Wall clock time and date at job start Fri Apr 10 2020 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.86799 * 2 1 4 4 C 1.54320 * 109.88282 * 121.17279 * 2 1 3 5 5 H 1.09004 * 110.72354 * 23.24514 * 4 2 1 6 6 N 1.46905 * 110.72153 * 259.97653 * 4 2 1 7 7 C 1.46899 * 110.99981 * 63.76073 * 6 4 2 8 8 C 1.46900 * 110.99922 * 187.71258 * 6 4 2 9 9 C 1.55157 * 102.94273 * 141.61229 * 4 2 1 10 10 C 1.55127 * 101.48420 * 324.33273 * 9 4 2 11 11 N 1.47017 * 109.88419 * 238.98053 * 2 1 3 12 12 S 1.65604 * 125.64739 * 61.60878 * 11 2 1 13 13 O 1.42108 * 106.40052 * 336.45539 * 12 11 2 14 14 O 1.42099 * 106.40154 * 203.53961 * 12 11 2 15 15 N 1.65598 * 107.22226 * 89.99542 * 12 11 2 16 16 C 1.46498 * 119.99844 * 89.99569 * 15 12 11 17 17 C 1.46500 * 120.00370 * 270.00222 * 15 12 11 18 18 C 1.50692 * 109.47235 * 265.00187 * 17 15 12 19 19 H 1.08004 * 119.99720 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00346 * 179.97438 * 18 17 15 21 21 N 1.31507 * 119.99572 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00177 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47025 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46934 * 120.00134 * 22 20 18 25 25 H 1.48497 * 109.47101 * 240.00149 * 22 20 18 26 26 H 1.09003 * 109.46545 * 179.56103 * 1 2 3 27 27 H 1.08997 * 109.46791 * 299.56210 * 1 2 3 28 28 H 1.09002 * 109.46713 * 59.56846 * 1 2 3 29 29 H 1.09001 * 109.47353 * 60.00044 * 7 6 4 30 30 H 1.09000 * 109.47042 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47095 * 300.00323 * 7 6 4 32 32 H 1.09002 * 109.46934 * 65.53387 * 8 6 4 33 33 H 1.09006 * 109.46815 * 185.52527 * 8 6 4 34 34 H 1.08999 * 109.47365 * 305.52848 * 8 6 4 35 35 H 1.09001 * 110.99968 * 82.57751 * 9 4 2 36 36 H 1.08998 * 111.00078 * 206.38501 * 9 4 2 37 37 H 1.09004 * 110.49289 * 278.45166 * 10 9 4 38 38 H 1.09001 * 110.33994 * 156.06105 * 10 9 4 39 39 H 1.08996 * 109.47747 * 270.00752 * 16 15 12 40 40 H 1.09006 * 109.46960 * 30.00826 * 16 15 12 41 41 H 1.09005 * 109.47152 * 150.00186 * 16 15 12 42 42 H 1.09011 * 109.46943 * 24.99928 * 17 15 12 43 43 H 1.09001 * 109.47385 * 144.99354 * 17 15 12 44 44 H 0.97002 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4481 1.6163 6 7 2.4566 0.1956 2.2907 7 6 1.3036 0.9682 2.7721 8 6 3.1245 -0.4993 3.3992 9 6 3.2877 -1.5151 0.6903 10 6 2.8100 -1.8814 -0.7394 11 7 2.0301 -0.7125 -1.1848 12 16 1.7566 -0.2778 -2.7592 13 8 0.5688 0.5023 -2.7595 14 8 1.9111 -1.4588 -3.5342 15 7 2.9841 0.7395 -3.2073 16 6 4.2084 0.1940 -3.7986 17 6 2.8458 2.1848 -3.0123 18 6 2.3412 2.8172 -4.2836 19 1 2.1436 2.2039 -5.1503 20 6 2.1316 4.1788 -4.3404 21 7 2.3717 4.9255 -3.2848 22 14 1.5067 4.9628 -5.9166 23 1 1.3158 3.9132 -6.9496 24 1 0.2111 5.6389 -5.6532 25 1 2.4959 5.9594 -6.3997 26 1 -0.3632 -1.0277 -0.0079 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5205 -0.8861 29 1 0.5565 0.2886 3.1821 30 1 1.6290 1.6609 3.5482 31 1 0.8698 1.5280 1.9434 32 1 4.0651 -0.9236 3.0480 33 1 3.3234 0.2083 4.2043 34 1 2.4809 -1.2978 3.7681 35 1 4.1655 -0.8696 0.6593 36 1 3.4857 -2.4123 1.2768 37 1 2.1803 -2.7708 -0.7151 38 1 3.6657 -2.0392 -1.3959 39 1 4.9259 -0.0281 -3.0086 40 1 3.9728 -0.7205 -4.3430 41 1 4.6376 0.9247 -4.4842 42 1 2.1383 2.3766 -2.2054 43 1 3.8153 2.6111 -2.7543 44 1 2.2239 5.8834 -3.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:59 Heat of formation + Delta-G solvation = -58.072394 kcal Electronic energy + Delta-G solvation = -25326.570982 eV Core-core repulsion = 21827.262802 eV Total energy + Delta-G solvation = -3499.308180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46178 -36.61997 -35.94723 -35.42950 -35.12215 -32.39856 -31.46197 -29.89900 -27.73064 -27.48795 -25.96417 -24.99819 -22.94085 -22.26594 -21.70190 -20.27061 -18.31352 -17.32750 -16.85101 -16.42816 -16.17961 -15.41513 -14.98521 -14.76874 -14.44103 -14.27303 -13.69698 -13.51280 -13.30825 -13.28027 -12.98098 -12.69405 -12.40883 -12.30907 -12.14967 -12.09244 -11.86577 -11.58655 -11.39465 -11.37494 -11.23764 -11.10644 -11.05990 -11.04685 -10.84694 -10.66605 -10.50480 -10.28154 -9.99377 -9.70475 -8.79034 -8.46708 -8.41055 -8.00375 -6.03257 -4.07104 1.19969 3.32860 3.40341 3.45379 3.49519 3.82216 4.13435 4.40760 4.47731 4.59684 4.98969 5.04309 5.08060 5.21934 5.24814 5.31036 5.34233 5.43029 5.50117 5.54168 5.58474 5.67544 5.68700 5.73319 5.78176 5.83389 5.94288 6.03921 6.11019 6.16751 6.30863 6.41645 6.53716 6.65656 6.74208 6.90736 6.99266 7.28455 7.45122 7.65587 7.94336 8.24188 8.95526 9.57914 11.05267 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.005177 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.829257 B = 5407.705616 C = 6134.877015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.088 0.912 4 C 0.078 3.922 5 H 0.057 0.943 6 N -0.536 5.536 7 C 0.017 3.983 8 C 0.026 3.974 9 C -0.123 4.123 10 C 0.126 3.874 11 N -1.017 6.017 12 S 2.793 3.207 13 O -0.956 6.956 14 O -0.995 6.995 15 N -0.995 5.995 16 C 0.096 3.904 17 C 0.258 3.742 18 C -0.527 4.527 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.284 1.284 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.023 0.977 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -12.382 12.904 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.052 3.948 3 H 0.106 0.894 4 C -0.032 4.032 5 H 0.074 0.926 6 N -0.260 5.260 7 C -0.131 4.131 8 C -0.122 4.122 9 C -0.162 4.162 10 C -0.001 4.001 11 N -0.856 5.856 12 S 2.803 3.197 13 O -0.940 6.940 14 O -0.980 6.980 15 N -0.837 5.837 16 C -0.051 4.051 17 C 0.136 3.864 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.210 1.210 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.897 -12.116 12.119 17.242 hybrid contribution -0.561 0.152 -0.154 0.601 sum 1.336 -11.964 11.966 16.974 Atomic orbital electron populations 1.22644 0.94997 1.02416 1.04658 1.21173 0.93661 0.96553 0.83366 0.89356 1.22790 0.96364 0.92606 0.91465 0.92560 1.61989 1.27387 1.25603 1.11011 1.22547 0.91743 0.97659 1.01117 1.22377 0.98948 0.97551 0.93357 1.22909 0.98264 0.99876 0.95178 1.21869 0.94763 0.88228 0.95194 1.59424 1.66506 1.36734 1.22908 1.01627 0.73972 0.72484 0.71599 1.93582 1.44416 1.70476 1.85554 1.93514 1.87371 1.49200 1.67883 1.57681 1.31797 1.19694 1.74577 1.21338 0.86657 0.99306 0.97797 1.19040 0.97795 0.72282 0.97237 1.21531 1.44184 0.92551 0.98413 0.92197 1.24921 0.95300 0.97091 0.96656 1.69932 1.48913 1.05790 1.28776 0.86476 0.78563 0.79227 0.83389 1.19662 1.20813 1.20981 0.92815 0.91684 0.88672 0.95687 0.91273 0.90325 0.91166 0.91428 0.95835 0.89385 0.90619 0.91776 0.90767 0.94353 0.91744 0.90397 0.94484 0.94812 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 8.84 37.16 0.33 -2.46 16 2 C 0.16 2.40 2.61 -66.95 -0.17 2.22 16 3 H 0.09 1.50 7.80 -51.93 -0.41 1.10 16 4 C 0.08 0.91 2.18 -65.88 -0.14 0.77 16 5 H 0.06 0.62 7.85 -51.93 -0.41 0.22 16 6 N -0.54 -6.09 4.84 -240.95 -1.17 -7.25 16 7 C 0.02 0.18 8.67 60.06 0.52 0.70 16 8 C 0.03 0.23 9.26 60.06 0.56 0.78 16 9 C -0.12 -1.30 5.40 -24.46 -0.13 -1.43 16 10 C 0.13 1.58 6.99 -2.41 -0.02 1.57 16 11 N -1.02 -16.49 3.45 -104.30 -0.36 -16.85 16 12 S 2.79 57.51 6.27 -107.50 -0.67 56.84 16 13 O -0.96 -22.82 14.27 -57.17 -0.82 -23.63 16 14 O -1.00 -21.36 16.32 -57.17 -0.93 -22.30 16 15 N -1.00 -21.33 3.23 -123.05 -0.40 -21.72 16 16 C 0.10 1.70 10.68 59.85 0.64 2.34 16 17 C 0.26 6.59 5.08 -5.20 -0.03 6.56 16 18 C -0.53 -14.98 9.38 -34.44 -0.32 -15.31 16 19 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 22 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.81 6.14 -51.93 -0.32 0.49 16 28 H 0.09 1.72 5.79 -51.93 -0.30 1.42 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.08 0.92 5.85 -51.93 -0.30 0.61 16 32 H 0.07 0.57 7.33 -51.93 -0.38 0.19 16 33 H 0.07 0.53 8.02 -51.93 -0.42 0.12 16 34 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 41 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 42 H 0.04 1.00 7.61 -51.92 -0.40 0.61 16 43 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -33.21 355.96 -9.61 -42.83 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.48 Total: -2.19 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 1.13 Total: -2.56 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.19 Total: -71.34 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.75 Total: -45.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 57.51 SS G_CDS: -0.67 Total: 56.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.21 -9.61 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.244 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds