Wall clock time and date at job start Fri Apr 10 2020 17:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46958 * 2 1 4 4 C 1.53004 * 109.47282 * 240.00107 * 2 1 3 5 5 N 1.46496 * 109.46839 * 294.44190 * 4 2 1 6 6 S 1.65604 * 119.99695 * 162.95903 * 5 4 2 7 7 O 1.42102 * 106.39995 * 180.33915 * 6 5 4 8 8 O 1.42103 * 106.40004 * 313.25973 * 6 5 4 9 9 N 1.65599 * 107.22071 * 66.80065 * 6 5 4 10 10 C 1.46499 * 119.99790 * 91.06318 * 9 6 5 11 11 C 1.46495 * 120.00029 * 271.06620 * 9 6 5 12 12 C 1.50701 * 109.47416 * 100.71318 * 11 9 6 13 13 H 1.08003 * 120.00025 * 4.42832 * 12 11 9 14 14 C 1.37873 * 120.00135 * 184.42604 * 12 11 9 15 15 N 1.31514 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47117 * 89.99969 * 16 14 12 18 18 H 1.48493 * 109.47235 * 210.00143 * 16 14 12 19 19 H 1.48505 * 109.47034 * 329.99809 * 16 14 12 20 20 N 1.46902 * 109.47196 * 119.99848 * 2 1 3 21 21 C 1.48531 * 110.99795 * 178.13244 * 20 2 1 22 22 C 1.54941 * 103.22802 * 159.72087 * 21 20 2 23 23 C 1.54595 * 102.91839 * 322.58744 * 22 21 20 24 24 C 1.47898 * 110.99841 * 295.52977 * 20 2 1 25 25 H 1.08999 * 109.47496 * 299.99655 * 1 2 3 26 26 H 1.08996 * 109.47547 * 60.00003 * 1 2 3 27 27 H 1.09010 * 109.46958 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46625 * 54.44051 * 4 2 1 29 29 H 1.08997 * 109.47084 * 174.43909 * 4 2 1 30 30 H 0.97000 * 120.00351 * 342.95393 * 5 4 2 31 31 H 1.08997 * 109.47198 * 90.00428 * 10 9 6 32 32 H 1.09010 * 109.47026 * 210.00226 * 10 9 6 33 33 H 1.09006 * 109.47643 * 330.00052 * 10 9 6 34 34 H 1.09001 * 109.47243 * 220.71431 * 11 9 6 35 35 H 1.09002 * 109.47097 * 340.71542 * 11 9 6 36 36 H 0.96996 * 120.00097 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.67062 * 278.15499 * 21 20 2 38 38 H 1.09002 * 110.66845 * 41.28539 * 21 20 2 39 39 H 1.08996 * 110.72741 * 204.23299 * 22 21 20 40 40 H 1.08999 * 110.87260 * 81.01604 * 22 21 20 41 41 H 1.08997 * 110.31055 * 263.03719 * 23 22 21 42 42 H 1.09000 * 110.30675 * 140.86989 * 23 22 21 43 43 H 1.09000 * 109.92007 * 333.50722 * 24 20 2 44 44 H 1.08999 * 109.91763 * 94.80502 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6640 -2.1356 -1.1842 6 16 1.7000 -3.0657 -2.5539 7 8 1.2799 -4.3668 -2.1666 8 8 1.0534 -2.3102 -3.5690 9 7 3.2855 -3.2033 -3.0116 10 6 4.0953 -4.3210 -2.5207 11 6 3.8784 -2.2072 -3.9074 12 6 4.6968 -1.2311 -3.1020 13 1 4.8270 -1.3824 -2.0406 14 6 5.2794 -0.1451 -3.7202 15 7 5.1204 0.0394 -5.0126 16 14 6.2944 1.0643 -2.7219 17 1 7.7132 0.6259 -2.7071 18 1 6.1997 2.4138 -3.3343 19 1 5.7773 1.1147 -1.3307 20 7 2.0197 -0.6925 1.1995 21 6 3.5038 -0.7515 1.2113 22 6 3.8367 -1.0030 2.7035 23 6 2.7777 -0.1526 3.4420 24 6 1.6353 0.0376 2.4269 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.5977 -0.2680 -2.1364 29 1 3.1255 -0.6358 -1.3004 30 1 1.3940 -2.5274 -0.3389 31 1 4.0129 -5.1603 -3.2113 32 1 5.1377 -4.0105 -2.4489 33 1 3.7379 -4.6240 -1.5365 34 1 4.5198 -2.7072 -4.6331 35 1 3.0861 -1.6719 -4.4307 36 1 5.5306 0.8032 -5.4475 37 1 3.8610 -1.5753 0.5934 38 1 3.9291 0.1946 0.8765 39 1 4.8426 -0.6553 2.9383 40 1 3.7267 -2.0583 2.9534 41 1 3.1975 0.8128 3.7243 42 1 2.4160 -0.6812 4.3239 43 1 1.5087 1.0971 2.2046 44 1 0.7092 -0.3735 2.8288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548369387.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:43 Heat of formation + Delta-G solvation = -98.302348 kcal Electronic energy + Delta-G solvation = -25442.781983 eV Core-core repulsion = 21941.729302 eV Total energy + Delta-G solvation = -3501.052681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26615 -38.27157 -37.20678 -36.84761 -36.65710 -34.44873 -33.31187 -30.10444 -29.64418 -29.51035 -26.84726 -26.74960 -24.13570 -23.12534 -21.59325 -20.92256 -20.29742 -18.87383 -18.52403 -18.23123 -17.44060 -16.86499 -16.75773 -16.49884 -15.76159 -15.47790 -15.04561 -14.95385 -14.81109 -14.26043 -13.99863 -13.92744 -13.90416 -13.55722 -13.35458 -13.18410 -13.10444 -13.03389 -12.99510 -12.86196 -12.44530 -12.40146 -12.35286 -12.18338 -12.05862 -11.89269 -11.83990 -11.78082 -11.60894 -11.36689 -10.56462 -10.24479 -9.73387 -9.36209 -8.14288 -6.27042 -0.21206 1.43082 1.44383 1.53371 2.07968 2.43280 2.68445 3.03389 3.17765 3.48747 3.73345 3.79168 3.96515 4.13715 4.16967 4.20420 4.38954 4.41990 4.61632 4.67776 4.74138 4.76255 4.80604 4.91308 4.92844 4.99130 5.03005 5.06072 5.09486 5.13496 5.14559 5.21860 5.32634 5.37215 5.39345 5.51047 5.78412 5.90519 5.99959 6.12010 6.13931 6.40004 6.84674 7.42129 8.94055 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.007502 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.563750 B = 3731.387954 C = 5177.063986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.054 0.946 4 C 0.127 3.873 5 N -1.099 6.099 6 S 2.802 3.198 7 O -1.010 7.010 8 O -1.019 7.019 9 N -1.003 6.003 10 C 0.100 3.900 11 C 0.256 3.744 12 C -0.530 4.530 13 H 0.077 0.923 14 C 0.014 3.986 15 N -0.929 5.929 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.255 1.255 20 N -0.513 5.513 21 C 0.028 3.972 22 C -0.119 4.119 23 C -0.125 4.125 24 C 0.034 3.966 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.425 0.575 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.013 0.987 35 H 0.022 0.978 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 -0.010 16.974 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.072 0.928 4 C 0.000 4.000 5 N -0.863 5.863 6 S 2.810 3.190 7 O -0.995 6.995 8 O -1.003 7.003 9 N -0.845 5.845 10 C -0.045 4.045 11 C 0.132 3.868 12 C -0.569 4.569 13 H 0.095 0.905 14 C -0.186 4.186 15 N -0.569 5.569 16 Si 0.777 3.223 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.178 1.178 20 N -0.239 5.239 21 C -0.100 4.100 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.093 4.093 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.262 0.738 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.823 -0.725 16.182 16.901 hybrid contribution 1.261 1.575 0.090 2.019 sum -3.563 0.850 16.272 16.679 Atomic orbital electron populations 1.21799 0.92810 1.02780 1.02317 1.21983 0.97043 0.95300 0.89623 0.92786 1.21392 1.00807 0.80030 0.97816 1.55329 1.83997 1.20028 1.26926 1.01020 0.72975 0.71994 0.73026 1.93520 1.82122 1.39744 1.84074 1.93521 1.74393 1.73428 1.58949 1.57523 1.30254 1.35567 1.61120 1.21410 0.97059 0.87221 0.98816 1.18794 0.93507 0.85756 0.88725 1.21743 1.31203 1.08176 0.95810 0.90547 1.25758 0.97554 0.99602 0.95661 1.70073 1.45395 1.30506 1.10879 0.85647 0.79140 0.77959 0.79549 1.20277 1.21639 1.17834 1.64724 1.09477 1.48190 1.01479 1.23265 0.88158 1.00318 0.98254 1.22460 0.99160 1.01097 0.93028 1.22391 0.95172 1.00428 0.98348 1.22932 0.99616 0.96680 0.90078 0.90900 0.92271 0.92007 0.92192 0.90968 0.73825 0.92887 0.90624 0.90559 0.96866 0.95964 0.92681 0.90798 0.94855 0.90581 0.90501 0.91086 0.89783 0.93669 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.06 71.98 0.65 -2.56 16 2 C 0.07 1.86 2.08 44.92 0.09 1.96 16 3 H 0.05 1.42 7.97 -2.38 -0.02 1.40 16 4 C 0.13 4.26 5.31 86.38 0.46 4.72 16 5 N -1.10 -35.94 5.48 -187.50 -1.03 -36.97 16 6 S 2.80 111.86 6.13 -56.49 -0.35 111.51 16 7 O -1.01 -41.26 17.17 -128.00 -2.20 -43.46 16 8 O -1.02 -48.60 16.06 -128.00 -2.06 -50.66 16 9 N -1.00 -41.29 3.24 -543.22 -1.76 -43.05 16 10 C 0.10 3.37 10.27 127.77 1.31 4.69 16 11 C 0.26 12.77 5.45 85.63 0.47 13.23 16 12 C -0.53 -26.39 7.88 25.60 0.20 -26.19 16 13 H 0.08 3.55 6.91 -2.91 -0.02 3.53 16 14 C 0.01 0.72 5.46 84.65 0.46 1.18 16 15 N -0.93 -52.86 13.29 21.45 0.28 -52.57 16 16 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 20 N -0.51 -12.05 4.33 -857.83 -3.71 -15.76 16 21 C 0.03 0.69 5.36 86.65 0.46 1.16 16 22 C -0.12 -2.25 7.06 31.80 0.22 -2.03 16 23 C -0.13 -1.99 6.93 31.47 0.22 -1.77 16 24 C 0.03 0.63 5.52 86.45 0.48 1.11 16 25 H 0.07 1.35 7.32 -2.39 -0.02 1.34 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.47 7.63 -2.38 -0.02 1.45 16 28 H 0.06 2.27 7.67 -2.39 -0.02 2.25 16 29 H 0.07 2.69 4.74 -2.39 -0.01 2.68 16 30 H 0.42 12.11 7.89 -96.74 -0.76 11.34 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.49 8.05 -2.38 -0.02 2.47 16 33 H 0.08 2.20 7.76 -2.38 -0.02 2.18 16 34 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.02 1.26 6.85 -2.39 -0.02 1.24 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.07 2.07 7.78 -2.39 -0.02 2.05 16 38 H 0.03 0.91 8.02 -2.39 -0.02 0.89 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.04 0.82 7.65 -2.39 -0.02 0.80 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.33 356.62 -3.54 -67.87 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.22 Total: 25.15 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 5.03 Total: -4.50 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -6.22 Total: -148.36 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -4.25 Total: -94.12 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 111.86 SS G_CDS: -0.35 Total: 111.51 kcal Total: -64.33 -3.54 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548369387.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.429 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds