Wall clock time and date at job start Fri Apr 10 2020 17:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.46498 * 119.99874 * 274.99798 * 3 2 1 5 5 C 1.50703 * 109.46907 * 275.00275 * 4 3 2 6 6 H 1.08001 * 120.00049 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99988 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00331 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46986 * 89.99908 * 9 7 5 11 11 H 1.48493 * 109.47165 * 210.00277 * 9 7 5 12 12 H 1.48496 * 109.46962 * 330.00217 * 9 7 5 13 13 S 1.65595 * 119.99850 * 95.00088 * 3 2 1 14 14 O 1.42105 * 106.40149 * 203.53728 * 13 3 2 15 15 O 1.42098 * 106.40317 * 336.45602 * 13 3 2 16 16 N 1.65606 * 107.22013 * 89.99911 * 13 3 2 17 17 C 1.47068 * 136.05224 * 269.62921 * 16 13 3 18 18 C 1.53759 * 87.88385 * 152.96027 * 17 16 13 19 19 C 1.53009 * 114.08476 * 139.77919 * 18 17 16 20 20 N 1.46892 * 109.47130 * 91.56022 * 19 18 17 21 21 C 1.46900 * 111.00101 * 169.99741 * 20 19 18 22 22 C 1.46904 * 111.00246 * 293.95458 * 20 19 18 23 23 C 1.47058 * 136.06119 * 89.99708 * 16 13 3 24 24 H 1.09003 * 109.46581 * 60.00015 * 1 2 3 25 25 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47081 * 300.00493 * 1 2 3 27 27 H 1.08996 * 109.46879 * 239.99339 * 2 1 3 28 28 H 1.09003 * 109.46581 * 119.99985 * 2 1 3 29 29 H 1.09001 * 109.47378 * 34.99890 * 4 3 2 30 30 H 1.09002 * 109.46925 * 155.00631 * 4 3 2 31 31 H 0.96995 * 120.00625 * 179.97438 * 8 7 5 32 32 H 1.08998 * 113.46338 * 267.69113 * 17 16 13 33 33 H 1.08998 * 113.46903 * 38.13133 * 17 16 13 34 34 H 1.08995 * 114.39516 * 272.67057 * 18 17 16 35 35 H 1.08994 * 109.46559 * 211.56366 * 19 18 17 36 36 H 1.09002 * 109.47005 * 331.55614 * 19 18 17 37 37 H 1.09006 * 109.46525 * 59.99969 * 21 20 19 38 38 H 1.09001 * 109.47187 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.47268 * 300.00203 * 21 20 19 40 40 H 1.09000 * 109.46848 * 59.99820 * 22 20 19 41 41 H 1.09002 * 109.47129 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.46857 * 299.99983 * 22 20 19 43 43 H 1.09005 * 113.46436 * 321.86574 * 23 16 13 44 44 H 1.09000 * 113.46863 * 92.30073 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1724 1.1115 -1.3835 7 6 3.8531 2.3611 -3.0843 8 7 5.0196 2.0823 -3.6238 9 14 2.6815 3.5329 -3.9468 10 1 2.9452 4.9213 -3.4907 11 1 2.8867 3.4466 -5.4149 12 1 1.2811 3.1622 -3.6201 13 16 2.4122 2.1201 1.4287 14 8 2.3058 3.5186 1.1998 15 8 1.6868 1.4415 2.4447 16 7 4.0145 1.8136 1.7138 17 6 4.7859 0.7729 2.4100 18 6 5.9538 1.0826 1.4591 19 6 7.3268 1.0784 2.1343 20 7 7.9147 -0.2645 2.0402 21 6 9.3217 -0.2540 2.4623 22 6 7.1376 -1.2354 2.8223 23 6 5.2917 2.4655 1.3878 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.3618 1.8096 -1.9453 30 1 2.0923 3.1802 -1.0756 31 1 5.2715 2.4848 -4.4696 32 1 4.9985 1.0140 3.4515 33 1 4.3755 -0.2290 2.2840 34 1 5.9305 0.5270 0.5216 35 1 7.9786 1.7962 1.6364 36 1 7.2167 1.3542 3.1831 37 1 9.3883 0.0851 3.4961 38 1 9.7322 -1.2606 2.3832 39 1 9.8883 0.4213 1.8212 40 1 6.1165 -1.2735 2.4428 41 1 7.5949 -2.2210 2.7355 42 1 7.1252 -0.9319 3.8690 43 1 5.3123 2.9057 0.3908 44 1 5.6377 3.1529 2.1597 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601423915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:02 Heat of formation + Delta-G solvation = -52.428823 kcal Electronic energy + Delta-G solvation = -24970.453099 eV Core-core repulsion = 21471.389643 eV Total energy + Delta-G solvation = -3499.063456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69751 -38.36498 -37.77630 -37.64836 -36.96040 -34.64552 -31.83069 -31.04887 -28.93489 -28.51269 -26.79337 -26.75162 -24.59567 -23.24609 -22.78461 -21.07892 -19.73983 -19.04874 -18.67201 -18.30661 -17.44027 -16.90862 -16.48169 -16.15685 -15.91717 -15.73954 -15.15416 -14.86031 -14.73644 -14.56304 -14.29224 -14.09568 -13.76952 -13.57304 -13.50588 -13.30790 -13.25804 -13.14947 -13.03452 -12.80450 -12.66142 -12.63661 -12.51036 -12.35557 -12.22301 -12.12577 -11.77112 -11.61142 -11.58829 -11.26535 -10.74680 -10.05627 -9.78921 -9.16619 -8.25344 -6.28747 -0.42432 1.36242 1.39870 1.46594 1.89643 2.35675 2.48865 3.02197 3.08443 3.19571 3.54221 3.82162 3.95012 4.06174 4.32418 4.37048 4.39126 4.42383 4.52128 4.53567 4.58535 4.65507 4.66809 4.72810 4.74280 4.85900 4.90296 4.91427 4.96376 4.99734 5.06580 5.10260 5.18835 5.35925 5.38562 5.42915 5.49296 5.64519 5.82395 6.20342 6.22505 6.34560 6.76321 7.34758 8.89069 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.012226 B = 0.006005 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.680553 B = 4661.754336 C = 5940.854453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.989 5.989 4 C 0.222 3.778 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.931 5.931 9 Si 0.918 3.082 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.247 1.247 13 S 2.818 3.182 14 O -1.014 7.014 15 O -0.998 6.998 16 N -1.055 6.055 17 C 0.133 3.867 18 C -0.101 4.101 19 C 0.073 3.927 20 N -0.568 5.568 21 C 0.026 3.974 22 C 0.020 3.980 23 C 0.131 3.869 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -5.767 13.035 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.829 5.829 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.075 0.925 7 C -0.173 4.173 8 N -0.571 5.571 9 Si 0.743 3.257 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.170 1.170 13 S 2.829 3.171 14 O -0.998 6.998 15 O -0.983 6.983 16 N -0.896 5.896 17 C 0.008 3.992 18 C -0.122 4.122 19 C -0.056 4.056 20 N -0.293 5.293 21 C -0.121 4.121 22 C -0.128 4.128 23 C 0.005 3.995 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.225 -5.329 12.904 14.137 hybrid contribution -0.056 0.751 -0.400 0.853 sum 2.170 -4.578 12.504 13.491 Atomic orbital electron populations 1.22199 0.95158 1.03524 1.01700 1.21261 0.95019 0.81019 1.03122 1.57554 1.78855 1.24242 1.22267 1.19317 0.96872 0.91744 0.82310 1.21587 1.01593 1.27864 1.05957 0.92477 1.25552 0.96320 0.97659 0.97809 1.70003 1.22220 1.45379 1.19509 0.86147 0.81277 0.80073 0.78221 1.19965 1.20504 1.17007 1.00487 0.71866 0.72247 0.72494 1.93502 1.86472 1.33271 1.86567 1.93518 1.70785 1.76470 1.57483 1.60220 1.20864 1.39552 1.68939 1.22922 0.88434 0.91052 0.96780 1.22942 0.93456 0.96286 0.99514 1.22004 0.93861 0.90498 0.99194 1.61899 1.03508 1.07237 1.56613 1.22385 0.88043 1.02917 0.98792 1.22502 0.98878 0.96004 0.95421 1.22561 0.79468 0.96282 1.01185 0.92630 0.88953 0.93296 0.90256 0.90191 0.93637 0.95284 0.92507 0.87884 0.90279 0.89481 0.90112 0.92472 0.94771 0.90809 0.91477 0.91540 0.90962 0.94500 0.92466 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 10.24 71.98 0.74 -4.08 16 2 C 0.12 4.06 6.06 86.38 0.52 4.58 16 3 N -0.99 -40.28 2.82 -519.84 -1.47 -41.75 16 4 C 0.22 10.42 4.50 85.63 0.39 10.80 16 5 C -0.53 -28.34 9.94 25.60 0.25 -28.09 16 6 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 7 C 0.03 1.45 5.47 84.66 0.46 1.91 16 8 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 9 Si 0.92 42.67 27.47 68.60 1.88 44.56 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.25 -10.65 6.54 99.48 0.65 -9.99 16 13 S 2.82 113.87 6.64 -56.49 -0.38 113.50 16 14 O -1.01 -47.68 16.69 -128.00 -2.14 -49.82 16 15 O -1.00 -40.23 17.11 -128.00 -2.19 -42.42 16 16 N -1.05 -36.38 4.29 -549.50 -2.36 -38.74 16 17 C 0.13 3.45 6.93 83.26 0.58 4.02 16 18 C -0.10 -2.80 3.68 -10.37 -0.04 -2.83 16 19 C 0.07 1.59 4.91 86.31 0.42 2.01 16 20 N -0.57 -12.37 5.02 -948.84 -4.76 -17.13 16 21 C 0.03 0.45 9.57 127.69 1.22 1.67 16 22 C 0.02 0.36 9.07 127.69 1.16 1.52 16 23 C 0.13 4.18 8.30 83.18 0.69 4.87 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.08 2.70 8.11 -2.39 -0.02 2.68 16 28 H 0.08 2.40 7.61 -2.39 -0.02 2.39 16 29 H 0.05 2.05 7.17 -2.39 -0.02 2.03 16 30 H 0.03 1.44 6.34 -2.39 -0.02 1.43 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.10 2.10 7.87 -2.39 -0.02 2.08 16 33 H 0.08 1.92 7.40 -2.39 -0.02 1.90 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 36 H 0.06 1.01 7.78 -2.39 -0.02 0.99 16 37 H 0.03 0.49 8.14 -2.38 -0.02 0.48 16 38 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 39 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 40 H 0.07 1.30 5.69 -2.39 -0.01 1.29 16 41 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 42 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -68.96 365.29 -3.81 -72.77 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.90 Total: 17.20 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 6.40 Total: -3.60 kcal Atomic # 7 Polarization: -143.90 SS G_CDS: -8.29 Total: -152.18 kcal Atomic # 8 Polarization: -87.91 SS G_CDS: -4.33 Total: -92.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: 113.87 SS G_CDS: -0.38 Total: 113.50 kcal Total: -68.96 -3.81 -72.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.341 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds