Wall clock time and date at job start Fri Apr 10 2020 17:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46820 * 2 1 4 4 C 1.50700 * 109.46834 * 240.00361 * 2 1 3 5 5 H 1.08005 * 120.00100 * 239.99692 * 4 2 1 6 6 C 1.37882 * 119.99930 * 60.00081 * 4 2 1 7 7 N 1.31508 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99782 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46726 * 90.00000 * 8 6 4 10 10 H 1.48497 * 109.46806 * 209.99754 * 8 6 4 11 11 H 1.48495 * 109.47374 * 330.00274 * 8 6 4 12 12 N 1.46499 * 109.47266 * 120.00302 * 2 1 3 13 13 C 1.46501 * 119.99634 * 60.00359 * 12 2 1 14 14 S 1.65591 * 120.00024 * 239.99532 * 12 2 1 15 15 O 1.42102 * 106.40164 * 156.46130 * 14 12 2 16 16 O 1.42104 * 106.40175 * 23.54774 * 14 12 2 17 17 N 1.65595 * 107.22226 * 270.00071 * 14 12 2 18 18 C 1.47066 * 136.05400 * 90.00220 * 17 14 12 19 19 C 1.53503 * 87.98596 * 207.08469 * 18 17 14 20 20 C 1.52995 * 114.20769 * 220.34643 * 19 18 17 21 21 N 1.46902 * 109.46745 * 184.99883 * 20 19 18 22 22 C 1.46900 * 111.00300 * 66.04918 * 21 20 19 23 23 C 1.46908 * 110.99799 * 189.99813 * 21 20 19 24 24 C 1.47060 * 136.06020 * 269.95257 * 17 14 12 25 25 H 1.08994 * 109.46629 * 299.99653 * 1 2 3 26 26 H 1.08994 * 109.47088 * 59.99275 * 1 2 3 27 27 H 1.08996 * 109.46820 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00367 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46694 * 269.99468 * 13 12 2 30 30 H 1.08994 * 109.47752 * 29.99446 * 13 12 2 31 31 H 1.08996 * 109.47248 * 150.00141 * 13 12 2 32 32 H 1.09000 * 113.46827 * 321.86073 * 18 17 14 33 33 H 1.09003 * 113.47151 * 92.30863 * 18 17 14 34 34 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 35 35 H 1.08997 * 109.46885 * 304.99565 * 20 19 18 36 36 H 1.09001 * 109.47175 * 64.99884 * 20 19 18 37 37 H 1.08999 * 109.47138 * 59.99175 * 22 21 20 38 38 H 1.08991 * 109.47423 * 180.02562 * 22 21 20 39 39 H 1.09013 * 109.46646 * 299.99888 * 22 21 20 40 40 H 1.09000 * 109.47207 * 60.00082 * 23 21 20 41 41 H 1.08999 * 109.46863 * 180.02562 * 23 21 20 42 42 H 1.09001 * 109.47213 * 299.99944 * 23 21 20 43 43 H 1.09006 * 113.47077 * 267.69449 * 24 17 14 44 44 H 1.08996 * 113.47134 * 38.12927 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4871 -0.1399 -5.1121 11 1 3.6307 -1.7564 -3.7122 12 7 2.0184 -0.6907 1.1961 13 6 1.6646 -2.0933 1.4278 14 16 2.9706 0.1140 2.2861 15 8 2.8230 -0.5648 3.5257 16 8 2.6904 1.4971 2.1193 17 7 4.5439 -0.1044 1.8179 18 6 5.4958 0.5979 0.9441 19 6 6.1988 -0.7480 0.7190 20 6 7.7262 -0.6625 0.7000 21 7 8.2859 -1.9776 0.3605 22 6 7.9401 -2.3577 -1.0157 23 6 9.7409 -1.9985 0.5625 24 6 5.6042 -1.0854 2.0933 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7081 1.1611 -3.4843 29 1 0.7377 -2.1445 1.9992 30 1 1.5296 -2.5969 0.4706 31 1 2.4630 -2.5820 1.9861 32 1 5.0385 1.0049 0.0423 33 1 6.1121 1.3267 1.4707 34 1 5.7875 -1.3351 -0.1022 35 1 8.0399 0.0691 -0.0446 36 1 8.0853 -0.3575 1.6829 37 1 8.3408 -1.6178 -1.7086 38 1 8.3664 -3.3352 -1.2408 39 1 6.8558 -2.4022 -1.1187 40 1 9.9659 -1.7820 1.6068 41 1 10.1295 -2.9834 0.3034 42 1 10.2069 -1.2457 -0.0733 43 1 6.2494 -0.8050 2.9260 44 1 5.2392 -2.1096 2.1688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601424016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:09 Heat of formation + Delta-G solvation = -26.482930 kcal Electronic energy + Delta-G solvation = -24939.813359 eV Core-core repulsion = 21441.875002 eV Total energy + Delta-G solvation = -3497.938358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.53330 -36.88594 -36.61539 -36.10777 -35.20207 -32.60072 -30.00678 -29.07160 -27.68929 -25.79054 -25.75823 -25.39373 -25.18400 -22.11639 -20.73304 -19.88689 -18.23989 -17.15108 -16.78056 -16.42085 -15.90290 -15.67257 -15.26692 -15.09547 -14.69385 -14.16144 -13.75828 -13.38461 -13.32796 -12.83920 -12.74107 -12.55710 -12.43935 -12.17415 -12.01052 -11.90459 -11.78203 -11.74896 -11.50471 -11.37144 -11.21819 -11.09893 -10.97212 -10.86743 -10.61143 -10.43552 -10.25365 -10.21449 -10.07293 -9.29404 -8.73512 -8.50018 -8.45217 -7.94284 -6.10673 -4.19083 1.19634 3.21896 3.29548 3.30350 3.49768 3.79487 4.14846 4.33268 4.54757 4.80549 4.87402 4.97100 5.13077 5.19566 5.25223 5.32501 5.41882 5.49940 5.61873 5.64650 5.67170 5.68680 5.69379 5.79453 5.92134 5.96439 6.19763 6.21623 6.35649 6.45822 6.68335 6.79121 6.89017 6.90197 6.91560 6.95010 7.12345 7.50489 7.62099 7.77765 8.04642 8.25531 8.84057 9.46907 10.94336 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.006486 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.042260 B = 4315.895151 C = 6113.047444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.987 5.987 13 C 0.109 3.891 14 S 2.803 3.197 15 O -0.995 6.995 16 O -0.978 6.978 17 N -1.049 6.049 18 C 0.135 3.865 19 C -0.121 4.121 20 C 0.064 3.936 21 N -0.545 5.545 22 C 0.019 3.981 23 C 0.025 3.975 24 C 0.142 3.858 25 H 0.012 0.988 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.023 0.977 43 H 0.076 0.924 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 -4.886 4.472 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.830 5.830 13 C -0.038 4.038 14 S 2.814 3.186 15 O -0.979 6.979 16 O -0.962 6.962 17 N -0.888 5.888 18 C 0.009 3.991 19 C -0.142 4.142 20 C -0.064 4.064 21 N -0.269 5.269 22 C -0.129 4.129 23 C -0.124 4.124 24 C 0.016 3.984 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.654 -4.567 5.502 14.535 hybrid contribution 0.683 -0.100 -1.808 1.935 sum 13.337 -4.667 3.694 14.605 Atomic orbital electron populations 1.22052 0.97965 0.99654 1.00734 1.18726 0.91856 0.92688 0.80298 0.92488 1.21368 1.31774 1.13019 0.90104 0.91925 1.24926 0.95020 0.94957 0.98939 1.69879 1.36249 1.22603 1.23767 0.86551 0.79195 0.79338 0.82587 1.20693 1.21247 1.19910 1.57780 1.63703 1.21458 1.40015 1.21161 0.98868 0.82041 1.01737 1.01166 0.71387 0.73222 0.72791 1.93529 1.85762 1.76553 1.42094 1.93569 1.83471 1.32373 1.86820 1.60569 1.25903 1.39671 1.62628 1.22367 0.88625 0.94395 0.93754 1.23195 0.93520 0.98305 0.99183 1.22116 0.94111 0.89256 1.00951 1.61976 1.11424 1.28832 1.24692 1.22475 1.02621 1.00106 0.87708 1.22371 0.87563 1.01080 1.01338 1.22352 0.86814 0.92897 0.96333 0.96923 0.88907 0.94876 0.92658 0.93933 0.90267 0.93305 0.89742 0.90621 0.87064 0.94131 0.90399 0.95612 0.91615 0.90485 0.91440 0.91533 0.95854 0.90577 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.23 7.99 -34.44 -0.28 -13.51 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.16 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.16 11.32 55.43 0.63 -23.54 16 8 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 12 N -0.99 -21.06 3.12 -115.85 -0.36 -21.42 16 13 C 0.11 2.00 9.28 59.85 0.56 2.55 16 14 S 2.80 58.02 6.64 -107.50 -0.71 57.31 16 15 O -1.00 -21.53 17.21 -57.17 -0.98 -22.52 16 16 O -0.98 -23.27 16.70 -57.17 -0.95 -24.23 16 17 N -1.05 -17.80 4.29 -125.18 -0.54 -18.34 16 18 C 0.14 1.96 8.31 -8.51 -0.07 1.89 16 19 C -0.12 -1.53 4.05 -90.10 -0.37 -1.89 16 20 C 0.06 0.66 4.87 -3.83 -0.02 0.64 16 21 N -0.55 -5.66 5.02 -251.25 -1.26 -6.92 16 22 C 0.02 0.20 9.37 60.06 0.56 0.76 16 23 C 0.02 0.21 9.57 60.07 0.57 0.78 16 24 C 0.14 1.92 8.30 -8.51 -0.07 1.84 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 31 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.11 1.55 6.27 -51.93 -0.33 1.23 16 35 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 36 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.08 0.88 6.29 -51.92 -0.33 0.55 16 40 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -31.13 362.49 -10.26 -41.39 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.47 Total: -0.07 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.95 Total: -2.12 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.53 Total: -70.21 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.94 Total: -46.74 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.71 Total: 57.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.13 -10.26 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601424016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.906 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds