Wall clock time and date at job start Fri Apr 10 2020 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.86799 * 2 1 4 4 C 1.54320 * 109.88282 * 121.17279 * 2 1 3 5 5 H 1.09004 * 110.72354 * 23.24514 * 4 2 1 6 6 N 1.46905 * 110.72153 * 259.97653 * 4 2 1 7 7 C 1.46899 * 110.99981 * 63.76073 * 6 4 2 8 8 C 1.46900 * 110.99922 * 187.71258 * 6 4 2 9 9 C 1.55157 * 102.94273 * 141.61229 * 4 2 1 10 10 C 1.55127 * 101.48420 * 324.33273 * 9 4 2 11 11 N 1.47017 * 109.88419 * 238.98053 * 2 1 3 12 12 S 1.65604 * 125.64739 * 61.60878 * 11 2 1 13 13 O 1.42108 * 106.40052 * 336.45539 * 12 11 2 14 14 O 1.42099 * 106.40154 * 203.53961 * 12 11 2 15 15 N 1.65598 * 107.22226 * 89.99542 * 12 11 2 16 16 C 1.46498 * 119.99844 * 89.99569 * 15 12 11 17 17 C 1.46500 * 120.00370 * 270.00222 * 15 12 11 18 18 C 1.50692 * 109.47235 * 265.00187 * 17 15 12 19 19 H 1.08004 * 119.99720 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00346 * 179.97438 * 18 17 15 21 21 N 1.31507 * 119.99572 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00177 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47025 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46934 * 120.00134 * 22 20 18 25 25 H 1.48497 * 109.47101 * 240.00149 * 22 20 18 26 26 H 1.09003 * 109.46545 * 179.56103 * 1 2 3 27 27 H 1.08997 * 109.46791 * 299.56210 * 1 2 3 28 28 H 1.09002 * 109.46713 * 59.56846 * 1 2 3 29 29 H 1.09001 * 109.47353 * 60.00044 * 7 6 4 30 30 H 1.09000 * 109.47042 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47095 * 300.00323 * 7 6 4 32 32 H 1.09002 * 109.46934 * 65.53387 * 8 6 4 33 33 H 1.09006 * 109.46815 * 185.52527 * 8 6 4 34 34 H 1.08999 * 109.47365 * 305.52848 * 8 6 4 35 35 H 1.09001 * 110.99968 * 82.57751 * 9 4 2 36 36 H 1.08998 * 111.00078 * 206.38501 * 9 4 2 37 37 H 1.09004 * 110.49289 * 278.45166 * 10 9 4 38 38 H 1.09001 * 110.33994 * 156.06105 * 10 9 4 39 39 H 1.08996 * 109.47747 * 270.00752 * 16 15 12 40 40 H 1.09006 * 109.46960 * 30.00826 * 16 15 12 41 41 H 1.09005 * 109.47152 * 150.00186 * 16 15 12 42 42 H 1.09011 * 109.46943 * 24.99928 * 17 15 12 43 43 H 1.09001 * 109.47385 * 144.99354 * 17 15 12 44 44 H 0.97002 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4481 1.6163 6 7 2.4566 0.1956 2.2907 7 6 1.3036 0.9682 2.7721 8 6 3.1245 -0.4993 3.3992 9 6 3.2877 -1.5151 0.6903 10 6 2.8100 -1.8814 -0.7394 11 7 2.0301 -0.7125 -1.1848 12 16 1.7566 -0.2778 -2.7592 13 8 0.5688 0.5023 -2.7595 14 8 1.9111 -1.4588 -3.5342 15 7 2.9841 0.7395 -3.2073 16 6 4.2084 0.1940 -3.7986 17 6 2.8458 2.1848 -3.0123 18 6 2.3412 2.8172 -4.2836 19 1 2.1436 2.2039 -5.1503 20 6 2.1316 4.1788 -4.3404 21 7 2.3717 4.9255 -3.2848 22 14 1.5067 4.9628 -5.9166 23 1 1.3158 3.9132 -6.9496 24 1 0.2111 5.6389 -5.6532 25 1 2.4959 5.9594 -6.3997 26 1 -0.3632 -1.0277 -0.0079 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5205 -0.8861 29 1 0.5565 0.2886 3.1821 30 1 1.6290 1.6609 3.5482 31 1 0.8698 1.5280 1.9434 32 1 4.0651 -0.9236 3.0480 33 1 3.3234 0.2083 4.2043 34 1 2.4809 -1.2978 3.7681 35 1 4.1655 -0.8696 0.6593 36 1 3.4857 -2.4123 1.2768 37 1 2.1803 -2.7708 -0.7151 38 1 3.6657 -2.0392 -1.3959 39 1 4.9259 -0.0281 -3.0086 40 1 3.9728 -0.7205 -4.3430 41 1 4.6376 0.9247 -4.4842 42 1 2.1383 2.3766 -2.2054 43 1 3.8153 2.6111 -2.7543 44 1 2.2239 5.8834 -3.3245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:59 Heat of formation + Delta-G solvation = -83.365536 kcal Electronic energy + Delta-G solvation = -25327.667775 eV Core-core repulsion = 21827.262802 eV Total energy + Delta-G solvation = -3500.404973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47333 -38.33363 -37.22475 -36.92177 -36.83831 -34.51542 -32.53039 -30.99585 -29.68022 -28.25089 -27.03771 -26.71180 -24.22398 -23.87155 -22.85526 -21.24242 -19.81656 -18.93315 -18.41926 -18.30569 -17.54106 -16.99649 -16.40006 -15.97208 -15.61262 -15.28134 -15.19838 -14.92640 -14.73042 -14.54412 -14.22680 -14.02203 -13.93523 -13.68638 -13.35151 -13.31721 -13.17403 -13.04603 -12.96351 -12.91868 -12.78212 -12.48413 -12.44882 -12.30315 -12.27842 -12.09035 -11.97618 -11.81141 -11.72181 -11.42956 -10.61679 -10.06010 -9.77286 -9.25772 -8.21110 -6.33536 -0.39854 1.37436 1.39801 1.51722 2.01241 2.38767 2.55055 2.98031 3.09444 3.26134 3.50513 3.72705 4.05307 4.09897 4.25608 4.27721 4.35049 4.45506 4.51703 4.52951 4.66205 4.68040 4.69626 4.74138 4.77720 4.84966 4.91576 5.01823 5.03393 5.08883 5.11761 5.17048 5.20013 5.26282 5.39881 5.41489 5.53885 5.69550 5.94045 6.09268 6.11926 6.17095 6.74708 7.35406 8.86749 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.005177 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.829257 B = 5407.705616 C = 6134.877015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.154 3.846 3 H 0.058 0.942 4 C 0.086 3.914 5 H 0.073 0.927 6 N -0.556 5.556 7 C 0.017 3.983 8 C 0.027 3.973 9 C -0.111 4.111 10 C 0.113 3.887 11 N -1.015 6.015 12 S 2.805 3.195 13 O -0.998 6.998 14 O -1.006 7.006 15 N -1.005 6.005 16 C 0.089 3.911 17 C 0.277 3.723 18 C -0.549 4.549 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.957 3.043 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.268 1.268 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.013 0.987 43 H 0.024 0.976 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -13.900 14.023 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.048 3.952 3 H 0.077 0.923 4 C -0.024 4.024 5 H 0.090 0.910 6 N -0.280 5.280 7 C -0.131 4.131 8 C -0.121 4.121 9 C -0.150 4.150 10 C -0.012 4.012 11 N -0.856 5.856 12 S 2.816 3.184 13 O -0.982 6.982 14 O -0.990 6.990 15 N -0.846 5.846 16 C -0.056 4.056 17 C 0.153 3.847 18 C -0.588 4.588 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.563 5.563 22 Si 0.782 3.218 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.031 0.969 43 H 0.042 0.958 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.661 -13.654 13.226 19.195 hybrid contribution -0.774 0.575 -0.423 1.053 sum 1.887 -13.078 12.803 18.399 Atomic orbital electron populations 1.22595 0.95091 1.03021 1.03765 1.21274 0.93712 0.95651 0.84591 0.92348 1.22703 0.97246 0.92350 0.90065 0.90977 1.61957 1.27840 1.26172 1.12072 1.22529 0.92024 0.97973 1.00564 1.22428 0.99147 0.97909 0.92596 1.22902 0.97169 1.01005 0.93946 1.22280 0.95036 0.87250 0.96644 1.59034 1.67005 1.37897 1.21648 1.00980 0.73168 0.71868 0.72397 1.93535 1.46566 1.71499 1.86581 1.93488 1.87390 1.49072 1.69023 1.57619 1.33227 1.18093 1.75687 1.21557 0.85967 0.99223 0.98876 1.18544 0.96224 0.74544 0.95355 1.21833 1.44713 0.93158 0.99125 0.93135 1.25743 0.95351 0.97619 0.99902 1.70021 1.49463 1.06258 1.30540 0.85526 0.78325 0.78468 0.79510 1.19478 1.20395 1.19330 0.91288 0.89718 0.92503 0.94315 0.90342 0.92411 0.90380 0.90779 0.94599 0.90007 0.86977 0.90017 0.89939 0.91095 0.90733 0.91060 0.96908 0.95806 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.58 8.84 71.98 0.64 -4.94 16 2 C 0.15 4.65 2.61 45.34 0.12 4.76 16 3 H 0.06 2.10 7.80 -2.39 -0.02 2.08 16 4 C 0.09 1.84 2.18 46.10 0.10 1.94 16 5 H 0.07 1.34 7.85 -2.38 -0.02 1.32 16 6 N -0.56 -11.55 4.84 -916.22 -4.44 -15.99 16 7 C 0.02 0.34 8.67 127.69 1.11 1.44 16 8 C 0.03 0.38 9.26 127.69 1.18 1.56 16 9 C -0.11 -1.99 5.40 32.06 0.17 -1.82 16 10 C 0.11 2.57 6.99 86.93 0.61 3.18 16 11 N -1.01 -32.48 3.45 -483.88 -1.67 -34.15 16 12 S 2.81 117.59 6.27 -56.49 -0.35 117.24 16 13 O -1.00 -49.85 14.27 -128.00 -1.83 -51.67 16 14 O -1.01 -42.91 16.32 -128.00 -2.09 -45.00 16 15 N -1.00 -43.91 3.23 -543.22 -1.75 -45.66 16 16 C 0.09 3.13 10.68 127.77 1.36 4.49 16 17 C 0.28 14.66 5.08 85.63 0.43 15.10 16 18 C -0.55 -32.05 9.38 25.60 0.24 -31.81 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.01 0.78 5.46 84.66 0.46 1.24 16 21 N -0.92 -55.17 13.29 21.45 0.28 -54.88 16 22 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 2.13 6.14 -2.39 -0.01 2.11 16 28 H 0.06 2.16 5.79 -2.39 -0.01 2.15 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 31 H 0.06 1.36 5.85 -2.38 -0.01 1.35 16 32 H 0.08 1.00 7.33 -2.39 -0.02 0.98 16 33 H 0.07 0.97 8.02 -2.38 -0.02 0.95 16 34 H 0.04 0.44 8.13 -2.39 -0.02 0.42 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.07 2.45 7.02 -2.38 -0.02 2.43 16 41 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 42 H 0.01 0.74 7.61 -2.38 -0.02 0.72 16 43 H 0.02 1.29 8.11 -2.39 -0.02 1.27 16 44 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -73.23 355.96 -2.43 -75.65 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.96 Total: 11.79 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.43 Total: -4.85 kcal Atomic # 7 Polarization: -143.11 SS G_CDS: -7.57 Total: -150.68 kcal Atomic # 8 Polarization: -92.75 SS G_CDS: -3.92 Total: -96.67 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 117.59 SS G_CDS: -0.35 Total: 117.24 kcal Total: -73.23 -2.43 -75.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.713 kcal (2) G-P(sol) polarization free energy of solvation -73.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds