Wall clock time and date at job start Fri Apr 10 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.99852 * 2 1 4 4 C 1.54338 * 109.98703 * 238.96720 * 2 1 3 5 5 H 1.08999 * 110.51703 * 336.97158 * 4 2 1 6 6 N 1.46902 * 110.85172 * 100.19527 * 4 2 1 7 7 C 1.46900 * 110.99896 * 175.14484 * 6 4 2 8 8 C 1.46899 * 110.99961 * 299.10276 * 6 4 2 9 9 C 1.55161 * 103.01914 * 218.66545 * 4 2 1 10 10 C 1.54910 * 101.58061 * 35.30336 * 9 4 2 11 11 N 1.47017 * 109.88760 * 121.10083 * 2 1 3 12 12 S 1.65603 * 125.64648 * 298.39697 * 11 2 1 13 13 O 1.42092 * 106.40486 * 156.17455 * 12 11 2 14 14 O 1.42101 * 106.40391 * 23.25075 * 12 11 2 15 15 N 1.65604 * 107.21518 * 269.71628 * 12 11 2 16 16 C 1.46503 * 119.99536 * 270.00010 * 15 12 11 17 17 C 1.46491 * 120.00514 * 89.99631 * 15 12 11 18 18 C 1.50702 * 109.46957 * 94.99913 * 17 15 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 15 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 15 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 H 1.09006 * 109.46310 * 300.35738 * 1 2 3 27 27 H 1.08997 * 109.47244 * 60.35309 * 1 2 3 28 28 H 1.08998 * 109.47170 * 180.35686 * 1 2 3 29 29 H 1.08991 * 109.47174 * 60.00273 * 7 6 4 30 30 H 1.08997 * 109.46842 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46938 * 299.99766 * 7 6 4 32 32 H 1.08995 * 109.47213 * 59.99734 * 8 6 4 33 33 H 1.08998 * 109.46706 * 180.02562 * 8 6 4 34 34 H 1.09001 * 109.46891 * 299.99694 * 8 6 4 35 35 H 1.09000 * 111.00013 * 277.23257 * 9 4 2 36 36 H 1.08992 * 111.00576 * 153.38479 * 9 4 2 37 37 H 1.09000 * 110.36522 * 204.15274 * 10 9 4 38 38 H 1.09001 * 110.36553 * 81.83437 * 10 9 4 39 39 H 1.09007 * 109.47205 * 270.00151 * 16 15 12 40 40 H 1.08999 * 109.47284 * 29.99860 * 16 15 12 41 41 H 1.08996 * 109.47487 * 149.99938 * 16 15 12 42 42 H 1.09004 * 109.47166 * 335.00179 * 17 15 12 43 43 H 1.08994 * 109.47507 * 214.99885 * 17 15 12 44 44 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3052 -1.4406 -1.6197 6 7 2.4647 0.1995 -2.2893 7 6 3.0735 -0.5026 -3.4270 8 6 1.3287 1.0225 -2.7252 9 6 3.2863 -1.5184 -0.6917 10 6 2.8099 -1.8825 0.7367 11 7 2.0302 -0.7141 1.1838 12 16 1.7566 -0.2817 2.7588 13 8 1.9045 -1.4651 3.5313 14 8 0.5726 0.5039 2.7594 15 7 2.9884 0.7288 3.2106 16 6 4.2094 0.1761 3.8023 17 6 2.8572 2.1751 3.0186 18 6 2.3540 2.8071 4.2908 19 1 2.1524 2.1928 5.1560 20 6 2.1567 4.1703 4.3523 21 7 1.7228 4.7225 5.4642 22 14 2.5059 5.2329 2.8561 23 1 1.2772 5.3427 2.0294 24 1 2.9278 6.5865 3.2979 25 1 3.5901 4.6143 2.0518 26 1 -0.3632 0.5194 0.8869 27 1 -0.3633 0.5083 -0.8931 28 1 -0.3633 -1.0276 0.0064 29 1 2.3527 -1.2022 -3.8501 30 1 3.3660 0.2221 -4.1867 31 1 3.9539 -1.0485 -3.0880 32 1 0.9406 1.5852 -1.8762 33 1 1.6577 1.7145 -3.5004 34 1 0.5446 0.3781 -3.1229 35 1 4.1669 -0.8769 -0.6581 36 1 3.4807 -2.4155 -1.2794 37 1 3.6656 -2.0413 1.3930 38 1 2.1802 -2.7718 0.7113 39 1 4.0977 0.1257 4.8855 40 1 4.3833 -0.8250 3.4080 41 1 5.0556 0.8165 3.5538 42 1 2.1517 2.3720 2.2114 43 1 3.8289 2.5974 2.7629 44 1 1.5837 5.6815 5.5073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:53 Heat of formation + Delta-G solvation = -80.728770 kcal Electronic energy + Delta-G solvation = -25421.663924 eV Core-core repulsion = 21921.373290 eV Total energy + Delta-G solvation = -3500.290634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48951 -38.37877 -37.31567 -36.93804 -36.86129 -34.52408 -32.54914 -31.01272 -30.29592 -28.25030 -27.06841 -26.72213 -23.91049 -23.83814 -22.86200 -21.23801 -19.86126 -19.20328 -18.52654 -18.44589 -17.56581 -16.98499 -16.36207 -15.92767 -15.62267 -15.46336 -15.21103 -14.76459 -14.67283 -14.54939 -14.47055 -14.26019 -13.98884 -13.73979 -13.40486 -13.33096 -13.19087 -13.18355 -13.05316 -12.92610 -12.79738 -12.40048 -12.35403 -12.31624 -12.22444 -12.07096 -12.00216 -11.79005 -11.71519 -11.43771 -10.79467 -10.08916 -9.79148 -9.27288 -8.30123 -6.36092 -0.46763 1.35858 1.39600 1.48383 1.98320 2.34454 2.51487 2.97021 3.03511 3.22338 3.48682 3.71376 3.95290 4.06801 4.25405 4.27169 4.34598 4.46608 4.52730 4.53107 4.58310 4.68045 4.68613 4.72755 4.74310 4.80831 4.85844 4.89731 5.01675 5.02072 5.09420 5.13026 5.18005 5.26383 5.30207 5.39807 5.45249 5.47698 5.78409 6.10680 6.15838 6.29161 6.66217 7.26842 8.87634 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.006036 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.792213 B = 4637.366098 C = 5621.083522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.151 3.849 3 H 0.068 0.932 4 C 0.085 3.915 5 H 0.070 0.930 6 N -0.552 5.552 7 C 0.026 3.974 8 C 0.015 3.985 9 C -0.110 4.110 10 C 0.112 3.888 11 N -1.013 6.013 12 S 2.804 3.196 13 O -1.006 7.006 14 O -0.997 6.997 15 N -1.001 6.001 16 C 0.099 3.901 17 C 0.239 3.761 18 C -0.543 4.543 19 H 0.025 0.975 20 C 0.009 3.991 21 N -0.948 5.948 22 Si 0.943 3.057 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.230 1.230 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.619 -13.192 -21.913 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.025 4.025 5 H 0.087 0.913 6 N -0.276 5.276 7 C -0.122 4.122 8 C -0.133 4.133 9 C -0.149 4.149 10 C -0.013 4.013 11 N -0.854 5.854 12 S 2.815 3.185 13 O -0.990 6.990 14 O -0.981 6.981 15 N -0.842 5.842 16 C -0.046 4.046 17 C 0.114 3.886 18 C -0.583 4.583 19 H 0.044 0.956 20 C -0.189 4.189 21 N -0.588 5.588 22 Si 0.764 3.236 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.153 1.153 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.216 -12.987 -20.973 25.214 hybrid contribution -0.738 0.527 -0.032 0.907 sum 4.478 -12.460 -21.005 24.830 Atomic orbital electron populations 1.22614 0.95146 1.03068 1.03895 1.21354 0.93667 0.96044 0.84478 0.91369 1.22698 0.97176 0.92486 0.90118 0.91261 1.61988 1.30363 1.23748 1.11537 1.22430 0.99422 0.98204 0.92099 1.22548 0.92143 0.97551 1.01044 1.22858 0.97330 1.01029 0.93709 1.22258 0.95029 0.87195 0.96798 1.59020 1.67003 1.37930 1.21476 1.01032 0.73062 0.71930 0.72467 1.93504 1.87297 1.49077 1.69151 1.93540 1.46676 1.71292 1.86602 1.57488 1.33579 1.17399 1.75689 1.21481 0.86420 0.98980 0.97737 1.19184 0.97706 0.76777 0.94924 1.21679 1.44672 0.93191 0.98712 0.95635 1.25926 0.94039 0.99385 0.99569 1.70071 1.47453 1.12113 1.29179 0.85800 0.80381 0.78151 0.79266 1.19283 1.20233 1.15268 0.92370 0.89507 0.91540 0.94926 0.90709 0.90210 0.92084 0.90256 0.94560 0.89588 0.87148 0.89801 0.90303 0.94587 0.89652 0.89384 0.95175 0.92815 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.13 8.83 71.98 0.64 -4.50 16 2 C 0.15 4.01 2.59 45.35 0.12 4.13 16 3 H 0.07 2.04 7.61 -2.38 -0.02 2.02 16 4 C 0.09 1.57 2.20 46.11 0.10 1.68 16 5 H 0.07 1.14 7.84 -2.39 -0.02 1.12 16 6 N -0.55 -9.64 4.84 -916.24 -4.44 -14.08 16 7 C 0.03 0.31 9.36 127.69 1.19 1.50 16 8 C 0.02 0.25 8.53 127.69 1.09 1.34 16 9 C -0.11 -1.68 5.45 31.99 0.17 -1.50 16 10 C 0.11 2.30 6.98 86.86 0.61 2.91 16 11 N -1.01 -29.71 3.46 -484.26 -1.67 -31.39 16 12 S 2.80 113.80 6.22 -56.49 -0.35 113.45 16 13 O -1.01 -43.00 16.80 -128.00 -2.15 -45.15 16 14 O -1.00 -48.62 14.27 -128.00 -1.83 -50.44 16 15 N -1.00 -41.58 3.23 -543.24 -1.75 -43.33 16 16 C 0.10 3.34 10.33 127.77 1.32 4.66 16 17 C 0.24 11.35 4.19 85.64 0.36 11.71 16 18 C -0.54 -32.46 9.94 25.60 0.25 -32.20 16 19 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 20 C 0.01 0.51 5.47 84.66 0.46 0.98 16 21 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 22 Si 0.94 43.50 27.47 68.60 1.88 45.38 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.23 -9.29 6.54 99.48 0.65 -8.64 16 26 H 0.06 2.05 5.79 -2.38 -0.01 2.04 16 27 H 0.09 1.92 6.23 -2.39 -0.01 1.90 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 31 H 0.08 0.80 7.15 -2.39 -0.02 0.78 16 32 H 0.06 1.20 5.84 -2.39 -0.01 1.19 16 33 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 34 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 2.28 7.79 -2.39 -0.02 2.26 16 41 H 0.09 2.57 7.94 -2.39 -0.02 2.55 16 42 H 0.03 1.43 7.04 -2.38 -0.02 1.41 16 43 H 0.05 2.33 7.01 -2.39 -0.02 2.31 16 44 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -79.03 352.77 -2.78 -81.81 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.91 Total: 13.68 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 6.32 Total: -9.30 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -7.57 Total: -149.44 kcal Atomic # 8 Polarization: -91.61 SS G_CDS: -3.98 Total: -95.59 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: 113.80 SS G_CDS: -0.35 Total: 113.45 kcal Total: -79.03 -2.78 -81.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.084 kcal (2) G-P(sol) polarization free energy of solvation -79.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds