307 36 1 5.5306 0.8032 -5.4475 37 1 3.8610 -1.5753 0.5934 38 1 3.9291 0.1946 0.8765 39 1 4.8426 -0.6553 2.9383 40 1 3.7267 -2.0583 2.9534 41 1 3.1975 0.8128 3.7243 42 1 2.4160 -0.6812 4.3239 43 1 1.5087 1.0971 2.2046 44 1 0.7092 -0.3735 2.8288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548369387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:43 Heat of formation + Delta-G solvation = -76.056311 kcal Electronic energy + Delta-G solvation = -25441.817323 eV Core-core repulsion = 21941.729302 eV Total energy + Delta-G solvation = -3500.088021 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.25987 -36.55983 -35.57550 -35.34643 -35.10247 -32.50971 -32.12614 -29.19161 -28.56869 -27.76286 -25.57691 -25.08707 -22.27757 -22.09298 -20.71830 -19.83169 -18.73069 -17.22652 -16.73563 -16.53156 -16.15799 -15.81629 -15.25872 -14.85173 -14.33263 -14.21188 -13.88017 -13.44258 -13.22764 -13.12595 -12.85692 -12.57080 -12.26045 -12.17507 -12.12238 -11.65165 -11.63425 -11.40832 -11.31176 -11.27009 -11.19520 -11.10317 -11.03898 -10.95918 -10.75086 -10.63289 -10.55360 -10.44941 -10.07984 -9.79668 -8.77566 -8.54589 -8.35734 -7.99883 -6.14953 -4.21424 1.43087 3.18993 3.26088 3.27718 3.66414 4.02853 4.30334 4.32270 4.64781 4.67726 4.91310 5.07587 5.13884 5.18975 5.29580 5.33037 5.50217 5.52060 5.66095 5.67779 5.74522 5.83416 5.88838 5.93106 5.99275 6.09371 6.14420 6.15226 6.19404 6.25874 6.37082 6.40271 6.53880 6.66821 6.97555 7.16243 7.34111 7.41274 7.58507 7.75807 7.84790 8.13414 8.83170 9.43599 10.92813 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.007502 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.563750 B = 3731.387954 C = 5177.063986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.052 0.948 4 C 0.124 3.876 5 N -1.117 6.117 6 S 2.788 3.212 7 O -1.004 7.004 8 O -0.984 6.984 9 N -0.999 5.999 10 C 0.109 3.891 11 C 0.242 3.758 12 C -0.537 4.537 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.510 5.510 21 C 0.033 3.967 22 C -0.124 4.124 23 C -0.131 4.131 24 C 0.037 3.963 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.414 0.586 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.055 0.945 36 H 0.265 0.735 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -0.214 13.957 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 H 0.070 0.930 4 C -0.002 4.002 5 N -0.878 5.878 6 S 2.795 3.205 7 O -0.989 6.989 8 O -0.968 6.968 9 N -0.841 5.841 10 C -0.038 4.038 11 C 0.120 3.880 12 C -0.576 4.576 13 H 0.082 0.918 14 C -0.138 4.138 15 N -0.524 5.524 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.235 5.235 21 C -0.095 4.095 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.918 -0.892 13.127 14.046 hybrid contribution 1.325 1.703 1.021 2.387 sum -3.593 0.811 14.148 14.620 Atomic orbital electron populations 1.21820 0.94072 1.02758 1.01354 1.22075 0.96109 0.95755 0.90543 0.93000 1.21474 1.01981 0.80083 0.96711 1.55718 1.84412 1.20292 1.27417 1.01608 0.73458 0.72347 0.73063 1.93536 1.82072 1.39271 1.83996 1.93564 1.73480 1.72639 1.57073 1.57622 1.29934 1.35309 1.61203 1.21174 0.97198 0.88024 0.97427 1.19207 0.94880 0.85359 0.88544 1.21518 1.32202 1.08538 0.95370 0.91777 1.24954 0.96326 0.97689 0.94857 1.69932 1.43824 1.29665 1.09020 0.86648 0.80757 0.80669 0.80208 1.20623 1.21164 1.19790 1.64728 1.09793 1.47864 1.01162 1.23278 0.87838 1.01700 0.96655 1.22477 0.98267 1.00548 0.94885 1.22397 0.96098 1.00029 0.98373 1.22832 0.98665 0.96663 0.90929 0.93126 0.91904 0.91590 0.90083 0.89250 0.75176 0.94003 0.90912 0.92856 0.94994 0.92727 0.92550 0.89086 0.93503 0.91355 0.90818 0.91884 0.91321 0.93983 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.06 37.16 0.34 -1.43 16 2 C 0.07 0.90 2.08 -67.71 -0.14 0.76 16 3 H 0.05 0.72 7.97 -51.92 -0.41 0.30 16 4 C 0.12 2.10 5.31 -4.04 -0.02 2.08 16 5 N -1.12 -18.59 5.48 -10.61 -0.06 -18.65 16 6 S 2.79 55.60 6.13 -107.50 -0.66 54.94 16 7 O -1.00 -21.02 17.17 -57.17 -0.98 -22.00 16 8 O -0.98 -22.87 16.06 -57.17 -0.92 -23.79 16 9 N -1.00 -20.48 3.24 -123.05 -0.40 -20.88 16 10 C 0.11 1.88 10.27 59.85 0.61 2.50 16 11 C 0.24 5.88 5.45 -5.20 -0.03 5.85 16 12 C -0.54 -13.27 7.88 -34.44 -0.27 -13.54 16 13 H 0.06 1.51 6.91 -52.48 -0.36 1.15 16 14 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 16 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 N -0.51 -6.53 4.33 -222.49 -0.96 -7.49 16 21 C 0.03 0.44 5.36 -1.90 -0.01 0.43 16 22 C -0.12 -1.33 7.06 -24.87 -0.18 -1.51 16 23 C -0.13 -1.26 6.93 -25.37 -0.18 -1.44 16 24 C 0.04 0.40 5.52 -2.75 -0.02 0.38 16 25 H 0.05 0.54 7.32 -51.93 -0.38 0.16 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.84 7.63 -51.92 -0.40 0.45 16 28 H 0.08 1.49 7.67 -51.93 -0.40 1.09 16 29 H 0.09 1.67 4.74 -51.93 -0.25 1.42 16 30 H 0.41 6.19 7.89 -34.47 -0.27 5.92 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.24 8.05 -51.92 -0.42 0.82 16 33 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 1.47 6.85 -51.93 -0.36 1.11 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.09 1.33 7.78 -51.93 -0.40 0.92 16 38 H 0.05 0.67 8.02 -51.93 -0.42 0.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.45 7.65 -51.93 -0.40 0.05 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -29.96 356.62 -10.25 -40.22 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.38 Total: 5.73 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.02 Total: -4.32 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -0.68 Total: -70.90 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.90 Total: -45.79 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.66 Total: 54.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.96 -10.25 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548369387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.837 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds