Wall clock time and date at job start Fri Apr 10 2020 17:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48499 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47055 * 300.00055 * 3 2 1 6 6 H 1.48506 * 109.46651 * 60.00297 * 3 2 1 7 7 C 1.37882 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99742 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46539 * 180.02562 * 9 7 2 11 11 C 1.36446 * 125.85426 * 85.02779 * 10 9 7 12 12 C 1.34959 * 108.94832 * 179.97438 * 11 10 9 13 13 C 1.41209 * 108.24268 * 0.02562 * 12 11 10 14 14 N 1.32934 * 126.37429 * 180.02562 * 13 12 11 15 15 C 1.33828 * 120.00343 * 0.02562 * 14 13 12 16 16 O 1.21843 * 120.00043 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00132 * 180.02562 * 15 14 13 18 18 C 1.47154 * 120.68256 * 359.71256 * 17 15 14 19 19 C 1.54323 * 107.81292 * 132.56535 * 18 17 15 20 20 H 1.09000 * 112.56182 * 182.48702 * 19 18 17 21 21 C 1.54547 * 107.96618 * 306.88381 * 19 18 17 22 22 C 1.54261 * 104.93626 * 88.91319 * 21 19 18 23 23 C 1.54538 * 104.94230 * 0.02562 * 22 21 19 24 24 H 1.08997 * 112.71239 * 146.75109 * 23 22 21 25 25 C 1.47150 * 120.68473 * 180.02562 * 17 15 14 26 26 N 1.48724 * 107.06893 * 58.69806 * 19 18 17 27 27 N 1.37420 * 107.24087 * 0.25721 * 13 12 11 28 28 H 0.96996 * 126.36150 * 179.69839 * 27 13 12 29 29 H 0.96994 * 119.99820 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47195 * 59.99930 * 9 7 2 31 31 H 1.09002 * 109.46758 * 299.99534 * 9 7 2 32 32 H 1.08002 * 125.52559 * 359.97438 * 11 10 9 33 33 H 1.08006 * 125.87752 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.75312 * 252.27654 * 18 17 15 35 35 H 1.09005 * 109.74360 * 13.00123 * 18 17 15 36 36 H 1.08998 * 110.35009 * 207.77578 * 21 19 18 37 37 H 1.08998 * 110.34851 * 329.94171 * 21 19 18 38 38 H 1.08999 * 110.34209 * 241.13631 * 22 21 19 39 39 H 1.09000 * 110.34490 * 118.87260 * 22 21 19 40 40 H 1.09003 * 109.74492 * 346.99612 * 25 17 15 41 41 H 1.08998 * 109.75215 * 107.67807 * 25 17 15 42 42 H 1.00901 * 111.00085 * 167.34697 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.7954 -4.1578 1.1012 12 6 3.6083 -5.1617 0.7103 13 6 3.5369 -5.2661 -0.6961 14 7 4.1933 -6.1369 -1.4564 15 6 5.0177 -7.0283 -0.8936 16 8 5.1670 -7.0416 0.3155 17 7 5.6836 -7.9108 -1.6645 18 6 5.5106 -7.9117 -3.1258 19 6 6.9132 -7.9663 -3.7672 20 1 6.8770 -7.9267 -4.8559 21 6 7.7562 -6.8177 -3.1686 22 6 8.4135 -7.4210 -1.9102 23 6 7.9106 -8.8814 -1.8591 24 1 8.6499 -9.5669 -1.4450 25 6 6.5933 -8.8979 -1.0616 26 7 7.5722 -9.2037 -3.2708 27 7 2.6665 -4.2965 -1.1329 28 1 2.4176 -4.1196 -2.0535 29 1 -0.4849 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8902 31 1 0.6248 -2.5571 0.8898 32 1 2.6390 -3.8378 2.1208 33 1 4.2105 -5.7784 1.3610 34 1 4.9300 -8.7834 -3.4276 35 1 4.9977 -7.0013 -3.4364 36 1 8.5192 -6.4978 -3.8782 37 1 7.1155 -5.9784 -2.8981 38 1 8.0954 -6.8789 -1.0196 39 1 9.4994 -7.3974 -2.0015 40 1 6.7884 -8.6324 -0.0225 41 1 6.1448 -9.8901 -1.1101 42 1 8.4040 -9.4091 -3.8038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601563725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:29 Heat of formation + Delta-G solvation = 92.781963 kcal Electronic energy + Delta-G solvation = -25059.032737 eV Core-core repulsion = 21463.114893 eV Total energy + Delta-G solvation = -3595.917844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81127 -40.35952 -38.09565 -34.36384 -33.62774 -32.98764 -31.47935 -30.97467 -30.45474 -29.98912 -26.96901 -25.75289 -24.57355 -23.15918 -21.70009 -21.20978 -20.42587 -19.95297 -18.66557 -17.43390 -16.96278 -16.57516 -15.82188 -15.70683 -15.24469 -14.85898 -14.63859 -14.24502 -14.14677 -13.85469 -13.64249 -13.62303 -13.09412 -12.70342 -12.61805 -12.51098 -12.23127 -11.95604 -11.59648 -11.33272 -11.21885 -11.08646 -10.90921 -10.86288 -10.53812 -10.41140 -10.37229 -9.65150 -9.54782 -9.01845 -8.98721 -8.92444 -8.27214 -8.09034 -6.85665 -6.47541 -4.65265 1.81586 2.11169 3.04182 3.13613 3.16997 3.20162 3.49020 4.03695 4.06319 4.43836 4.62122 4.70295 4.78254 4.81661 4.89701 5.05357 5.22221 5.29458 5.43913 5.52286 5.58160 5.62647 5.74999 5.89839 5.91699 5.96622 6.03430 6.05859 6.16550 6.24575 6.30669 6.54977 6.57673 6.62146 6.77602 7.15563 7.18879 7.34504 7.40415 7.52123 7.66229 7.86835 8.27292 8.44698 8.51548 9.05391 9.63584 10.52754 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.002978 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.843241 B = 9399.681393 C = 9794.870963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.255 3.745 10 N -0.346 5.346 11 C 0.161 3.839 12 C -0.334 4.334 13 C 0.486 3.514 14 N -0.710 5.710 15 C 0.689 3.311 16 O -0.633 6.633 17 N -0.606 5.606 18 C 0.140 3.860 19 C 0.048 3.952 20 H 0.097 0.903 21 C -0.144 4.144 22 C -0.144 4.144 23 C 0.050 3.950 24 H 0.098 0.902 25 C 0.142 3.858 26 N -0.658 5.658 27 N -0.472 5.472 28 H 0.444 0.556 29 H 0.271 0.729 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 -12.154 -4.690 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.132 5.132 11 C 0.016 3.984 12 C -0.367 4.367 13 C 0.233 3.767 14 N -0.475 5.475 15 C 0.390 3.610 16 O -0.516 6.516 17 N -0.342 5.342 18 C 0.016 3.984 19 C -0.062 4.062 20 H 0.115 0.885 21 C -0.183 4.183 22 C -0.183 4.183 23 C -0.061 4.061 24 H 0.116 0.884 25 C 0.017 3.983 26 N -0.284 5.284 27 N -0.195 5.195 28 H 0.290 0.710 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.203 0.797 33 H 0.199 0.801 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.243 -12.281 -4.892 16.130 hybrid contribution 1.158 1.784 -0.002 2.127 sum 10.401 -10.497 -4.893 15.566 Atomic orbital electron populations 1.69907 1.06133 1.28162 1.48164 1.24960 0.95004 0.99736 0.93851 0.86252 0.80053 0.82097 0.78070 1.19410 1.20531 1.20397 1.21469 0.94109 0.89583 1.54355 0.91195 1.20029 0.85621 0.79851 1.00630 1.47959 1.39757 1.29273 0.96255 1.22791 0.91366 0.92143 0.92089 1.22386 1.11922 1.07142 0.95209 1.18732 0.83948 0.84430 0.89624 1.68025 1.25888 1.16788 1.36770 1.16523 0.80241 0.80784 0.83467 1.90715 1.70255 1.75592 1.15041 1.46745 1.46431 1.34779 1.06265 1.21705 0.94116 1.02752 0.79866 1.23429 0.95858 0.88028 0.98934 0.88465 1.22831 0.99140 0.99687 0.96678 1.22830 0.99276 0.96881 0.99361 1.23326 0.97005 0.95084 0.90647 0.88353 1.21532 0.87924 0.91601 0.97197 1.63727 1.28255 1.33660 1.02805 1.44420 1.42195 1.29443 1.03408 0.70956 0.91913 0.93126 0.91454 0.79727 0.80077 0.92420 0.88241 0.92363 0.90549 0.90792 0.92301 0.89270 0.92065 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.53 13.29 55.43 0.74 -21.80 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.56 -13.25 9.39 -34.44 -0.32 -13.57 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.26 5.32 6.19 -5.19 -0.03 5.29 16 10 N -0.35 -6.45 3.63 -62.24 -0.23 -6.67 16 11 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 12 C -0.33 -6.30 9.52 -39.62 -0.38 -6.68 16 13 C 0.49 9.44 8.07 -155.29 -1.25 8.19 16 14 N -0.71 -13.89 9.10 -15.79 -0.14 -14.04 16 15 C 0.69 13.63 8.22 -87.77 -0.72 12.91 16 16 O -0.63 -13.88 12.72 5.06 0.06 -13.82 16 17 N -0.61 -9.77 2.23 -177.16 -0.40 -10.17 16 18 C 0.14 1.92 5.94 -2.99 -0.02 1.90 16 19 C 0.05 0.53 4.54 -65.20 -0.30 0.24 16 20 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.14 -1.70 6.18 -25.26 -0.16 -1.86 16 22 C -0.14 -1.70 6.17 -25.26 -0.16 -1.85 16 23 C 0.05 0.55 4.54 -65.38 -0.30 0.26 16 24 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 25 C 0.14 1.97 5.90 -3.17 -0.02 1.95 16 26 N -0.66 -6.81 7.08 -94.26 -0.67 -7.48 16 27 N -0.47 -8.42 7.38 31.33 0.23 -8.18 16 28 H 0.44 6.96 8.96 -182.56 -1.64 5.33 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.19 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.18 3.63 5.77 -52.48 -0.30 3.33 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.46 6.95 -51.93 -0.36 1.10 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 38 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 1.35 7.10 -51.93 -0.37 0.98 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.33 2.77 8.92 -39.29 -0.35 2.42 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -28.97 340.58 -11.41 -40.38 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -7.18 Total: 11.48 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -3.94 Total: 10.92 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -0.47 Total: -68.34 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.06 Total: -13.82 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.97 -11.41 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601563725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.159 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds