Wall clock time and date at job start Fri Apr 10 2020 17:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46926 * 2 1 4 4 H 1.08994 * 109.52572 * 54.92321 * 3 2 1 5 5 C 1.53159 * 109.48014 * 294.84477 * 3 2 1 6 6 N 1.46928 * 108.76987 * 185.40798 * 5 3 2 7 7 S 1.65595 * 120.63205 * 233.63241 * 6 5 3 8 8 O 1.42104 * 106.40395 * 23.51648 * 7 6 5 9 9 O 1.42097 * 106.40318 * 156.43690 * 7 6 5 10 10 N 1.65603 * 107.21891 * 269.97787 * 7 6 5 11 11 C 1.46501 * 120.00227 * 89.99984 * 10 7 6 12 12 C 1.46497 * 119.99660 * 270.00047 * 10 7 6 13 13 C 1.50704 * 109.47420 * 94.99966 * 12 10 7 14 14 H 1.08001 * 119.99673 * 0.02562 * 13 12 10 15 15 C 1.37877 * 120.00291 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00019 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47142 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46724 * 120.00066 * 17 15 13 20 20 H 1.48490 * 109.47439 * 240.00228 * 17 15 13 21 21 C 1.46931 * 118.73792 * 53.61250 * 6 5 3 22 22 C 1.53200 * 108.77279 * 306.39072 * 21 6 5 23 23 C 1.53039 * 109.31160 * 54.63574 * 22 21 6 24 24 H 1.09002 * 109.46050 * 58.65698 * 23 22 21 25 25 N 1.46895 * 109.45925 * 178.62921 * 23 22 21 26 26 H 1.09005 * 109.46675 * 299.99722 * 1 2 3 27 27 H 1.08996 * 109.47121 * 59.99540 * 1 2 3 28 28 H 1.08993 * 109.47040 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46885 * 239.99789 * 2 1 3 30 30 H 1.08999 * 109.46849 * 120.00012 * 2 1 3 31 31 H 1.08999 * 109.58991 * 65.62090 * 5 3 2 32 32 H 1.09002 * 109.70860 * 305.26095 * 5 3 2 33 33 H 1.08998 * 109.47129 * 90.00143 * 11 10 7 34 34 H 1.08996 * 109.47149 * 210.00282 * 11 10 7 35 35 H 1.09007 * 109.46800 * 329.99799 * 11 10 7 36 36 H 1.09000 * 109.46925 * 214.99880 * 12 10 7 37 37 H 1.08999 * 109.47454 * 334.99448 * 12 10 7 38 38 H 0.96996 * 119.99475 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.58425 * 186.61021 * 21 6 5 40 40 H 1.08995 * 109.70793 * 66.24640 * 21 6 5 41 41 H 1.08997 * 109.49280 * 294.68615 * 22 21 6 42 42 H 1.08992 * 109.49396 * 174.58854 * 22 21 6 43 43 H 1.00898 * 111.00085 * 300.02763 * 25 23 22 44 44 H 1.00906 * 111.00486 * 63.97963 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6382 2.1262 -1.3103 6 7 2.2445 3.4640 -1.3507 7 16 1.3112 4.8057 -1.6168 8 8 -0.0101 4.4596 -1.2245 9 8 2.0227 5.9053 -1.0656 10 7 1.2633 5.0528 -3.2536 11 6 0.2103 4.4283 -4.0583 12 6 2.2740 5.8959 -3.8969 13 6 3.3897 5.0301 -4.4229 14 1 3.3497 3.9589 -4.2915 15 6 4.4610 5.6054 -5.0727 16 7 4.5095 6.9099 -5.2331 17 14 5.8443 4.5322 -5.7240 18 1 5.5529 3.1088 -5.4170 19 1 5.9568 4.7081 -7.1943 20 1 7.1224 4.9265 -5.0791 21 6 3.6947 3.5887 -1.1501 22 6 4.0735 2.8882 0.1586 23 6 3.5653 1.4450 0.1257 24 1 4.0009 0.9260 -0.7281 25 7 3.9552 0.7605 1.3655 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5530 2.2153 -1.3582 32 1 1.9943 1.5380 -2.1561 33 1 -0.6481 5.0977 -4.1159 34 1 0.5874 4.2338 -5.0622 35 1 -0.0919 3.4889 -3.5952 36 1 1.8187 6.4431 -4.7223 37 1 2.6742 6.6024 -3.1697 38 1 5.2630 7.3145 -5.6906 39 1 3.9663 4.6427 -1.0922 40 1 4.2223 3.1205 -1.9811 41 1 3.6190 3.4149 0.9978 42 1 5.1575 2.8897 0.2715 43 1 4.9586 0.7483 1.4717 44 1 3.5120 1.1837 2.1671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592381987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:56 Heat of formation + Delta-G solvation = -88.834754 kcal Electronic energy + Delta-G solvation = -25470.703237 eV Core-core repulsion = 21970.061101 eV Total energy + Delta-G solvation = -3500.642136 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.13170 -36.72713 -35.47847 -35.22172 -34.50133 -33.81375 -32.50502 -29.75208 -28.52393 -27.79784 -25.09427 -24.34378 -23.09912 -22.25366 -21.18225 -20.11299 -18.39641 -17.35788 -16.79182 -16.38939 -15.98299 -15.72054 -15.07482 -14.74653 -14.37845 -14.12343 -13.86200 -13.71749 -13.47721 -13.24633 -13.21336 -12.54545 -12.35889 -12.22742 -12.17374 -12.04193 -11.71753 -11.61545 -11.45388 -11.22694 -11.18561 -11.14590 -10.94025 -10.79816 -10.62782 -10.59008 -10.52672 -10.21296 -10.06829 -9.78560 -8.86684 -8.56968 -8.50625 -8.03354 -6.13919 -4.20575 1.24949 3.20897 3.29471 3.31212 3.46349 4.10313 4.33290 4.45203 4.61686 4.76690 5.00227 5.02761 5.20058 5.21723 5.27027 5.35507 5.40822 5.46256 5.57640 5.66118 5.72576 5.83037 5.92038 5.93429 6.02647 6.06651 6.07157 6.12804 6.23181 6.31032 6.39364 6.46320 6.47273 6.57248 6.93049 7.04804 7.32216 7.34709 7.42352 7.62300 7.83366 8.12792 8.84936 9.45544 10.94140 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.006063 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.648035 B = 4617.025678 C = 5504.719042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.090 4.090 4 H 0.071 0.929 5 C 0.124 3.876 6 N -1.003 6.003 7 S 2.786 3.214 8 O -0.999 6.999 9 O -0.978 6.978 10 N -0.997 5.997 11 C 0.107 3.893 12 C 0.243 3.757 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.130 3.870 22 C -0.165 4.165 23 C 0.096 3.904 24 H 0.083 0.917 25 N -0.843 5.843 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.050 0.950 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.339 0.661 44 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 -11.876 9.030 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.841 5.841 7 S 2.796 3.204 8 O -0.983 6.983 9 O -0.962 6.962 10 N -0.839 5.839 11 C -0.040 4.040 12 C 0.121 3.879 13 C -0.577 4.577 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.004 3.996 22 C -0.207 4.207 23 C -0.015 4.015 24 H 0.101 0.899 25 N -0.370 5.370 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.151 0.849 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.223 -11.820 9.266 15.602 hybrid contribution 1.548 0.252 -0.607 1.682 sum -2.676 -11.568 8.659 14.695 Atomic orbital electron populations 1.21875 0.96324 1.01252 1.02064 1.21433 0.94983 0.95428 1.02871 1.21504 0.94654 0.96595 0.98295 0.91078 1.21460 0.98409 0.83169 0.97164 1.58150 1.17976 1.20940 1.87016 1.01726 0.72509 0.72815 0.73397 1.93520 1.37479 1.84761 1.82541 1.93558 1.74327 1.50855 1.77472 1.57672 1.38418 1.61991 1.25846 1.21207 0.89507 0.95981 0.97268 1.19222 0.84808 0.89599 0.94247 1.21584 1.04605 0.94028 1.37448 0.91858 1.24961 0.98175 0.94924 0.95864 1.69948 1.31265 1.09427 1.42136 0.86535 0.82075 0.80617 0.78739 1.19696 1.20957 1.20867 1.21257 0.79596 1.02557 0.96217 1.22760 1.00972 0.97662 0.99262 1.21437 0.95199 0.91692 0.93203 0.89932 1.58983 1.13470 1.59924 1.04655 0.92854 0.92527 0.93007 0.92198 0.90457 0.89156 0.91569 0.93789 0.90824 0.93028 0.94488 0.93192 0.92641 0.88553 0.90968 0.91833 0.91082 0.84883 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.11 -1.13 5.31 -26.73 -0.14 -1.28 16 3 C -0.09 -1.07 1.99 -90.52 -0.18 -1.25 16 4 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 5 C 0.12 1.73 5.37 -3.73 -0.02 1.71 16 6 N -1.00 -16.79 3.35 -113.53 -0.38 -17.17 16 7 S 2.79 55.96 6.10 -107.50 -0.66 55.30 16 8 O -1.00 -20.43 15.80 -57.17 -0.90 -21.33 16 9 O -0.98 -22.72 15.28 -57.17 -0.87 -23.60 16 10 N -1.00 -20.78 3.23 -123.05 -0.40 -21.17 16 11 C 0.11 1.85 10.31 59.85 0.62 2.47 16 12 C 0.24 6.03 5.41 -5.19 -0.03 6.00 16 13 C -0.54 -13.80 9.38 -34.44 -0.32 -14.12 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 17 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.13 2.11 6.48 -3.70 -0.02 2.08 16 22 C -0.17 -2.09 5.65 -26.61 -0.15 -2.24 16 23 C 0.10 1.09 2.67 -67.67 -0.18 0.91 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 N -0.84 -7.88 8.34 -4.63 -0.04 -7.92 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.59 6.70 -51.93 -0.35 0.24 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.80 7.41 -51.93 -0.38 0.42 16 31 H 0.09 1.27 5.63 -51.93 -0.29 0.98 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 36 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 37 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.10 1.78 6.92 -51.93 -0.36 1.42 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.34 2.75 9.04 -39.29 -0.36 2.40 16 44 H 0.34 2.93 8.98 -39.29 -0.35 2.57 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -30.57 357.06 -9.79 -40.36 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.47 Total: 4.57 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.17 Total: -5.33 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -0.08 Total: -70.65 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.78 Total: -44.93 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -0.66 Total: 55.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.57 -9.79 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592381987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.476 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds