Wall clock time and date at job start Fri Apr 10 2020 17:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34966 * 125.52396 * 2 1 4 4 C 1.41205 * 108.24172 * 179.97438 * 3 2 1 5 5 N 1.32932 * 126.37536 * 179.97438 * 4 3 2 6 6 C 1.33834 * 120.00087 * 0.03567 * 5 4 3 7 7 O 1.21839 * 119.99798 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00128 * 179.97438 * 6 5 4 9 9 C 1.47869 * 126.92542 * 0.02562 * 8 6 5 10 10 C 1.56021 * 105.11013 * 181.88955 * 9 8 6 11 11 H 1.09002 * 116.25432 * 158.85969 * 10 9 8 12 12 C 1.57081 * 99.60036 * 32.80905 * 10 9 8 13 13 C 1.49510 * 126.88560 * 179.97438 * 8 6 5 14 14 H 1.09004 * 116.26318 * 16.93269 * 13 8 6 15 15 C 1.56010 * 104.05787 * 246.91957 * 13 8 6 16 16 N 1.48452 * 105.07059 * 288.87059 * 15 13 8 17 17 N 1.37415 * 107.24544 * 0.26406 * 4 3 2 18 18 H 0.96999 * 126.36958 * 179.71278 * 17 4 3 19 19 N 1.36449 * 125.53105 * 179.97438 * 2 1 3 20 20 C 1.46502 * 125.84993 * 0.02562 * 19 2 1 21 21 C 1.50697 * 109.47188 * 84.99794 * 20 19 2 22 22 H 1.08005 * 119.99920 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00196 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00226 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99821 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.46910 * 90.00323 * 25 23 21 27 27 H 1.48500 * 109.47309 * 209.99666 * 25 23 21 28 28 H 1.48489 * 109.47329 * 330.00072 * 25 23 21 29 29 H 1.09001 * 109.47082 * 90.02473 * 1 2 3 30 30 H 1.08993 * 109.46708 * 210.02153 * 1 2 3 31 31 H 1.08996 * 109.47446 * 330.02466 * 1 2 3 32 32 H 1.07998 * 125.87087 * 359.94278 * 3 2 1 33 33 H 1.09002 * 110.30875 * 62.98160 * 9 8 6 34 34 H 1.08994 * 110.31756 * 300.80162 * 9 8 6 35 35 H 1.09002 * 112.35846 * 64.33384 * 12 10 9 36 36 H 1.09003 * 112.35818 * 191.65936 * 12 10 9 37 37 H 1.09004 * 110.31858 * 47.82547 * 15 13 8 38 38 H 1.08996 * 110.32704 * 169.92218 * 15 13 8 39 39 H 1.00897 * 110.95374 * 241.34445 * 16 15 13 40 40 H 1.09001 * 109.47577 * 205.00273 * 20 19 2 41 41 H 1.09008 * 109.47162 * 325.00196 * 20 19 2 42 42 H 0.97000 * 120.00053 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6395 0.6790 0.0006 5 7 4.7103 1.4667 0.0003 6 6 4.5624 2.7969 0.0001 7 8 3.4464 3.2858 -0.0003 8 7 5.6480 3.5956 0.0003 9 6 7.0641 3.1699 0.0003 10 6 7.8870 4.4945 0.0503 11 1 8.9126 4.4117 0.4102 12 6 6.9113 5.3768 0.9087 13 6 5.6622 5.0906 -0.0004 14 1 4.7315 5.5819 0.2835 15 6 6.2598 5.4632 -1.3925 16 7 7.6951 5.0937 -1.3078 17 7 3.6386 -0.6952 -0.0051 18 1 4.4193 -1.2709 -0.0100 19 7 2.3000 -1.1104 0.0005 20 6 1.8322 -2.4988 0.0006 21 6 1.5550 -2.9355 -1.4148 22 1 1.7119 -2.2478 -2.2327 23 6 1.1019 -4.2133 -1.6658 24 7 0.8605 -4.5947 -2.9011 25 14 0.8312 -5.4029 -0.2512 26 1 -0.5626 -5.2733 0.2447 27 1 1.0618 -6.7924 -0.7218 28 1 1.7789 -5.0889 0.8479 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3632 -0.8898 0.5141 31 1 -0.3634 0.8901 0.5134 32 1 1.9467 2.1220 -0.0009 33 1 7.2928 2.6164 -0.9105 34 1 7.2758 2.5595 0.8781 35 1 6.7853 4.9913 1.9204 36 1 7.1934 6.4297 0.9060 37 1 5.7672 4.8937 -2.1806 38 1 6.1537 6.5323 -1.5762 39 1 8.2842 5.9034 -1.4323 40 1 2.5986 -3.1404 0.4353 41 1 0.9182 -2.5742 0.5897 42 1 0.5421 -5.4938 -3.0777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601559854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:25 Heat of formation + Delta-G solvation = 90.814853 kcal Electronic energy + Delta-G solvation = -24827.413588 eV Core-core repulsion = 21231.410444 eV Total energy + Delta-G solvation = -3596.003144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.42192 -41.58012 -39.47545 -36.00952 -34.78004 -34.27000 -33.72979 -32.56331 -30.62665 -30.05860 -28.85317 -28.66782 -26.16396 -24.53956 -23.47088 -21.82174 -21.54888 -21.05758 -19.90733 -19.28742 -18.74663 -18.03627 -17.36280 -17.08084 -16.72609 -16.27151 -16.11117 -15.86098 -15.51858 -14.90807 -14.68825 -14.37902 -14.31052 -13.92211 -13.83350 -13.74514 -13.46992 -13.24010 -13.20570 -12.98119 -12.75386 -12.58673 -12.43493 -12.34049 -12.25130 -12.09136 -11.85432 -11.20363 -11.16485 -10.91780 -10.35085 -9.95525 -9.59791 -9.41699 -8.43184 -8.34007 -6.56521 0.20850 0.52312 1.37824 1.39457 1.48017 1.57683 2.04562 2.25093 2.83046 2.94237 3.01611 3.11226 3.53400 3.60584 3.65351 3.87595 4.03782 4.12734 4.23831 4.32248 4.41553 4.43949 4.56210 4.66139 4.75799 4.77592 4.78942 4.88638 4.90775 4.95395 4.99374 5.04600 5.06863 5.14452 5.28179 5.57867 5.63228 5.81405 6.00249 6.10314 6.38975 6.51744 6.53772 6.80614 7.04685 7.09516 8.05687 8.73738 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.002908 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.806610 B = 9624.718037 C = 9931.376866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.199 3.801 3 C -0.349 4.349 4 C 0.474 3.526 5 N -0.717 5.717 6 C 0.688 3.312 7 O -0.662 6.662 8 N -0.621 5.621 9 C 0.127 3.873 10 C 0.067 3.933 11 H 0.164 0.836 12 C -0.154 4.154 13 C 0.110 3.890 14 H 0.111 0.889 15 C 0.039 3.961 16 N -0.677 5.677 17 N -0.467 5.467 18 H 0.452 0.548 19 N -0.350 5.350 20 C 0.234 3.766 21 C -0.562 4.562 22 H 0.030 0.970 23 C 0.025 3.975 24 N -0.935 5.935 25 Si 0.948 3.052 26 H -0.253 1.253 27 H -0.287 1.287 28 H -0.235 1.235 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.171 0.829 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.353 0.647 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 14.429 11.042 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 C -0.381 4.381 4 C 0.221 3.779 5 N -0.481 5.481 6 C 0.389 3.611 7 O -0.548 6.548 8 N -0.357 5.357 9 C 0.003 3.997 10 C -0.042 4.042 11 H 0.181 0.819 12 C -0.194 4.194 13 C 0.006 3.994 14 H 0.129 0.871 15 C -0.092 4.092 16 N -0.307 5.307 17 N -0.191 5.191 18 H 0.301 0.699 19 N -0.137 5.137 20 C 0.116 3.884 21 C -0.600 4.600 22 H 0.048 0.952 23 C -0.175 4.175 24 N -0.573 5.573 25 Si 0.769 3.231 26 H -0.177 1.177 27 H -0.212 1.212 28 H -0.158 1.158 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.188 0.812 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.236 13.234 10.512 19.260 hybrid contribution -0.545 -0.218 0.065 0.591 sum 8.691 13.016 10.577 18.889 Atomic orbital electron populations 1.20801 0.83493 1.05887 1.04925 1.21830 0.96000 0.84456 0.90273 1.22088 0.91425 1.00241 1.24380 1.18905 0.91507 0.82634 0.84892 1.68127 1.28752 1.04105 1.47110 1.16506 0.82403 0.84878 0.77312 1.90685 1.25016 1.79012 1.60065 1.48014 1.05135 1.06037 1.76491 1.22309 0.79642 0.97059 1.00659 1.24621 0.99743 0.92191 0.87645 0.81898 1.24496 0.94156 1.01927 0.98809 1.24181 0.99551 0.79177 0.96524 0.87074 1.23389 0.89313 1.00517 0.95935 1.63097 1.04620 1.33766 1.29230 1.44283 0.98832 1.04525 1.71498 0.69865 1.47329 0.93146 1.07445 1.65763 1.20219 0.97675 0.73076 0.97398 1.21340 1.47639 0.99154 0.91895 0.95164 1.25810 0.93432 0.99571 0.98727 1.70036 1.44881 1.20309 1.22040 0.85734 0.80798 0.77576 0.79023 1.17689 1.21245 1.15806 0.89147 0.88765 0.86675 0.81211 0.93242 0.91835 0.90161 0.86838 0.93704 0.89083 0.82925 0.91620 0.89226 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 10.09 71.24 0.72 -1.79 16 2 C 0.20 7.17 6.92 41.09 0.28 7.45 16 3 C -0.35 -14.25 9.41 22.25 0.21 -14.04 16 4 C 0.47 19.98 8.07 133.95 1.08 21.06 16 5 N -0.72 -31.08 10.13 -322.56 -3.27 -34.35 16 6 C 0.69 29.92 8.45 179.35 1.52 31.44 16 7 O -0.66 -31.64 13.61 -4.79 -0.07 -31.71 16 8 N -0.62 -21.21 2.95 -786.06 -2.32 -23.53 16 9 C 0.13 3.48 6.33 87.16 0.55 4.03 16 10 C 0.07 1.14 5.79 46.85 0.27 1.41 16 11 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.15 -2.55 6.80 33.48 0.23 -2.33 16 13 C 0.11 2.82 5.25 46.90 0.25 3.07 16 14 H 0.11 3.04 8.06 -2.39 -0.02 3.02 16 15 C 0.04 0.87 6.97 87.05 0.61 1.48 16 16 N -0.68 -12.60 7.17 -463.67 -3.33 -15.93 16 17 N -0.47 -17.56 7.38 -54.79 -0.40 -17.97 16 18 H 0.45 14.81 8.96 -213.28 -1.91 12.89 16 19 N -0.35 -13.19 3.63 -337.52 -1.23 -14.41 16 20 C 0.23 8.87 5.00 85.63 0.43 9.30 16 21 C -0.56 -27.84 9.94 25.60 0.25 -27.59 16 22 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 23 C 0.03 1.27 5.47 84.65 0.46 1.74 16 24 N -0.93 -52.84 13.96 21.45 0.30 -52.54 16 25 Si 0.95 35.75 27.47 68.60 1.88 37.63 16 26 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 27 H -0.29 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.24 -7.69 6.54 99.48 0.65 -7.04 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.09 2.23 7.14 -2.39 -0.02 2.21 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.17 7.41 5.77 -2.91 -0.02 7.40 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.35 4.28 8.93 -89.70 -0.80 3.48 16 40 H 0.07 2.30 7.20 -2.39 -0.02 2.28 16 41 H 0.09 2.91 6.61 -2.38 -0.02 2.90 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -75.38 343.85 -3.27 -78.65 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -1.70 Total: 38.92 kcal Atomic # 6 Polarization: 28.37 SS G_CDS: 6.86 Total: 35.23 kcal Atomic # 7 Polarization: -148.48 SS G_CDS: -10.24 Total: -158.72 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.07 Total: -31.71 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 1.88 Total: 37.63 kcal Total: -75.38 -3.27 -78.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601559854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.467 kcal (2) G-P(sol) polarization free energy of solvation -75.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds