Wall clock time and date at job start Fri Apr 10 2020 17:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47135 * 2 1 4 4 C 1.36888 * 125.31108 * 274.99618 * 3 2 1 5 5 C 1.34291 * 109.51047 * 180.02562 * 4 3 2 6 6 C 1.46747 * 107.46988 * 359.75021 * 5 4 3 7 7 N 1.30888 * 126.84980 * 180.30361 * 6 5 4 8 8 C 1.46504 * 120.00161 * 0.12657 * 7 6 5 9 9 C 1.50689 * 109.47467 * 119.99888 * 8 7 6 10 10 O 1.21283 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00015 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99903 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47195 * 90.00100 * 12 11 9 14 14 H 1.08002 * 120.00121 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00183 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47310 * 59.99253 * 17 15 13 19 19 H 1.48505 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46958 * 299.99120 * 17 15 13 21 21 C 1.46498 * 120.00215 * 0.02562 * 11 9 8 22 22 C 1.52991 * 109.47328 * 90.00035 * 21 11 9 23 23 C 1.47200 * 109.47314 * 180.02562 * 22 21 11 24 24 N 9.98645 * 111.54523 * 339.98670 * 2 1 3 25 25 N 1.38430 * 106.30537 * 0.40886 * 6 5 4 26 26 H 0.97001 * 126.33431 * 179.86888 * 25 6 5 27 27 H 1.08994 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47095 * 300.00579 * 1 2 3 29 29 H 1.09006 * 109.46779 * 60.00298 * 1 2 3 30 30 H 1.08998 * 109.47384 * 239.99768 * 2 1 3 31 31 H 1.09006 * 109.46779 * 119.99702 * 2 1 3 32 32 H 1.08002 * 125.24434 * 359.97438 * 4 3 2 33 33 H 1.07998 * 126.25964 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47084 * 240.01003 * 8 7 6 35 35 H 1.09005 * 109.46701 * 359.97438 * 8 7 6 36 36 H 1.09005 * 109.46966 * 209.99915 * 12 11 9 37 37 H 1.08994 * 109.47195 * 329.99578 * 12 11 9 38 38 H 0.96995 * 120.00173 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.47377 * 210.00213 * 21 11 9 40 40 H 1.09001 * 109.46906 * 329.99898 * 21 11 9 41 41 H 1.09005 * 109.47537 * 300.00242 * 22 21 11 42 42 H 1.09001 * 109.47238 * 60.00067 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1904 2.1597 -1.1128 5 6 2.6517 3.3672 -0.7486 6 6 2.7810 3.3668 0.7132 7 7 3.1931 4.3558 1.4650 8 6 3.5807 5.6291 0.8529 9 6 2.7055 6.7319 1.3902 10 8 1.8431 6.4793 2.2047 11 7 2.8811 7.9989 0.9656 12 6 2.0305 9.0711 1.4885 13 6 2.6675 9.6625 2.7195 14 1 3.6113 9.2779 3.0770 15 6 2.0449 10.6939 3.3900 16 7 0.8954 11.1619 2.9551 17 14 2.8349 11.4275 4.9156 18 1 4.1681 11.9800 4.5657 19 1 1.9727 12.5143 5.4456 20 1 2.9920 10.3717 5.9480 21 6 3.9223 8.3040 -0.0186 22 6 3.3421 8.1831 -1.4291 23 6 4.3885 8.4891 -2.4181 24 7 5.1974 8.7278 -3.1789 25 7 2.3826 2.1111 1.1383 26 1 2.3564 1.7963 2.0554 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9873 1.8502 -2.1274 33 1 2.8808 4.1895 -1.4100 34 1 4.6227 5.8439 1.0899 35 1 3.4606 5.5637 -0.2286 36 1 1.9159 9.8462 0.7306 37 1 1.0516 8.6661 1.7448 38 1 0.4577 11.8878 3.4266 39 1 4.2851 9.3198 0.1391 40 1 4.7478 7.6015 0.0961 41 1 2.9793 7.1673 -1.5870 42 1 2.5166 8.8856 -1.5439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:20 Heat of formation + Delta-G solvation = 101.979912 kcal Electronic energy + Delta-G solvation = -24231.584225 eV Core-core repulsion = 20636.065234 eV Total energy + Delta-G solvation = -3595.518991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67168 -38.95508 -36.74446 -35.48608 -34.94159 -33.26320 -32.69199 -31.50059 -30.68595 -29.06421 -27.57125 -25.84726 -23.85207 -23.36548 -22.54103 -21.62768 -20.26943 -18.25028 -17.84238 -17.44030 -16.37480 -16.27397 -15.66025 -15.32090 -15.10459 -14.88859 -14.62418 -14.53076 -14.19391 -14.02796 -13.55468 -13.38311 -13.29313 -13.06125 -12.79100 -12.51242 -12.32073 -12.30295 -12.14051 -11.75314 -11.72095 -11.46127 -11.16018 -10.89306 -10.76354 -10.49532 -10.39320 -10.07768 -9.59421 -9.49486 -8.82270 -8.59536 -8.36360 -7.64553 -6.92967 -5.97954 -4.01679 1.60704 1.73981 2.81872 2.89269 3.20162 3.38304 3.42089 3.45746 3.59092 3.70843 3.88140 4.32801 4.40879 4.50750 4.53009 4.56430 4.73625 5.00392 5.11138 5.18965 5.24024 5.26563 5.35627 5.44160 5.48854 5.61880 5.65397 5.67488 5.76805 5.91150 5.98236 6.07770 6.21572 6.74719 7.09966 7.32536 7.50863 7.59582 7.65056 7.66514 7.99517 8.30982 8.43310 8.58761 8.99468 9.26363 9.63607 11.10121 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003504 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.058201 B = 7988.108756 C = 9571.992979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 N -0.413 5.413 4 C 0.142 3.858 5 C -0.320 4.320 6 C 0.422 3.578 7 N -0.591 5.591 8 C 0.061 3.939 9 C 0.507 3.493 10 O -0.517 6.517 11 N -0.604 5.604 12 C 0.247 3.753 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.119 3.881 22 C -0.051 4.051 23 C 0.219 3.781 24 N -0.449 5.449 25 N -0.518 5.518 26 H 0.441 0.559 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -22.485 -11.614 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.017 3.983 3 N -0.207 5.207 4 C 0.011 3.989 5 C -0.354 4.354 6 C 0.149 3.851 7 N -0.322 5.322 8 C -0.073 4.073 9 C 0.293 3.707 10 O -0.391 6.391 11 N -0.337 5.337 12 C 0.128 3.872 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.008 4.008 22 C -0.093 4.093 23 C -0.099 4.099 24 N -0.126 5.126 25 N -0.254 5.254 26 H 0.287 0.713 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.946 -22.188 -11.251 24.953 hybrid contribution -0.045 0.415 0.696 0.812 sum 1.901 -21.772 -10.555 24.270 Atomic orbital electron populations 1.22341 0.95071 1.02783 1.03531 1.21624 0.94699 0.77802 1.04189 1.46151 1.66057 1.10865 0.97669 1.21963 0.95475 0.90878 0.90614 1.22501 1.18398 0.99537 0.94986 1.20239 0.90965 0.85356 0.88517 1.72041 1.28423 0.99418 1.32350 1.21703 0.99122 0.89393 0.97102 1.20463 0.84815 0.83037 0.82382 1.90662 1.34077 1.82271 1.32046 1.48236 1.35552 1.08469 1.41451 1.19277 0.90595 0.83483 0.93866 1.21434 1.07047 1.16942 1.10966 0.92408 1.24914 0.94869 0.96718 0.97550 1.69913 1.15962 1.27232 1.40445 0.86587 0.79039 0.78615 0.83359 1.20280 1.21300 1.20173 1.21263 0.90706 1.03756 0.85030 1.19937 0.93638 1.04835 0.90866 1.29137 0.94114 0.92823 0.93815 1.81187 1.10853 1.09498 1.11065 1.43710 1.71180 1.09407 1.01083 0.71264 0.90819 0.91801 0.91696 0.88705 0.89620 0.80524 0.82892 0.88999 0.92236 0.94904 0.93795 0.92755 0.88925 0.90725 0.87692 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 10.24 37.16 0.38 -0.37 16 2 C 0.14 0.55 7.12 -4.04 -0.03 0.53 16 3 N -0.41 -3.29 3.64 -61.11 -0.22 -3.51 16 4 C 0.14 1.10 11.38 -16.69 -0.19 0.91 16 5 C -0.32 -3.51 10.08 -37.54 -0.38 -3.89 16 6 C 0.42 6.09 8.29 -153.75 -1.28 4.81 16 7 N -0.59 -10.61 10.14 -59.77 -0.61 -11.22 16 8 C 0.06 1.01 5.38 -5.20 -0.03 0.98 16 9 C 0.51 10.80 7.74 -10.99 -0.09 10.72 16 10 O -0.52 -13.79 16.01 5.55 0.09 -13.70 16 11 N -0.60 -12.14 2.46 -175.06 -0.43 -12.57 16 12 C 0.25 6.23 5.16 -5.19 -0.03 6.20 16 13 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 17 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 21 C 0.12 1.74 5.17 -4.05 -0.02 1.72 16 22 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 23 C 0.22 2.76 15.43 -20.77 -0.32 2.44 16 24 N -0.45 -6.76 18.54 42.15 0.78 -5.98 16 25 N -0.52 -5.83 7.40 32.39 0.24 -5.59 16 26 H 0.44 4.37 8.96 -182.65 -1.64 2.73 16 27 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.15 1.47 6.91 -52.49 -0.36 1.10 16 34 H 0.09 1.41 7.40 -51.93 -0.38 1.02 16 35 H 0.06 0.79 5.03 -51.93 -0.26 0.52 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.42 8.07 -51.92 -0.42 1.00 16 40 H 0.07 0.94 6.44 -51.93 -0.33 0.60 16 41 H 0.11 0.98 7.22 -51.93 -0.38 0.61 16 42 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -39.27 367.75 -8.55 -47.81 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.08 Total: -1.90 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -2.57 Total: 9.81 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.50 Total: -64.69 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.27 -8.55 -47.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.794 kcal (2) G-P(sol) polarization free energy of solvation -39.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds