Wall clock time and date at job start Fri Apr 10 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 N 1.46497 * 109.46979 * 184.95683 * 3 2 1 5 5 C 1.46505 * 120.00290 * 85.04014 * 4 3 2 6 6 S 1.65596 * 119.99907 * 265.03145 * 4 3 2 7 7 O 1.42098 * 106.40533 * 208.69290 * 6 4 3 8 8 O 1.42098 * 106.40657 * 341.61817 * 6 4 3 9 9 N 1.65604 * 107.21632 * 95.15804 * 6 4 3 10 10 C 1.47075 * 120.88458 * 84.22224 * 9 6 4 11 11 C 1.53693 * 108.27854 * 128.75626 * 10 9 6 12 12 N 1.46894 * 109.25811 * 54.08350 * 11 10 9 13 13 C 1.46900 * 111.00060 * 172.60768 * 12 11 10 14 14 C 1.50699 * 109.47230 * 294.29796 * 13 12 11 15 15 H 1.08003 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00151 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00156 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00254 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47308 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47422 * 120.00039 * 18 16 14 21 21 H 1.48497 * 109.47281 * 240.00138 * 18 16 14 22 22 C 1.46900 * 111.27041 * 296.75516 * 12 11 10 23 23 C 1.47086 * 120.88003 * 264.50405 * 9 6 4 24 24 H 1.08998 * 109.47120 * 59.99829 * 1 2 3 25 25 H 1.09004 * 109.47206 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46980 * 299.99752 * 1 2 3 27 27 H 1.09002 * 109.46980 * 240.00248 * 2 1 3 28 28 H 1.08998 * 109.47120 * 120.00171 * 2 1 3 29 29 H 1.08991 * 109.46956 * 64.95581 * 3 2 1 30 30 H 1.09002 * 109.46899 * 304.95339 * 3 2 1 31 31 H 1.08994 * 109.47490 * 89.99550 * 5 4 3 32 32 H 1.09002 * 109.46625 * 210.00068 * 5 4 3 33 33 H 1.08997 * 109.46750 * 329.99612 * 5 4 3 34 34 H 1.09001 * 109.63050 * 248.52827 * 10 9 6 35 35 H 1.09001 * 109.62663 * 9.10095 * 10 9 6 36 36 H 1.08995 * 109.64980 * 294.07598 * 11 10 9 37 37 H 1.08998 * 109.42170 * 173.94664 * 11 10 9 38 38 H 1.09001 * 109.47262 * 54.30262 * 13 12 11 39 39 H 1.09001 * 109.46887 * 174.30141 * 13 12 11 40 40 H 0.96993 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.49733 * 303.14861 * 22 12 11 42 42 H 1.09001 * 109.51816 * 183.07562 * 22 12 11 43 43 H 1.09002 * 109.62709 * 350.89070 * 23 9 6 44 44 H 1.08995 * 109.63102 * 111.47500 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 -0.1193 5 6 4.1272 1.3718 -1.4414 6 16 4.4419 1.5281 1.2402 7 8 5.6498 2.1684 0.8527 8 8 3.6036 2.0137 2.2797 9 7 4.8468 -0.0238 1.6525 10 6 5.9934 -0.6972 1.0242 11 6 6.8857 -1.2693 2.1371 12 7 6.0747 -2.1186 3.0197 13 6 6.9192 -2.8245 3.9926 14 6 7.8134 -3.7979 3.2688 15 1 7.7600 -3.8833 2.1935 16 6 8.7003 -4.5786 3.9792 17 7 8.7657 -4.4743 5.2886 18 14 9.8092 -5.7847 3.0819 19 1 9.5434 -5.7103 1.6228 20 1 11.2298 -5.4402 3.3439 21 1 9.5366 -7.1619 3.5656 22 6 5.0302 -1.3389 3.6972 23 6 4.0655 -0.7675 2.6525 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7510 1.9300 0.9310 30 1 1.6060 1.9813 -0.8423 31 1 4.2766 2.3797 -1.8284 32 1 5.0900 0.8674 -1.3597 33 1 3.4813 0.8142 -2.1197 34 1 5.6381 -1.5047 0.3840 35 1 6.5601 0.0211 0.4316 36 1 7.3191 -0.4533 2.7153 37 1 7.6834 -1.8642 1.6924 38 1 7.5307 -2.1027 4.5341 39 1 6.2874 -3.3660 4.6967 40 1 9.3894 -5.0238 5.7884 41 1 5.4893 -0.5219 4.2536 42 1 4.4821 -1.9839 4.3840 43 1 3.3570 -0.0958 3.1371 44 1 3.5284 -1.5817 2.1660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:22 Heat of formation + Delta-G solvation = -69.451564 kcal Electronic energy + Delta-G solvation = -24721.045005 eV Core-core repulsion = 21221.243387 eV Total energy + Delta-G solvation = -3499.801618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.32263 -37.42930 -37.10651 -35.82646 -34.39068 -33.11347 -32.31044 -30.72792 -27.81433 -27.69062 -25.16434 -24.82597 -23.33336 -21.82230 -21.75128 -20.13148 -18.84454 -17.71048 -17.46594 -16.51454 -16.29417 -15.27684 -14.93310 -14.91092 -14.52720 -14.43815 -14.18320 -14.16643 -13.70287 -13.50341 -13.26972 -13.01650 -12.53927 -12.50834 -12.32270 -12.21844 -11.99435 -11.86163 -11.78374 -11.61644 -11.51793 -11.25814 -11.04857 -10.89170 -10.79109 -10.73242 -10.58381 -10.38998 -9.87304 -9.30884 -9.27597 -8.82514 -8.46259 -7.28729 -6.05225 -4.06979 0.54148 2.79955 3.29373 3.36955 3.40906 3.44735 4.26731 4.39718 4.47827 4.71893 4.78093 4.81494 4.94469 5.04840 5.18052 5.25130 5.30419 5.38969 5.43486 5.49194 5.53335 5.54621 5.63570 5.66927 5.76144 5.79296 5.80208 5.94704 5.97248 6.04894 6.19796 6.33894 6.35229 6.49491 6.56162 6.80008 7.25100 7.31976 7.76252 8.04045 8.15166 8.50181 9.00619 9.57522 11.05694 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.022544 B = 0.003674 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.739729 B = 7618.722418 C = 7784.907750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.115 3.885 4 N -1.013 6.013 5 C 0.096 3.904 6 S 2.782 3.218 7 O -0.976 6.976 8 O -0.978 6.978 9 N -1.003 6.003 10 C 0.124 3.876 11 C 0.054 3.946 12 N -0.533 5.533 13 C 0.192 3.808 14 C -0.508 4.508 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.044 3.956 23 C 0.126 3.874 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.096 0.904 38 H -0.008 1.008 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 10.644 -12.831 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C -0.010 4.010 4 N -0.852 5.852 5 C -0.050 4.050 6 S 2.791 3.209 7 O -0.960 6.960 8 O -0.962 6.962 9 N -0.844 5.844 10 C -0.002 4.002 11 C -0.076 4.076 12 N -0.259 5.259 13 C 0.067 3.933 14 C -0.546 4.546 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.087 4.087 23 C 0.001 3.999 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.114 0.886 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.542 11.049 -12.541 22.154 hybrid contribution 0.969 -0.554 -0.049 1.117 sum -13.574 10.495 -12.590 21.281 Atomic orbital electron populations 1.21697 0.95044 1.02118 1.01909 1.22014 0.96381 0.97194 1.03093 1.21452 0.78541 0.97206 1.03810 1.57979 1.16115 1.89676 1.21385 1.21423 0.97790 1.01915 0.83834 1.02016 0.72929 0.73239 0.72696 1.93598 1.45621 1.73238 1.83513 1.93560 1.68861 1.78874 1.54944 1.58058 1.40170 1.33719 1.52484 1.21761 0.85926 0.96673 0.95794 1.22338 0.95426 0.95459 0.94375 1.62020 1.14812 1.26431 1.22601 1.19744 0.90985 0.92575 0.89986 1.21178 1.18906 1.20542 0.94009 0.91748 1.24998 0.97394 0.97395 0.94848 1.69969 1.37369 1.40567 1.05828 0.86440 0.80219 0.80840 0.79882 1.19659 1.21141 1.21046 1.22336 0.94823 0.96476 0.95047 1.21594 0.93423 0.95757 0.89158 0.92715 0.92310 0.92384 0.91389 0.91409 0.89078 0.90328 0.92507 0.91241 0.91049 0.90876 0.89943 0.95540 0.88599 0.99062 0.95025 0.92947 0.95470 0.90117 0.89459 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.15 -1.19 6.26 -26.73 -0.17 -1.36 16 3 C 0.12 1.01 5.64 -4.04 -0.02 0.98 16 4 N -1.01 -10.58 3.24 -121.76 -0.39 -10.97 16 5 C 0.10 0.80 10.31 59.85 0.62 1.42 16 6 S 2.78 39.49 6.08 -107.50 -0.65 38.84 16 7 O -0.98 -16.45 16.17 -57.17 -0.92 -17.38 16 8 O -0.98 -15.78 15.09 -57.17 -0.86 -16.64 16 9 N -1.00 -14.44 3.38 -112.97 -0.38 -14.82 16 10 C 0.12 1.84 6.68 -3.37 -0.02 1.82 16 11 C 0.05 1.03 5.47 -3.47 -0.02 1.01 16 12 N -0.53 -11.13 4.62 -235.47 -1.09 -12.22 16 13 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 14 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 15 H 0.06 1.73 7.13 -52.48 -0.37 1.35 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 23 C 0.13 1.81 6.31 -3.59 -0.02 1.78 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.62 7.54 -51.93 -0.39 0.23 16 29 H 0.09 0.87 6.88 -51.93 -0.36 0.52 16 30 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.59 7.92 -51.93 -0.41 0.17 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.11 7.08 -51.93 -0.37 0.75 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 38 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 43 H 0.09 1.15 6.82 -51.93 -0.35 0.79 16 44 H 0.07 0.95 7.92 -51.93 -0.41 0.53 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -32.89 359.18 -10.50 -43.39 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.62 Total: -4.09 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.30 Total: -2.07 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.13 Total: -63.71 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.79 Total: -34.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 39.49 SS G_CDS: -0.65 Total: 38.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.89 -10.50 -43.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.060 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds