Wall clock time and date at job start Fri Apr 10 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99491 * 2 1 4 4 H 1.48508 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47398 * 299.99980 * 3 2 1 6 6 H 1.48505 * 109.47400 * 60.00304 * 3 2 1 7 7 C 1.37875 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99720 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99851 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99930 * 170.00127 * 10 9 7 12 12 C 1.53240 * 109.33923 * 187.25293 * 11 10 9 13 13 N 1.47078 * 108.52148 * 306.16958 * 12 11 10 14 14 C 1.34780 * 120.87974 * 231.18813 * 13 12 11 15 15 O 1.21594 * 119.99882 * 183.69785 * 14 13 12 16 16 C 1.47524 * 120.00147 * 3.68922 * 14 13 12 17 17 C 1.36595 * 125.77162 * 173.23812 * 16 14 13 18 18 N 1.34813 * 106.83898 * 180.14244 * 17 16 14 19 19 C 1.46499 * 126.59200 * 179.91223 * 18 17 16 20 20 C 1.53000 * 117.50058 * 84.71171 * 19 18 17 21 21 C 1.53004 * 60.03323 * 252.49693 * 20 19 18 22 22 N 1.40210 * 106.81132 * 359.64871 * 18 17 16 23 23 N 1.28761 * 108.36734 * 0.22592 * 22 18 17 24 24 C 1.47075 * 118.23950 * 51.45864 * 13 12 11 25 25 C 1.46904 * 111.00070 * 294.29989 * 10 9 7 26 26 H 0.97001 * 120.00191 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47249 * 59.99820 * 9 7 2 28 28 H 1.09001 * 109.47316 * 299.99566 * 9 7 2 29 29 H 1.08995 * 109.49356 * 67.29504 * 11 10 9 30 30 H 1.08999 * 109.51625 * 307.22234 * 11 10 9 31 31 H 1.09001 * 109.62882 * 186.45405 * 12 11 10 32 32 H 1.09001 * 109.62924 * 65.88035 * 12 11 10 33 33 H 1.08006 * 126.58097 * 0.02562 * 17 16 14 34 34 H 1.09001 * 115.55884 * 230.39764 * 19 18 17 35 35 H 1.09000 * 117.49671 * 359.97438 * 20 19 18 36 36 H 1.09002 * 117.49720 * 144.99445 * 20 19 18 37 37 H 1.08995 * 117.49696 * 107.50059 * 21 20 19 38 38 H 1.08994 * 117.49920 * 252.52420 * 21 20 19 39 39 H 1.09005 * 109.62979 * 68.25016 * 24 13 12 40 40 H 1.08999 * 109.63098 * 188.83645 * 24 13 12 41 41 H 1.08997 * 109.49465 * 292.70784 * 25 10 9 42 42 H 1.09005 * 109.49015 * 52.78753 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2386 12 6 2.5640 -6.0031 0.4114 13 7 3.4618 -5.9861 -0.7534 14 6 3.7121 -7.1122 -1.4503 15 8 4.5086 -7.0943 -2.3689 16 6 3.0199 -8.3666 -1.0986 17 6 3.0832 -9.5372 -1.7997 18 7 2.3095 -10.4265 -1.1455 19 6 2.0682 -11.8204 -1.5262 20 6 3.0915 -12.8638 -1.0735 21 6 3.0213 -12.4505 -2.5450 22 7 1.7853 -9.7627 -0.0273 23 7 2.2243 -8.5522 -0.0314 24 6 4.0839 -4.7089 -1.1339 25 6 2.9768 -3.6490 -1.2494 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 0.8798 -5.1263 -0.6112 30 1 0.9159 -4.8194 1.1420 31 1 2.0634 -6.9693 0.4740 32 1 3.1396 -5.8264 1.3200 33 1 3.6438 -9.7154 -2.7055 34 1 1.0218 -12.1239 -1.5614 35 1 3.9446 -12.5131 -0.4927 36 1 2.7184 -13.8536 -0.8104 37 1 3.8280 -11.8279 -2.9319 38 1 2.6017 -13.1681 -3.2499 39 1 4.8029 -4.4101 -0.3710 40 1 4.5887 -4.8190 -2.0937 41 1 2.3150 -3.8992 -2.0785 42 1 3.4273 -2.6720 -1.4251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602197923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:54:32 Heat of formation + Delta-G solvation = 98.085814 kcal Electronic energy + Delta-G solvation = -24712.745162 eV Core-core repulsion = 21117.057310 eV Total energy + Delta-G solvation = -3595.687852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.42384 -40.97807 -38.95637 -38.52324 -36.04497 -34.44784 -33.66574 -32.56170 -31.63854 -30.00672 -27.38353 -26.01832 -24.97748 -24.32807 -23.72729 -23.25963 -22.13470 -21.95420 -20.38888 -18.83250 -18.45445 -17.70480 -17.38034 -17.07444 -16.65871 -16.36032 -16.19344 -15.94458 -15.47878 -15.38297 -15.34893 -15.02739 -14.32258 -14.12692 -14.05823 -13.71741 -13.42254 -13.20567 -12.80781 -12.71107 -12.59930 -12.57243 -12.52837 -12.34371 -12.19778 -11.90651 -11.73248 -11.49516 -11.36651 -11.09172 -10.86526 -10.61918 -10.41779 -9.78422 -9.06745 -8.20466 -6.30720 0.04186 0.48564 0.91554 1.42396 1.43006 1.56879 1.84159 2.11566 2.40903 2.45929 2.95962 3.11950 3.26908 3.39848 3.40801 3.66404 3.83324 3.87371 3.95348 4.04615 4.20671 4.23231 4.24986 4.38130 4.43765 4.62112 4.66284 4.72509 4.84176 4.92275 4.92711 5.00094 5.07018 5.11841 5.20085 5.23527 5.42210 5.53273 5.64541 6.02456 6.18063 6.33667 6.56621 6.74408 6.85075 7.00762 7.39065 8.91158 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.037987 B = 0.002715 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.920248 B =10311.837281 C =10749.967359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.044 3.956 12 C 0.091 3.909 13 N -0.596 5.596 14 C 0.601 3.399 15 O -0.568 6.568 16 C -0.118 4.118 17 C 0.111 3.889 18 N -0.319 5.319 19 C 0.032 3.968 20 C -0.162 4.162 21 C -0.145 4.145 22 N -0.080 5.080 23 N -0.224 5.224 24 C 0.126 3.874 25 C 0.056 3.944 26 H 0.264 0.736 27 H -0.042 1.042 28 H 0.008 0.992 29 H 0.013 0.987 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.011 0.989 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 -28.794 -5.224 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.085 4.085 12 C -0.032 4.032 13 N -0.327 5.327 14 C 0.389 3.611 15 O -0.448 6.448 16 C -0.257 4.257 17 C -0.047 4.047 18 N -0.103 5.103 19 C -0.068 4.068 20 C -0.200 4.200 21 C -0.183 4.183 22 N -0.059 5.059 23 N -0.096 5.096 24 C 0.004 3.996 25 C -0.073 4.073 26 H 0.073 0.927 27 H -0.024 1.024 28 H 0.026 0.974 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.184 0.816 35 H 0.111 0.889 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.030 0.970 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.584 -28.778 -4.067 29.801 hybrid contribution -0.282 1.323 -1.244 1.838 sum 6.302 -27.455 -5.310 28.665 Atomic orbital electron populations 1.70103 1.07827 1.27864 1.51859 1.25951 0.95751 1.03333 0.94786 0.85292 0.79062 0.78383 0.77619 1.18463 1.20533 1.20462 1.21485 0.93769 0.90786 1.49905 0.91457 1.19386 0.90066 0.88912 0.93432 1.62045 1.27128 1.02952 1.34348 1.22455 0.95817 0.89921 1.00301 1.22881 0.91301 1.01946 0.87100 1.48090 1.46216 1.08143 1.30256 1.17035 0.80818 0.82032 0.81248 1.90746 1.36945 1.85478 1.31602 1.21343 1.08701 0.97065 0.98605 1.23644 0.94249 0.87388 0.99377 1.50102 1.31165 1.11517 1.17481 1.22678 1.00738 0.74237 1.09195 1.23612 0.99205 0.99290 0.97941 1.23737 0.99444 1.01972 0.93177 1.81988 1.20056 0.99383 1.04463 1.74108 1.08494 1.09141 1.17842 1.21864 0.94663 0.80810 1.02304 1.22378 0.95365 0.99653 0.89871 0.92700 1.02421 0.97437 0.96857 0.89899 0.83562 0.90497 0.74928 0.81625 0.88894 0.84358 0.86956 0.83489 0.89776 0.88403 0.97036 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.52 -29.90 8.41 25.60 0.22 -29.69 16 8 H 0.07 3.75 7.13 -2.91 -0.02 3.73 16 9 C 0.21 11.46 4.72 85.56 0.40 11.87 16 10 N -0.54 -24.47 4.62 -898.88 -4.15 -28.62 16 11 C 0.04 1.72 5.62 86.38 0.49 2.21 16 12 C 0.09 2.99 6.44 86.35 0.56 3.55 16 13 N -0.60 -19.96 3.00 -820.81 -2.46 -22.42 16 14 C 0.60 19.14 7.70 86.69 0.67 19.80 16 15 O -0.57 -19.59 16.34 -4.01 -0.07 -19.66 16 16 C -0.12 -3.15 6.77 40.82 0.28 -2.87 16 17 C 0.11 2.05 10.64 83.85 0.89 2.94 16 18 N -0.32 -5.44 3.96 -326.41 -1.29 -6.73 16 19 C 0.03 0.25 7.16 45.02 0.32 0.57 16 20 C -0.16 -0.68 10.45 30.60 0.32 -0.36 16 21 C -0.15 -0.25 10.00 30.62 0.31 0.05 16 22 N -0.08 -1.99 13.78 37.02 0.51 -1.48 16 23 N -0.22 -6.28 8.66 -49.99 -0.43 -6.72 16 24 C 0.13 4.30 6.62 86.50 0.57 4.87 16 25 C 0.06 2.31 5.47 86.54 0.47 2.79 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 28 H 0.01 0.44 7.97 -2.39 -0.02 0.43 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 3.15 7.99 -2.39 -0.02 3.14 16 31 H 0.15 4.58 3.75 -87.71 -0.33 4.25 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.23 2.61 7.31 -2.91 -0.02 2.59 16 34 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.11 0.19 7.08 -2.39 -0.02 0.17 16 38 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 40 H 0.10 3.18 7.08 -2.39 -0.02 3.16 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 3.68 6.67 -2.38 -0.02 3.67 16 Total: -1.00 -75.06 346.52 1.08 -73.98 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.72 Total: 5.65 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.95 Total: 16.18 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -7.55 Total: -122.95 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.07 Total: -19.66 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.06 1.08 -73.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602197923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.064 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds