Wall clock time and date at job start Fri Apr 10 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.46498 * 119.99874 * 274.99798 * 3 2 1 5 5 C 1.50703 * 109.46907 * 275.00275 * 4 3 2 6 6 H 1.08001 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00331 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46986 * 89.99908 * 9 7 5 11 11 H 1.48493 * 109.47165 * 210.00277 * 9 7 5 12 12 H 1.48496 * 109.46962 * 330.00217 * 9 7 5 13 13 S 1.65595 * 119.99850 * 95.00088 * 3 2 1 14 14 O 1.42105 * 106.40149 * 203.53728 * 13 3 2 15 15 O 1.42098 * 106.40317 * 336.45602 * 13 3 2 16 16 N 1.65606 * 107.22013 * 89.99911 * 13 3 2 17 17 C 1.47068 * 136.05224 * 269.62921 * 16 13 3 18 18 C 1.53759 * 87.88385 * 152.96027 * 17 16 13 19 19 C 1.53009 * 114.08476 * 139.77919 * 18 17 16 20 20 N 1.46892 * 109.47130 * 91.56022 * 19 18 17 21 21 C 1.46900 * 111.00101 * 169.99741 * 20 19 18 22 22 C 1.46904 * 111.00246 * 293.95458 * 20 19 18 23 23 C 1.47058 * 136.06119 * 89.99708 * 16 13 3 24 24 H 1.09003 * 109.46581 * 60.00015 * 1 2 3 25 25 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47081 * 300.00493 * 1 2 3 27 27 H 1.08996 * 109.46879 * 239.99339 * 2 1 3 28 28 H 1.09003 * 109.46581 * 119.99985 * 2 1 3 29 29 H 1.09001 * 109.47378 * 34.99890 * 4 3 2 30 30 H 1.09002 * 109.46925 * 155.00631 * 4 3 2 31 31 H 0.96995 * 120.00625 * 179.97438 * 8 7 5 32 32 H 1.08998 * 113.46338 * 267.69113 * 17 16 13 33 33 H 1.08998 * 113.46903 * 38.13133 * 17 16 13 34 34 H 1.08995 * 114.39516 * 272.67057 * 18 17 16 35 35 H 1.08994 * 109.46559 * 211.56366 * 19 18 17 36 36 H 1.09002 * 109.47005 * 331.55614 * 19 18 17 37 37 H 1.09006 * 109.46525 * 59.99969 * 21 20 19 38 38 H 1.09001 * 109.47187 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47268 * 300.00203 * 21 20 19 40 40 H 1.09000 * 109.46848 * 59.99820 * 22 20 19 41 41 H 1.09002 * 109.47129 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.46857 * 299.99983 * 22 20 19 43 43 H 1.09005 * 113.46436 * 321.86574 * 23 16 13 44 44 H 1.09000 * 113.46863 * 92.30073 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1724 1.1115 -1.3835 7 6 3.8531 2.3611 -3.0843 8 7 5.0196 2.0823 -3.6238 9 14 2.6815 3.5329 -3.9468 10 1 2.9452 4.9213 -3.4907 11 1 2.8867 3.4466 -5.4149 12 1 1.2811 3.1622 -3.6201 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1998 15 8 1.6868 1.4415 2.4447 16 7 4.0145 1.8136 1.7138 17 6 4.7859 0.7729 2.4100 18 6 5.9538 1.0826 1.4591 19 6 7.3268 1.0784 2.1343 20 7 7.9147 -0.2645 2.0402 21 6 9.3217 -0.2540 2.4623 22 6 7.1376 -1.2354 2.8223 23 6 5.2917 2.4655 1.3878 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.3618 1.8096 -1.9453 30 1 2.0923 3.1802 -1.0756 31 1 5.2715 2.4848 -4.4696 32 1 4.9985 1.0140 3.4515 33 1 4.3755 -0.2290 2.2840 34 1 5.9305 0.5270 0.5216 35 1 7.9786 1.7962 1.6364 36 1 7.2167 1.3542 3.1831 37 1 9.3883 0.0851 3.4961 38 1 9.7322 -1.2606 2.3832 39 1 9.8883 0.4213 1.8212 40 1 6.1165 -1.2735 2.4428 41 1 7.5949 -2.2210 2.7355 42 1 7.1252 -0.9319 3.8690 43 1 5.3123 2.9057 0.3908 44 1 5.6377 3.1529 2.1597 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601423915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:03 Heat of formation + Delta-G solvation = -27.988829 kcal Electronic energy + Delta-G solvation = -24969.393301 eV Core-core repulsion = 21471.389643 eV Total energy + Delta-G solvation = -3498.003658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.51250 -36.72372 -36.69298 -36.14373 -35.27323 -32.62632 -30.22814 -29.91316 -27.71702 -27.12786 -25.71482 -25.54923 -22.89905 -21.95988 -21.47534 -19.91724 -18.22563 -17.24570 -17.01059 -16.63471 -15.89255 -15.82097 -15.31579 -14.94795 -14.49830 -14.16285 -14.03352 -13.54491 -13.37260 -13.04635 -12.72282 -12.49703 -12.45609 -12.31015 -12.08150 -11.99875 -11.93439 -11.77436 -11.56963 -11.53707 -11.44055 -11.34699 -11.13551 -10.97946 -10.57308 -10.47497 -10.32800 -10.14370 -10.09838 -9.56938 -8.72569 -8.62714 -8.34061 -8.10748 -6.13847 -4.13953 1.14895 3.27142 3.33335 3.37509 3.42391 3.92855 4.05822 4.36690 4.54144 4.77115 5.01850 5.10646 5.18419 5.21463 5.29059 5.34984 5.37144 5.51200 5.54489 5.59897 5.66867 5.70946 5.74236 5.77652 5.81402 5.86758 5.97625 6.02101 6.12138 6.24909 6.32566 6.52929 6.60918 6.63695 6.83702 6.89988 7.01485 7.07410 7.15538 7.42602 7.56786 8.43363 8.90391 9.46992 10.98063 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.006005 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.680553 B = 4661.754336 C = 5940.854453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.983 5.983 4 C 0.214 3.786 5 C -0.539 4.539 6 H 0.083 0.917 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 S 2.809 3.191 14 O -0.979 6.979 15 O -0.994 6.994 16 N -1.044 6.044 17 C 0.130 3.870 18 C -0.115 4.115 19 C 0.066 3.934 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.020 3.980 23 C 0.136 3.864 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.021 0.979 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.094 0.906 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 -5.166 11.631 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.823 5.823 4 C 0.090 3.910 5 C -0.578 4.578 6 H 0.101 0.899 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.820 3.180 14 O -0.963 6.963 15 O -0.978 6.978 16 N -0.882 5.882 17 C 0.004 3.996 18 C -0.136 4.136 19 C -0.063 4.063 20 N -0.267 5.267 21 C -0.123 4.123 22 C -0.128 4.128 23 C 0.010 3.990 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.112 0.888 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.617 -4.701 11.481 12.679 hybrid contribution -0.264 0.650 -0.026 0.702 sum 2.353 -4.052 11.455 12.376 Atomic orbital electron populations 1.22219 0.96909 1.01581 1.02247 1.21000 0.93507 0.82623 1.02504 1.57567 1.78220 1.23090 1.23462 1.19586 0.98323 0.92018 0.81033 1.21450 1.00875 1.29137 1.06334 0.89898 1.24834 0.94925 0.95997 0.96864 1.69885 1.20408 1.43758 1.18853 0.86992 0.82244 0.82302 0.79115 1.19803 1.21082 1.18921 1.00980 0.71346 0.73062 0.72659 1.93554 1.85595 1.31021 1.86138 1.93534 1.70063 1.76645 1.57591 1.60368 1.21377 1.38060 1.68433 1.22640 0.89831 0.91461 0.95683 1.23218 0.91531 0.98310 1.00508 1.22109 0.95701 0.90070 0.98427 1.61945 1.02266 1.07192 1.55343 1.22369 0.89399 1.02350 0.98184 1.22486 0.99475 0.95885 0.94939 1.22383 0.79733 0.94799 1.02104 0.92255 0.92099 0.92629 0.89891 0.91767 0.94595 0.94142 0.92557 0.90924 0.91134 0.86072 0.90032 0.94645 0.96022 0.91566 0.91284 0.90686 0.91711 0.95894 0.88779 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.25 6.06 -4.04 -0.02 2.23 16 3 N -0.98 -20.12 2.82 -115.66 -0.33 -20.45 16 4 C 0.21 5.01 4.50 -5.19 -0.02 4.99 16 5 C -0.54 -14.09 9.94 -34.44 -0.34 -14.44 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 9 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 13 S 2.81 57.19 6.64 -107.50 -0.71 56.48 16 14 O -0.98 -22.85 16.69 -57.17 -0.95 -23.81 16 15 O -0.99 -20.64 17.11 -57.17 -0.98 -21.62 16 16 N -1.04 -18.24 4.29 -125.04 -0.54 -18.78 16 17 C 0.13 1.80 6.93 -8.37 -0.06 1.74 16 18 C -0.11 -1.61 3.68 -89.97 -0.33 -1.95 16 19 C 0.07 0.76 4.91 -3.82 -0.02 0.75 16 20 N -0.54 -6.34 5.02 -251.26 -1.26 -7.60 16 21 C 0.03 0.24 9.57 60.06 0.57 0.81 16 22 C 0.02 0.21 9.07 60.07 0.55 0.75 16 23 C 0.14 2.17 8.30 -8.52 -0.07 2.10 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 28 H 0.06 1.01 7.61 -51.93 -0.40 0.62 16 29 H 0.04 0.83 7.17 -51.93 -0.37 0.45 16 30 H 0.04 1.00 6.34 -51.93 -0.33 0.67 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 33 H 0.07 0.92 7.40 -51.93 -0.38 0.53 16 34 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.04 0.37 7.78 -51.93 -0.40 -0.03 16 37 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 40 H 0.07 0.79 5.69 -51.93 -0.30 0.50 16 41 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.07 0.97 8.10 -51.93 -0.42 0.54 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -31.90 365.29 -10.29 -42.19 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.66 Total: 0.10 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 0.53 Total: -3.26 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.35 Total: -71.69 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.93 Total: -45.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 57.19 SS G_CDS: -0.71 Total: 56.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.90 -10.29 -42.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.202 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds